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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 606 |
| AccB1I | GGYRCC | 1 cut(s) | 719 |
| AciI | CCGC | 3 cut(s) | 238, 640, 861 |
| AclWI | GGATC | 2 cut(s) | 428, 730 |
| AcoI | YGGCCR | 1 cut(s) | 706 |
| AcsI | RAATTY | 1 cut(s) | 305 |
| AcyI | GRCGYC | 1 cut(s) | 720 |
| AdeI | CACNNNGTG | 1 cut(s) | 901 |
| AfaI | GTAC | 1 cut(s) | 5 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 555, 556, 557 |
| AgsI | TTSAA | 2 cut(s) | 253, 757 |
| AjiI | CACGTC | 2 cut(s) | 18, 88 |
| AjnI | CCWGG | 1 cut(s) | 81 |
| AluBI | AGCT | 5 cut(s) | 107, 439, 520, 842, 893 |
| AluI | AGCT | 5 cut(s) | 107, 439, 520, 842, 893 |
| Alw21I | GWGCWC | 1 cut(s) | 441 |
| Alw26I | GTCTC | 1 cut(s) | 768 |
| AlwI | GGATC | 2 cut(s) | 428, 730 |
| AoxI | GGCC | 2 cut(s) | 562, 706 |
| ApoI | RAATTY | 1 cut(s) | 305 |
| AspLEI | GCGC | 2 cut(s) | 548, 722 |
| AspS9I | GGNCC | 2 cut(s) | 562, 608 |
| AsuHPI | GGTGA | 1 cut(s) | 850 |
| AsuNHI | GCTAGC | 1 cut(s) | 77 |
| AvaII | GGWCC | 1 cut(s) | 608 |
| BalI | TGGCCA | 1 cut(s) | 708 |
| BanI | GGYRCC | 1 cut(s) | 719 |
| BanII | GRGCYC | 1 cut(s) | 441 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 577, 609 |
| BbsI | GAAGAC | 1 cut(s) | 353 |
| Bbv12I | GWGCWC | 1 cut(s) | 441 |
| BccI | CCATC | 5 cut(s) | 167, 219, 373, 411, 747 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 392, 426 |
| BciT130I | CCWGG | 1 cut(s) | 83 |
| BciVI | GTATCC | 1 cut(s) | 583 |
| BcoDI | GTCTC | 1 cut(s) | 768 |
| BfaI | CTAG | 2 cut(s) | 78, 215 |
| BfmI | CTRYAG | 1 cut(s) | 507 |
| BfoI | RGCGCY | 1 cut(s) | 723 |
| BfuI | GTATCC | 1 cut(s) | 583 |
| BglII | AGATCT | 1 cut(s) | 503 |
| Bme1390I | CCNGG | 1 cut(s) | 83 |
| Bme18I | GGWCC | 1 cut(s) | 608 |
| BmgBI | CACGTC | 2 cut(s) | 18, 88 |
| BmgT120I | GGNCC | 2 cut(s) | 562, 608 |
| BmiI | GGNNCC | 3 cut(s) | 563, 662, 721 |
| BmrFI | CCNGG | 1 cut(s) | 83 |
| BmtI | GCTAGC | 1 cut(s) | 81 |
| BpiI | GAAGAC | 1 cut(s) | 353 |
| BpuEI | CTTGAG | 1 cut(s) | 93 |
| Bsa29I | ATCGAT | 1 cut(s) | 402 |
| BsaHI | GRCGYC | 1 cut(s) | 720 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 555, 556, 557 |
| Bse1I | ACTGG | 2 cut(s) | 30, 60 |
| BseBI | CCWGG | 1 cut(s) | 83 |
| BseCI | ATCGAT | 1 cut(s) | 402 |
| BseGI | GGATG | 2 cut(s) | 162, 477 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 555, 556, 557 |
| BseMII | CTCAG | 1 cut(s) | 771 |
| BseNI | ACTGG | 2 cut(s) | 30, 60 |
| BshFI | GGCC | 2 cut(s) | 564, 708 |
| BshNI | GGYRCC | 1 cut(s) | 719 |
| BshVI | ATCGAT | 1 cut(s) | 402 |
| BsiHKAI | GWGCWC | 1 cut(s) | 441 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 555, 556, 557 |
| BsmAI | GTCTC | 1 cut(s) | 768 |
| BsnI | GGCC | 2 cut(s) | 564, 708 |
| Bsp1286I | GDGCHC | 1 cut(s) | 441 |
| Bsp143I | GATC | 7 cut(s) | 37, 321, 420, 503, 735, 817, 913 |
| BspACI | CCGC | 3 cut(s) | 238, 640, 861 |
| BspANI | GGCC | 2 cut(s) | 564, 708 |
| BspCNI | CTCAG | 1 cut(s) | 772 |
| BspDI | ATCGAT | 1 cut(s) | 402 |
| BspHI | TCATGA | 1 cut(s) | 433 |
| BspLI | GGNNCC | 3 cut(s) | 563, 662, 721 |
| BspOI | GCTAGC | 1 cut(s) | 81 |
| BspPI | GGATC | 2 cut(s) | 428, 730 |
| BspT107I | GGYRCC | 1 cut(s) | 719 |
| BsrI | ACTGG | 2 cut(s) | 30, 60 |
| BssMI | GATC | 7 cut(s) | 37, 321, 420, 503, 735, 817, 913 |
| BssNI | GRCGYC | 1 cut(s) | 720 |
| Bst2UI | CCWGG | 1 cut(s) | 83 |
| Bst4CI | ACNGT | 2 cut(s) | 55, 97 |
| Bst6I | CTCTTC | 1 cut(s) | 661 |
| BstACI | GRCGYC | 1 cut(s) | 720 |
| BstC8I | GCNNGC | 2 cut(s) | 79, 105 |
| BstDEI | CTNAG | 4 cut(s) | 136, 552, 732, 780 |
| BstEII | GGTNACC | 1 cut(s) | 635 |
| BstF5I | GGATG | 2 cut(s) | 162, 477 |
| BstH2I | RGCGCY | 1 cut(s) | 723 |
| BstHHI | GCGC | 2 cut(s) | 548, 722 |
| BstKTI | GATC | 7 cut(s) | 40, 324, 423, 506, 738, 820, 916 |
| BstMAI | GTCTC | 1 cut(s) | 768 |
| BstMBI | GATC | 7 cut(s) | 37, 321, 420, 503, 735, 817, 913 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 20, 890 |
| BstNI | CCWGG | 1 cut(s) | 83 |
| BstPI | GGTNACC | 1 cut(s) | 635 |
| BstSCI | CCNGG | 1 cut(s) | 81 |
| BstSFI | CTRYAG | 1 cut(s) | 507 |
| BstV2I | GAAGAC | 1 cut(s) | 353 |
| BstX2I | RGATCY | 2 cut(s) | 503, 735 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 716 |
| BstYI | RGATCY | 2 cut(s) | 503, 735 |
| Bsu15I | ATCGAT | 1 cut(s) | 402 |
| BsuI | GTATCC | 1 cut(s) | 583 |
| BsuRI | GGCC | 2 cut(s) | 564, 708 |
| BsuTUI | ATCGAT | 1 cut(s) | 402 |
| BtgZI | GCGATG | 1 cut(s) | 347 |
| BtrI | CACGTC | 2 cut(s) | 18, 88 |
| BtsCI | GGATG | 2 cut(s) | 162, 477 |
| BtsIMutI | CAGTG | 1 cut(s) | 23 |
| Cac8I | GCNNGC | 2 cut(s) | 79, 105 |
| CciI | TCATGA | 1 cut(s) | 433 |
| CfoI | GCGC | 2 cut(s) | 548, 722 |
| Cfr13I | GGNCC | 2 cut(s) | 562, 608 |
| ClaI | ATCGAT | 1 cut(s) | 402 |
| Csp6I | GTAC | 1 cut(s) | 4 |
| CviAII | CATG | 3 cut(s) | 434, 470, 710 |
| CviQI | GTAC | 1 cut(s) | 4 |
| DdeI | CTNAG | 4 cut(s) | 136, 552, 732, 780 |
| DinI | GGCGCC | 1 cut(s) | 721 |
| DpnI | GATC | 7 cut(s) | 39, 323, 422, 505, 737, 819, 915 |
| DpnII | GATC | 7 cut(s) | 37, 321, 420, 503, 735, 817, 913 |
| DraIII | CACNNNGTG | 1 cut(s) | 901 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 606 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 606 |
| EaeI | YGGCCR | 1 cut(s) | 706 |
| Eam1104I | CTCTTC | 1 cut(s) | 661 |
| EarI | CTCTTC | 1 cut(s) | 661 |
| Ecl136II | GAGCTC | 1 cut(s) | 439 |
| Eco24I | GRGCYC | 1 cut(s) | 441 |
| Eco47I | GGWCC | 1 cut(s) | 608 |
| Eco53kI | GAGCTC | 1 cut(s) | 439 |
| Eco91I | GGTNACC | 1 cut(s) | 635 |
| EcoICRI | GAGCTC | 1 cut(s) | 439 |
| EcoO65I | GGTNACC | 1 cut(s) | 635 |
| EcoRI | GAATTC | 1 cut(s) | 305 |
| EcoRII | CCWGG | 1 cut(s) | 81 |
| EcoT38I | GRGCYC | 1 cut(s) | 441 |
| EgeI | GGCGCC | 1 cut(s) | 721 |
| EheI | GGCGCC | 1 cut(s) | 721 |
| FaeI | CATG | 3 cut(s) | 437, 473, 713 |
| FatI | CATG | 3 cut(s) | 433, 469, 709 |
| FokI | GGATG | 2 cut(s) | 149, 464 |
| FriOI | GRGCYC | 1 cut(s) | 441 |
| FspBI | CTAG | 2 cut(s) | 78, 215 |
| GlaI | GCGC | 2 cut(s) | 547, 721 |
| HaeII | RGCGCY | 1 cut(s) | 723 |
| HaeIII | GGCC | 2 cut(s) | 564, 708 |
| HhaI | GCGC | 2 cut(s) | 548, 722 |
| Hin1I | GRCGYC | 1 cut(s) | 720 |
| Hin1II | CATG | 3 cut(s) | 437, 473, 713 |
| Hin6I | GCGC | 2 cut(s) | 546, 720 |
| HinP1I | GCGC | 2 cut(s) | 546, 720 |
| HincII | GTYRAC | 3 cut(s) | 31, 65, 674 |
| HindII | GTYRAC | 3 cut(s) | 31, 65, 674 |
| HinfI | GANTC | 5 cut(s) | 172, 197, 349, 399, 530 |
| HphI | GGTGA | 1 cut(s) | 850 |
| Hpy166II | GTNNAC | 3 cut(s) | 31, 65, 674 |
| Hpy188I | TCNGA | 4 cut(s) | 37, 277, 781, 817 |
| Hpy188III | TCNNGA | 8 cut(s) | 209, 263, 434, 501, 527, 597, 801, 917 |
| Hpy8I | GTNNAC | 3 cut(s) | 31, 65, 674 |
| HpyAV | CCTTC | 2 cut(s) | 370, 626 |
| HpyCH4III | ACNGT | 2 cut(s) | 55, 97 |
| HpyCH4IV | ACGT | 5 cut(s) | 17, 87, 189, 676, 750 |
| HpyCH4V | TGCA | 3 cut(s) | 288, 374, 413 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 20, 890 |
| HpyF3I | CTNAG | 4 cut(s) | 136, 552, 732, 780 |
| HpySE526I | ACGT | 5 cut(s) | 17, 87, 189, 676, 750 |
| Hsp92I | GRCGYC | 1 cut(s) | 720 |
| Hsp92II | CATG | 3 cut(s) | 437, 473, 713 |
| HspAI | GCGC | 2 cut(s) | 546, 720 |
| KasI | GGCGCC | 1 cut(s) | 719 |
| Kzo9I | GATC | 7 cut(s) | 37, 321, 420, 503, 735, 817, 913 |
| MaeI | CTAG | 2 cut(s) | 78, 215 |
| MaeII | ACGT | 5 cut(s) | 17, 87, 189, 676, 750 |
| MaeIII | GTNAC | 4 cut(s) | 194, 406, 635, 856 |
| MalI | GATC | 7 cut(s) | 39, 323, 422, 505, 737, 819, 915 |
| MboI | GATC | 7 cut(s) | 37, 321, 420, 503, 735, 817, 913 |
| MboII | GAAGA | 5 cut(s) | 358, 678, 860, 923, 932 |
| MflI | RGATCY | 2 cut(s) | 503, 735 |
| MhlI | GDGCHC | 1 cut(s) | 441 |
| MlsI | TGGCCA | 1 cut(s) | 708 |
| MluCI | AATT | 4 cut(s) | 305, 496, 535, 852 |
| MluNI | TGGCCA | 1 cut(s) | 708 |
| Mly113I | GGCGCC | 1 cut(s) | 720 |
| MlyI | GAGTC | 3 cut(s) | 166, 191, 343 |
| MnlI | CCTC | 7 cut(s) | 133, 245, 549, 662, 682, 686, 712 |
| Mox20I | TGGCCA | 1 cut(s) | 708 |
| MscI | TGGCCA | 1 cut(s) | 708 |
| MseI | TTAA | 1 cut(s) | 291 |
| MslI | CAYNNNNRTG | 3 cut(s) | 167, 714, 744 |
| Msp20I | TGGCCA | 1 cut(s) | 708 |
| MspR9I | CCNGG | 1 cut(s) | 83 |
| MvaI | CCWGG | 1 cut(s) | 83 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 20, 890 |
| NarI | GGCGCC | 1 cut(s) | 720 |
| NdeII | GATC | 7 cut(s) | 37, 321, 420, 503, 735, 817, 913 |
| NheI | GCTAGC | 1 cut(s) | 77 |
| NlaIII | CATG | 3 cut(s) | 437, 473, 713 |
| NlaIV | GGNNCC | 3 cut(s) | 563, 662, 721 |
| NmuCI | GTSAC | 2 cut(s) | 194, 856 |
| PagI | TCATGA | 1 cut(s) | 433 |
| PfeI | GAWTC | 2 cut(s) | 399, 530 |
| PleI | GAGTC | 3 cut(s) | 166, 191, 343 |
| PluTI | GGCGCC | 1 cut(s) | 723 |
| PpsI | GAGTC | 3 cut(s) | 166, 191, 343 |
| Psp124BI | GAGCTC | 1 cut(s) | 441 |
| Psp6I | CCWGG | 1 cut(s) | 81 |
| PspEI | GGTNACC | 1 cut(s) | 635 |
| PspGI | CCWGG | 1 cut(s) | 81 |
| PspN4I | GGNNCC | 3 cut(s) | 563, 662, 721 |
| PspPI | GGNCC | 2 cut(s) | 562, 608 |
| PsuI | RGATCY | 2 cut(s) | 503, 735 |
| RsaI | GTAC | 1 cut(s) | 5 |
| RsaNI | GTAC | 1 cut(s) | 4 |
| RseI | CAYNNNNRTG | 3 cut(s) | 167, 714, 744 |
| SacI | GAGCTC | 1 cut(s) | 441 |
| SaqAI | TTAA | 1 cut(s) | 291 |
| Sau3AI | GATC | 7 cut(s) | 37, 321, 420, 503, 735, 817, 913 |
| Sau96I | GGNCC | 2 cut(s) | 562, 608 |
| SchI | GAGTC | 3 cut(s) | 166, 191, 343 |
| ScrFI | CCNGG | 1 cut(s) | 83 |
| SduI | GDGCHC | 1 cut(s) | 441 |
| SfcI | CTRYAG | 1 cut(s) | 507 |
| SfoI | GGCGCC | 1 cut(s) | 721 |
| SinI | GGWCC | 1 cut(s) | 608 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 167, 714, 744 |
| SmlI | CTYRAG | 1 cut(s) | 108 |
| SmoI | CTYRAG | 1 cut(s) | 108 |
| Sse9I | AATT | 4 cut(s) | 305, 496, 535, 852 |
| SsiI | CCGC | 3 cut(s) | 238, 640, 861 |
| SspDI | GGCGCC | 1 cut(s) | 719 |
| SspMI | CTAG | 2 cut(s) | 78, 215 |
| SstI | GAGCTC | 1 cut(s) | 441 |
| StyD4I | CCNGG | 1 cut(s) | 81 |
| TaaI | ACNGT | 2 cut(s) | 55, 97 |
| TaiI | ACGT | 5 cut(s) | 20, 90, 192, 679, 753 |
| TaqI | TCGA | 4 cut(s) | 397, 402, 500, 802 |
| TasI | AATT | 4 cut(s) | 305, 496, 535, 852 |
| TfiI | GAWTC | 2 cut(s) | 399, 530 |
| Tru1I | TTAA | 1 cut(s) | 291 |
| Tru9I | TTAA | 1 cut(s) | 291 |
| TscAI | CASTG | 1 cut(s) | 30 |
| TseFI | GTSAC | 2 cut(s) | 194, 856 |
| Tsp45I | GTSAC | 2 cut(s) | 194, 856 |
| TspDTI | ATGAA | 3 cut(s) | 422, 467, 788 |
| TspGWI | ACGGA | 2 cut(s) | 182, 673 |
| TspRI | CASTG | 1 cut(s) | 30 |
| VpaK11BI | GGWCC | 1 cut(s) | 608 |
| XapI | RAATTY | 1 cut(s) | 305 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 22 |
| XspI | CTAG | 2 cut(s) | 78, 215 |