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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 624 |
| AccII | CGCG | 2 cut(s) | 29, 239 |
| AccIII | TCCGGA | 1 cut(s) | 589 |
| AciI | CCGC | 2 cut(s) | 159, 361 |
| AclWI | GGATC | 4 cut(s) | 97, 109, 110, 116 |
| AcyI | GRCGYC | 1 cut(s) | 625 |
| AfaI | GTAC | 2 cut(s) | 112, 254 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 64, 262, 331 |
| AflII | CTTAAG | 1 cut(s) | 89 |
| AgsI | TTSAA | 2 cut(s) | 167, 376 |
| AjnI | CCWGG | 1 cut(s) | 627 |
| AluBI | AGCT | 6 cut(s) | 24, 155, 179, 200, 502, 524 |
| AluI | AGCT | 6 cut(s) | 24, 155, 179, 200, 502, 524 |
| Alw26I | GTCTC | 2 cut(s) | 32, 436 |
| AlwI | GGATC | 4 cut(s) | 97, 109, 110, 116 |
| Ama87I | CYCGRG | 1 cut(s) | 293 |
| Aor13HI | TCCGGA | 1 cut(s) | 589 |
| ApeKI | GCWGC | 2 cut(s) | 155, 298 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 413 |
| AspLEI | GCGC | 4 cut(s) | 31, 228, 241, 627 |
| AspS9I | GGNCC | 1 cut(s) | 67 |
| AvaI | CYCGRG | 1 cut(s) | 293 |
| AvaII | GGWCC | 1 cut(s) | 67 |
| BamHI | GGATCC | 1 cut(s) | 102 |
| BanI | GGYRCC | 1 cut(s) | 624 |
| BbsI | GAAGAC | 2 cut(s) | 273, 416 |
| BbvI | GCAGC | 2 cut(s) | 142, 310 |
| BccI | CCATC | 3 cut(s) | 92, 215, 342 |
| BciT130I | CCWGG | 1 cut(s) | 629 |
| BciVI | GTATCC | 1 cut(s) | 47 |
| BcoDI | GTCTC | 2 cut(s) | 32, 436 |
| BfaI | CTAG | 2 cut(s) | 35, 477 |
| BfoI | RGCGCY | 1 cut(s) | 628 |
| BfrI | CTTAAG | 1 cut(s) | 89 |
| BfuI | GTATCC | 1 cut(s) | 47 |
| BisI | GCNGC | 3 cut(s) | 156, 159, 299 |
| BlsI | GCNGC | 3 cut(s) | 157, 160, 300 |
| Bme1390I | CCNGG | 1 cut(s) | 629 |
| Bme18I | GGWCC | 1 cut(s) | 67 |
| BmeT110I | CYCGRG | 1 cut(s) | 293 |
| BmgT120I | GGNCC | 1 cut(s) | 67 |
| BmiI | GGNNCC | 4 cut(s) | 68, 104, 511, 626 |
| BmrFI | CCNGG | 1 cut(s) | 629 |
| BmsI | GCATC | 2 cut(s) | 94, 492 |
| BpiI | GAAGAC | 2 cut(s) | 273, 416 |
| BsaAI | YACGTR | 1 cut(s) | 49 |
| BsaBI | GATNNNNATC | 1 cut(s) | 401 |
| BsaHI | GRCGYC | 1 cut(s) | 625 |
| BsaWI | WCCGGW | 1 cut(s) | 589 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 64, 262, 331 |
| Bse8I | GATNNNNATC | 1 cut(s) | 401 |
| BseAI | TCCGGA | 1 cut(s) | 589 |
| BseBI | CCWGG | 1 cut(s) | 629 |
| BseJI | GATNNNNATC | 1 cut(s) | 401 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 64, 262, 331 |
| BseRI | GAGGAG | 1 cut(s) | 135 |
| BseXI | GCAGC | 2 cut(s) | 142, 310 |
| Bsh1236I | CGCG | 2 cut(s) | 29, 239 |
| BshNI | GGYRCC | 1 cut(s) | 624 |
| BsiHKCI | CYCGRG | 1 cut(s) | 293 |
| BsiSI | CCGG | 1 cut(s) | 590 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 64, 262, 331 |
| BsmAI | GTCTC | 2 cut(s) | 32, 436 |
| BsmBI | CGTCTC | 1 cut(s) | 436 |
| BsoBI | CYCGRG | 1 cut(s) | 293 |
| Bsp13I | TCCGGA | 1 cut(s) | 589 |
| Bsp143I | GATC | 4 cut(s) | 102, 114, 121, 402 |
| BspACI | CCGC | 2 cut(s) | 159, 361 |
| BspEI | TCCGGA | 1 cut(s) | 589 |
| BspFNI | CGCG | 2 cut(s) | 29, 239 |
| BspHI | TCATGA | 1 cut(s) | 496 |
| BspLI | GGNNCC | 4 cut(s) | 68, 104, 511, 626 |
| BspPI | GGATC | 4 cut(s) | 97, 109, 110, 116 |
| BspT107I | GGYRCC | 1 cut(s) | 624 |
| BspTI | CTTAAG | 1 cut(s) | 89 |
| BssMI | GATC | 4 cut(s) | 102, 114, 121, 402 |
| BssNI | GRCGYC | 1 cut(s) | 625 |
| Bst2UI | CCWGG | 1 cut(s) | 629 |
| Bst4CI | ACNGT | 1 cut(s) | 282 |
| BstACI | GRCGYC | 1 cut(s) | 625 |
| BstAFI | CTTAAG | 1 cut(s) | 89 |
| BstBAI | YACGTR | 1 cut(s) | 49 |
| BstC8I | GCNNGC | 1 cut(s) | 83 |
| BstDEI | CTNAG | 1 cut(s) | 107 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 260 |
| BstFNI | CGCG | 2 cut(s) | 29, 239 |
| BstH2I | RGCGCY | 1 cut(s) | 628 |
| BstHHI | GCGC | 4 cut(s) | 31, 228, 241, 627 |
| BstKTI | GATC | 4 cut(s) | 105, 117, 124, 405 |
| BstMAI | GTCTC | 2 cut(s) | 32, 436 |
| BstMBI | GATC | 4 cut(s) | 102, 114, 121, 402 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 167, 176 |
| BstNI | CCWGG | 1 cut(s) | 629 |
| BstSCI | CCNGG | 1 cut(s) | 627 |
| BstSNI | TACGTA | 1 cut(s) | 49 |
| BstUI | CGCG | 2 cut(s) | 29, 239 |
| BstV1I | GCAGC | 2 cut(s) | 142, 310 |
| BstV2I | GAAGAC | 2 cut(s) | 273, 416 |
| BstX2I | RGATCY | 2 cut(s) | 102, 121 |
| BstYI | RGATCY | 2 cut(s) | 102, 121 |
| BsuI | GTATCC | 1 cut(s) | 47 |
| BtsIMutI | CAGTG | 1 cut(s) | 387 |
| Cac8I | GCNNGC | 1 cut(s) | 83 |
| CciI | TCATGA | 1 cut(s) | 496 |
| CfoI | GCGC | 4 cut(s) | 31, 228, 241, 627 |
| Cfr13I | GGNCC | 1 cut(s) | 67 |
| CseI | GACGC | 2 cut(s) | 245, 489 |
| Csp6I | GTAC | 2 cut(s) | 111, 253 |
| CviAII | CATG | 3 cut(s) | 229, 497, 514 |
| CviQI | GTAC | 2 cut(s) | 111, 253 |
| DdeI | CTNAG | 1 cut(s) | 107 |
| DinI | GGCGCC | 1 cut(s) | 626 |
| DpnI | GATC | 4 cut(s) | 104, 116, 123, 404 |
| DpnII | GATC | 4 cut(s) | 102, 114, 121, 402 |
| Eco105I | TACGTA | 1 cut(s) | 49 |
| Eco47I | GGWCC | 1 cut(s) | 67 |
| Eco88I | CYCGRG | 1 cut(s) | 293 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 260 |
| EcoRII | CCWGG | 1 cut(s) | 627 |
| EgeI | GGCGCC | 1 cut(s) | 626 |
| EheI | GGCGCC | 1 cut(s) | 626 |
| Esp3I | CGTCTC | 1 cut(s) | 436 |
| FaeI | CATG | 3 cut(s) | 232, 500, 517 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 8, 40 |
| FatI | CATG | 3 cut(s) | 228, 496, 513 |
| Fnu4HI | GCNGC | 3 cut(s) | 156, 159, 299 |
| Fsp4HI | GCNGC | 3 cut(s) | 156, 159, 299 |
| FspBI | CTAG | 2 cut(s) | 35, 477 |
| GlaI | GCGC | 4 cut(s) | 30, 227, 240, 626 |
| GluI | GCNGC | 3 cut(s) | 156, 159, 299 |
| HaeII | RGCGCY | 1 cut(s) | 628 |
| HapII | CCGG | 1 cut(s) | 590 |
| HgaI | GACGC | 2 cut(s) | 245, 489 |
| HhaI | GCGC | 4 cut(s) | 31, 228, 241, 627 |
| Hin1I | GRCGYC | 1 cut(s) | 625 |
| Hin1II | CATG | 3 cut(s) | 232, 500, 517 |
| Hin6I | GCGC | 4 cut(s) | 29, 226, 239, 625 |
| HinP1I | GCGC | 4 cut(s) | 29, 226, 239, 625 |
| HinfI | GANTC | 2 cut(s) | 320, 593 |
| HpaII | CCGG | 1 cut(s) | 590 |
| Hpy188I | TCNGA | 2 cut(s) | 132, 462 |
| Hpy188III | TCNNGA | 5 cut(s) | 317, 332, 406, 497, 590 |
| HpyAV | CCTTC | 2 cut(s) | 433, 615 |
| HpyCH4III | ACNGT | 1 cut(s) | 282 |
| HpyCH4IV | ACGT | 3 cut(s) | 48, 135, 519 |
| HpyCH4V | TGCA | 1 cut(s) | 437 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 167, 176 |
| HpyF3I | CTNAG | 1 cut(s) | 107 |
| HpySE526I | ACGT | 3 cut(s) | 48, 135, 519 |
| Hsp92I | GRCGYC | 1 cut(s) | 625 |
| Hsp92II | CATG | 3 cut(s) | 232, 500, 517 |
| HspAI | GCGC | 4 cut(s) | 29, 226, 239, 625 |
| KasI | GGCGCC | 1 cut(s) | 624 |
| Kpn2I | TCCGGA | 1 cut(s) | 589 |
| Kzo9I | GATC | 4 cut(s) | 102, 114, 121, 402 |
| LmnI | GCTCC | 3 cut(s) | 246, 509, 614 |
| LpnPI | CCDG | 7 cut(s) | 23, 95, 317, 338, 582, 603, 614 |
| Lsp1109I | GCAGC | 2 cut(s) | 142, 310 |
| LweI | GCATC | 2 cut(s) | 94, 492 |
| MaeI | CTAG | 2 cut(s) | 35, 477 |
| MaeII | ACGT | 3 cut(s) | 48, 135, 519 |
| MaeIII | GTNAC | 2 cut(s) | 5, 317 |
| MalI | GATC | 4 cut(s) | 104, 116, 123, 404 |
| MboI | GATC | 4 cut(s) | 102, 114, 121, 402 |
| MboII | GAAGA | 4 cut(s) | 278, 421, 562, 587 |
| MflI | RGATCY | 2 cut(s) | 102, 121 |
| MluCI | AATT | 3 cut(s) | 454, 585, 598 |
| Mly113I | GGCGCC | 1 cut(s) | 625 |
| MlyI | GAGTC | 1 cut(s) | 314 |
| MnlI | CCTC | 5 cut(s) | 156, 181, 256, 266, 368 |
| MroI | TCCGGA | 1 cut(s) | 589 |
| MroXI | GAANNNNTTC | 1 cut(s) | 413 |
| MseI | TTAA | 1 cut(s) | 90 |
| MslI | CAYNNNNRTG | 2 cut(s) | 392, 545 |
| MspCI | CTTAAG | 1 cut(s) | 89 |
| MspI | CCGG | 1 cut(s) | 590 |
| MspR9I | CCNGG | 1 cut(s) | 629 |
| MvaI | CCWGG | 1 cut(s) | 629 |
| MvnI | CGCG | 2 cut(s) | 29, 239 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 167, 176 |
| NarI | GGCGCC | 1 cut(s) | 625 |
| NdeII | GATC | 4 cut(s) | 102, 114, 121, 402 |
| NlaIII | CATG | 3 cut(s) | 232, 500, 517 |
| NlaIV | GGNNCC | 4 cut(s) | 68, 104, 511, 626 |
| NmuCI | GTSAC | 1 cut(s) | 317 |
| PaeR7I | CTCGAG | 1 cut(s) | 293 |
| PagI | TCATGA | 1 cut(s) | 496 |
| PdmI | GAANNNNTTC | 1 cut(s) | 413 |
| PfeI | GAWTC | 1 cut(s) | 593 |
| PkrI | GCNGC | 3 cut(s) | 157, 160, 300 |
| PleI | GAGTC | 1 cut(s) | 314 |
| PluTI | GGCGCC | 1 cut(s) | 628 |
| PpsI | GAGTC | 1 cut(s) | 314 |
| Ppu21I | YACGTR | 1 cut(s) | 49 |
| Psp6I | CCWGG | 1 cut(s) | 627 |
| PspGI | CCWGG | 1 cut(s) | 627 |
| PspN4I | GGNNCC | 4 cut(s) | 68, 104, 511, 626 |
| PspPI | GGNCC | 1 cut(s) | 67 |
| PspXI | VCTCGAGB | 1 cut(s) | 293 |
| PsuI | RGATCY | 2 cut(s) | 102, 121 |
| RsaI | GTAC | 2 cut(s) | 112, 254 |
| RsaNI | GTAC | 2 cut(s) | 111, 253 |
| RseI | CAYNNNNRTG | 2 cut(s) | 392, 545 |
| SaqAI | TTAA | 1 cut(s) | 90 |
| SatI | GCNGC | 3 cut(s) | 156, 159, 299 |
| Sau3AI | GATC | 4 cut(s) | 102, 114, 121, 402 |
| Sau96I | GGNCC | 1 cut(s) | 67 |
| SchI | GAGTC | 1 cut(s) | 314 |
| ScrFI | CCNGG | 1 cut(s) | 629 |
| SfaNI | GCATC | 2 cut(s) | 94, 492 |
| SfoI | GGCGCC | 1 cut(s) | 626 |
| Sfr274I | CTCGAG | 1 cut(s) | 293 |
| SinI | GGWCC | 1 cut(s) | 67 |
| SlaI | CTCGAG | 1 cut(s) | 293 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 392, 545 |
| SmlI | CTYRAG | 2 cut(s) | 89, 293 |
| SmoI | CTYRAG | 2 cut(s) | 89, 293 |
| SnaBI | TACGTA | 1 cut(s) | 49 |
| Sse9I | AATT | 3 cut(s) | 454, 585, 598 |
| SsiI | CCGC | 2 cut(s) | 159, 361 |
| SspDI | GGCGCC | 1 cut(s) | 624 |
| SspMI | CTAG | 2 cut(s) | 35, 477 |
| StyD4I | CCNGG | 1 cut(s) | 627 |
| TaaI | ACNGT | 1 cut(s) | 282 |
| TaiI | ACGT | 3 cut(s) | 51, 138, 522 |
| TaqI | TCGA | 2 cut(s) | 294, 405 |
| TasI | AATT | 3 cut(s) | 454, 585, 598 |
| TauI | GCSGC | 1 cut(s) | 161 |
| TfiI | GAWTC | 1 cut(s) | 593 |
| Tru1I | TTAA | 1 cut(s) | 90 |
| Tru9I | TTAA | 1 cut(s) | 90 |
| TscAI | CASTG | 1 cut(s) | 394 |
| TseFI | GTSAC | 1 cut(s) | 317 |
| TseI | GCWGC | 2 cut(s) | 155, 298 |
| Tsp45I | GTSAC | 1 cut(s) | 317 |
| TspDTI | ATGAA | 4 cut(s) | 210, 245, 485, 530 |
| TspGWI | ACGGA | 1 cut(s) | 59 |
| TspRI | CASTG | 1 cut(s) | 394 |
| Vha464I | CTTAAG | 1 cut(s) | 89 |
| VpaK11BI | GGWCC | 1 cut(s) | 67 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 260 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 279 |
| XhoI | CTCGAG | 1 cut(s) | 293 |
| XmnI | GAANNNNTTC | 1 cut(s) | 413 |
| XspI | CTAG | 2 cut(s) | 35, 477 |