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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 720 |
| AciI | CCGC | 2 cut(s) | 436, 718 |
| AcoI | YGGCCR | 2 cut(s) | 80, 304 |
| AcsI | RAATTY | 1 cut(s) | 784 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 313 |
| AgeI | ACCGGT | 1 cut(s) | 59 |
| AgsI | TTSAA | 1 cut(s) | 732 |
| AhlI | ACTAGT | 1 cut(s) | 578 |
| AjiI | CACGTC | 3 cut(s) | 218, 235, 493 |
| AjnI | CCWGG | 1 cut(s) | 486 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 645, 677 |
| AluBI | AGCT | 2 cut(s) | 512, 518 |
| AluI | AGCT | 2 cut(s) | 512, 518 |
| Alw26I | GTCTC | 1 cut(s) | 649 |
| Ama87I | CYCGRG | 1 cut(s) | 476 |
| AoxI | GGCC | 4 cut(s) | 80, 191, 205, 304 |
| ApeKI | GCWGC | 1 cut(s) | 536 |
| ApoI | RAATTY | 1 cut(s) | 784 |
| AsiGI | ACCGGT | 1 cut(s) | 59 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 761 |
| AspS9I | GGNCC | 1 cut(s) | 206 |
| AsuC2I | CCSGG | 1 cut(s) | 267 |
| AsuHPI | GGTGA | 1 cut(s) | 328 |
| AvaI | CYCGRG | 1 cut(s) | 476 |
| BbsI | GAAGAC | 1 cut(s) | 630 |
| BbvI | GCAGC | 1 cut(s) | 548 |
| BccI | CCATC | 2 cut(s) | 449, 572 |
| BciT130I | CCWGG | 1 cut(s) | 488 |
| BcnI | CCSGG | 1 cut(s) | 267 |
| BcoDI | GTCTC | 1 cut(s) | 649 |
| BcuI | ACTAGT | 1 cut(s) | 578 |
| BfaI | CTAG | 4 cut(s) | 464, 483, 579, 695 |
| BfmI | CTRYAG | 1 cut(s) | 96 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 545 |
| BisI | GCNGC | 1 cut(s) | 537 |
| BlsI | GCNGC | 1 cut(s) | 538 |
| Bme1390I | CCNGG | 2 cut(s) | 267, 488 |
| BmeT110I | CYCGRG | 1 cut(s) | 476 |
| BmgBI | CACGTC | 3 cut(s) | 218, 235, 493 |
| BmgT120I | GGNCC | 1 cut(s) | 206 |
| BmrFI | CCNGG | 2 cut(s) | 267, 488 |
| BmsI | GCATC | 3 cut(s) | 232, 451, 798 |
| BpiI | GAAGAC | 1 cut(s) | 630 |
| BpmI | CTGGAG | 1 cut(s) | 584 |
| BpuEI | CTTGAG | 2 cut(s) | 431, 498 |
| BpuMI | CCSGG | 1 cut(s) | 267 |
| BsaI | GGTCTC | 1 cut(s) | 649 |
| BsaJI | CCNNGG | 1 cut(s) | 182 |
| BsaWI | WCCGGW | 2 cut(s) | 38, 59 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 76, 106 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 313 |
| Bse118I | RCCGGY | 3 cut(s) | 59, 78, 105 |
| Bse1I | ACTGG | 2 cut(s) | 406, 601 |
| BseBI | CCWGG | 1 cut(s) | 488 |
| BseDI | CCNNGG | 1 cut(s) | 182 |
| BseGI | GGATG | 3 cut(s) | 363, 567, 595 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 313 |
| BseNI | ACTGG | 2 cut(s) | 406, 601 |
| BseXI | GCAGC | 1 cut(s) | 548 |
| BshFI | GGCC | 4 cut(s) | 82, 193, 207, 306 |
| BshTI | ACCGGT | 1 cut(s) | 59 |
| BsiHKCI | CYCGRG | 1 cut(s) | 476 |
| BsiSI | CCGG | 7 cut(s) | 39, 60, 79, 106, 267, 303, 340 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 313 |
| BsmAI | GTCTC | 1 cut(s) | 649 |
| BsnI | GGCC | 4 cut(s) | 82, 193, 207, 306 |
| Bso31I | GGTCTC | 1 cut(s) | 649 |
| BsoBI | CYCGRG | 1 cut(s) | 476 |
| Bsp143I | GATC | 1 cut(s) | 800 |
| Bsp19I | CCATGG | 1 cut(s) | 182 |
| BspACI | CCGC | 2 cut(s) | 436, 718 |
| BspANI | GGCC | 4 cut(s) | 82, 193, 207, 306 |
| BspHI | TCATGA | 1 cut(s) | 240 |
| BspTNI | GGTCTC | 1 cut(s) | 649 |
| BsrBI | CCGCTC | 1 cut(s) | 720 |
| BsrFI | RCCGGY | 3 cut(s) | 59, 78, 105 |
| BsrI | ACTGG | 2 cut(s) | 406, 601 |
| BssAI | RCCGGY | 3 cut(s) | 59, 78, 105 |
| BssECI | CCNNGG | 1 cut(s) | 182 |
| BssMI | GATC | 1 cut(s) | 800 |
| BssT1I | CCWWGG | 1 cut(s) | 182 |
| Bst2UI | CCWGG | 1 cut(s) | 488 |
| Bst4CI | ACNGT | 2 cut(s) | 247, 254 |
| BstC8I | GCNNGC | 3 cut(s) | 205, 440, 510 |
| BstDEI | CTNAG | 1 cut(s) | 541 |
| BstDSI | CCRYGG | 1 cut(s) | 182 |
| BstF5I | GGATG | 3 cut(s) | 363, 567, 595 |
| BstKTI | GATC | 1 cut(s) | 803 |
| BstMAI | GTCTC | 1 cut(s) | 649 |
| BstMBI | GATC | 1 cut(s) | 800 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 20, 165, 220, 545, 554 |
| BstNI | CCWGG | 1 cut(s) | 488 |
| BstSCI | CCNGG | 2 cut(s) | 265, 486 |
| BstSFI | CTRYAG | 1 cut(s) | 96 |
| BstV1I | GCAGC | 1 cut(s) | 548 |
| BstV2I | GAAGAC | 1 cut(s) | 630 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 183 |
| BsuRI | GGCC | 4 cut(s) | 82, 193, 207, 306 |
| BtgI | CCRYGG | 1 cut(s) | 182 |
| BtrI | CACGTC | 3 cut(s) | 218, 235, 493 |
| BtsCI | GGATG | 3 cut(s) | 363, 567, 595 |
| BtsI | GCAGTG | 1 cut(s) | 209 |
| BtsIMutI | CAGTG | 1 cut(s) | 209 |
| Cac8I | GCNNGC | 3 cut(s) | 205, 440, 510 |
| CciI | TCATGA | 1 cut(s) | 240 |
| Cfr10I | RCCGGY | 3 cut(s) | 59, 78, 105 |
| Cfr13I | GGNCC | 1 cut(s) | 206 |
| CseI | GACGC | 1 cut(s) | 209 |
| CspAI | ACCGGT | 1 cut(s) | 59 |
| CviAII | CATG | 3 cut(s) | 183, 241, 705 |
| DdeI | CTNAG | 1 cut(s) | 541 |
| DpnI | GATC | 1 cut(s) | 802 |
| DpnII | GATC | 1 cut(s) | 800 |
| EaeI | YGGCCR | 2 cut(s) | 80, 304 |
| EciI | GGCGGA | 1 cut(s) | 425 |
| Eco130I | CCWWGG | 1 cut(s) | 182 |
| Eco31I | GGTCTC | 1 cut(s) | 649 |
| Eco32I | GATATC | 2 cut(s) | 413, 433 |
| Eco88I | CYCGRG | 1 cut(s) | 476 |
| EcoRI | GAATTC | 1 cut(s) | 784 |
| EcoRII | CCWGG | 1 cut(s) | 486 |
| EcoRV | GATATC | 2 cut(s) | 413, 433 |
| EcoT14I | CCWWGG | 1 cut(s) | 182 |
| ErhI | CCWWGG | 1 cut(s) | 182 |
| FaeI | CATG | 3 cut(s) | 186, 244, 708 |
| FaiI | YATR | 9 cut(s) | 184, 242, 470, 585, 587, 606, 706, 711, 749 |
| FatI | CATG | 3 cut(s) | 182, 240, 704 |
| FauNDI | CATATG | 1 cut(s) | 585 |
| Fnu4HI | GCNGC | 1 cut(s) | 537 |
| FokI | GGATG | 3 cut(s) | 370, 554, 602 |
| Fsp4HI | GCNGC | 1 cut(s) | 537 |
| FspBI | CTAG | 4 cut(s) | 464, 483, 579, 695 |
| GluI | GCNGC | 1 cut(s) | 537 |
| GsuI | CTGGAG | 1 cut(s) | 584 |
| HaeIII | GGCC | 4 cut(s) | 82, 193, 207, 306 |
| HapII | CCGG | 7 cut(s) | 39, 60, 79, 106, 267, 303, 340 |
| HgaI | GACGC | 1 cut(s) | 209 |
| Hin1II | CATG | 3 cut(s) | 186, 244, 708 |
| HincII | GTYRAC | 3 cut(s) | 250, 272, 283 |
| HindII | GTYRAC | 3 cut(s) | 250, 272, 283 |
| HindIII | AAGCTT | 1 cut(s) | 516 |
| HinfI | GANTC | 5 cut(s) | 29, 459, 472, 593, 677 |
| HpaII | CCGG | 7 cut(s) | 39, 60, 79, 106, 267, 303, 340 |
| HphI | GGTGA | 1 cut(s) | 328 |
| Hpy166II | GTNNAC | 4 cut(s) | 76, 250, 272, 283 |
| Hpy188I | TCNGA | 4 cut(s) | 34, 294, 328, 756 |
| Hpy188III | TCNNGA | 7 cut(s) | 241, 408, 428, 476, 689, 742, 776 |
| Hpy8I | GTNNAC | 4 cut(s) | 76, 250, 272, 283 |
| HpyAV | CCTTC | 1 cut(s) | 627 |
| HpyCH4III | ACNGT | 2 cut(s) | 247, 254 |
| HpyCH4IV | ACGT | 4 cut(s) | 217, 234, 492, 669 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 20, 165, 220, 545, 554 |
| HpyF3I | CTNAG | 1 cut(s) | 541 |
| HpySE526I | ACGT | 4 cut(s) | 217, 234, 492, 669 |
| Hsp92II | CATG | 3 cut(s) | 186, 244, 708 |
| Kzo9I | GATC | 1 cut(s) | 800 |
| LmnI | GCTCC | 1 cut(s) | 603 |
| Lsp1109I | GCAGC | 1 cut(s) | 548 |
| LweI | GCATC | 3 cut(s) | 232, 451, 798 |
| MaeI | CTAG | 4 cut(s) | 464, 483, 579, 695 |
| MaeII | ACGT | 4 cut(s) | 217, 234, 492, 669 |
| MaeIII | GTNAC | 4 cut(s) | 316, 362, 674, 700 |
| MalI | GATC | 1 cut(s) | 802 |
| MbiI | CCGCTC | 1 cut(s) | 720 |
| MboI | GATC | 1 cut(s) | 800 |
| MboII | GAAGA | 5 cut(s) | 54, 131, 536, 635, 665 |
| MfeI | CAATTG | 1 cut(s) | 389 |
| MluCI | AATT | 4 cut(s) | 374, 389, 498, 784 |
| MlyI | GAGTC | 1 cut(s) | 671 |
| MmeI | TCCRAC | 2 cut(s) | 317, 351 |
| MnlI | CCTC | 5 cut(s) | 25, 183, 348, 538, 725 |
| MroXI | GAANNNNTTC | 1 cut(s) | 761 |
| MseI | TTAA | 1 cut(s) | 770 |
| MslI | CAYNNNNRTG | 2 cut(s) | 572, 588 |
| MspI | CCGG | 7 cut(s) | 39, 60, 79, 106, 267, 303, 340 |
| MspR9I | CCNGG | 2 cut(s) | 267, 488 |
| MunI | CAATTG | 1 cut(s) | 389 |
| MvaI | CCWGG | 1 cut(s) | 488 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 20, 165, 220, 545, 554 |
| NciI | CCSGG | 1 cut(s) | 267 |
| NcoI | CCATGG | 1 cut(s) | 182 |
| NdeI | CATATG | 1 cut(s) | 585 |
| NdeII | GATC | 1 cut(s) | 800 |
| NlaIII | CATG | 3 cut(s) | 186, 244, 708 |
| NmuCI | GTSAC | 3 cut(s) | 316, 674, 700 |
| PaeR7I | CTCGAG | 1 cut(s) | 476 |
| PagI | TCATGA | 1 cut(s) | 240 |
| PdmI | GAANNNNTTC | 1 cut(s) | 761 |
| PfeI | GAWTC | 4 cut(s) | 29, 459, 472, 593 |
| PinAI | ACCGGT | 1 cut(s) | 59 |
| PkrI | GCNGC | 1 cut(s) | 538 |
| PleI | GAGTC | 1 cut(s) | 671 |
| PpsI | GAGTC | 1 cut(s) | 671 |
| Psp6I | CCWGG | 1 cut(s) | 486 |
| PspGI | CCWGG | 1 cut(s) | 486 |
| PspPI | GGNCC | 1 cut(s) | 206 |
| RseI | CAYNNNNRTG | 2 cut(s) | 572, 588 |
| SaqAI | TTAA | 1 cut(s) | 770 |
| SatI | GCNGC | 1 cut(s) | 537 |
| Sau3AI | GATC | 1 cut(s) | 800 |
| Sau96I | GGNCC | 1 cut(s) | 206 |
| SchI | GAGTC | 1 cut(s) | 671 |
| ScrFI | CCNGG | 2 cut(s) | 267, 488 |
| SfaNI | GCATC | 3 cut(s) | 232, 451, 798 |
| SfcI | CTRYAG | 1 cut(s) | 96 |
| Sfr274I | CTCGAG | 1 cut(s) | 476 |
| SlaI | CTCGAG | 1 cut(s) | 476 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 572, 588 |
| SmlI | CTYRAG | 4 cut(s) | 18, 446, 476, 513 |
| SmoI | CTYRAG | 4 cut(s) | 18, 446, 476, 513 |
| SpeI | ACTAGT | 1 cut(s) | 578 |
| Sse9I | AATT | 4 cut(s) | 374, 389, 498, 784 |
| SsiI | CCGC | 2 cut(s) | 436, 718 |
| SspMI | CTAG | 4 cut(s) | 464, 483, 579, 695 |
| StyD4I | CCNGG | 2 cut(s) | 265, 486 |
| StyI | CCWWGG | 1 cut(s) | 182 |
| TaaI | ACNGT | 2 cut(s) | 247, 254 |
| TaiI | ACGT | 4 cut(s) | 220, 237, 495, 672 |
| TaqI | TCGA | 3 cut(s) | 353, 477, 651 |
| TaqII | GACCGA | 1 cut(s) | 268 |
| TasI | AATT | 4 cut(s) | 374, 389, 498, 784 |
| TfiI | GAWTC | 4 cut(s) | 29, 459, 472, 593 |
| Tru1I | TTAA | 1 cut(s) | 770 |
| Tru9I | TTAA | 1 cut(s) | 770 |
| TscAI | CASTG | 1 cut(s) | 216 |
| TseFI | GTSAC | 3 cut(s) | 316, 674, 700 |
| TseI | GCWGC | 1 cut(s) | 536 |
| Tsp45I | GTSAC | 3 cut(s) | 316, 674, 700 |
| TspGWI | ACGGA | 1 cut(s) | 662 |
| TspRI | CASTG | 1 cut(s) | 216 |
| XapI | RAATTY | 1 cut(s) | 784 |
| XhoI | CTCGAG | 1 cut(s) | 476 |
| XmnI | GAANNNNTTC | 1 cut(s) | 761 |
| XspI | CTAG | 4 cut(s) | 464, 483, 579, 695 |