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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 57 |
| AccB1I | GGYRCC | 1 cut(s) | 57 |
| AciI | CCGC | 5 cut(s) | 52, 55, 415, 697, 1320 |
| AclWI | GGATC | 1 cut(s) | 957 |
| AcoI | YGGCCR | 2 cut(s) | 91, 1165 |
| AcsI | RAATTY | 2 cut(s) | 312, 764 |
| AfaI | GTAC | 1 cut(s) | 584 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 96 |
| AgsI | TTSAA | 2 cut(s) | 712, 1216 |
| AjiI | CACGTC | 4 cut(s) | 146, 170, 218, 472 |
| AjnI | CCWGG | 2 cut(s) | 34, 465 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 624, 656 |
| AluBI | AGCT | 7 cut(s) | 103, 202, 491, 497, 898, 1301, 1352 |
| AluI | AGCT | 7 cut(s) | 103, 202, 491, 497, 898, 1301, 1352 |
| Alw21I | GWGCWC | 2 cut(s) | 900, 1303 |
| Alw26I | GTCTC | 1 cut(s) | 813 |
| AlwI | GGATC | 1 cut(s) | 957 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 49, 202 |
| Ama87I | CYCGRG | 1 cut(s) | 455 |
| AoxI | GGCC | 4 cut(s) | 91, 133, 429, 1165 |
| ApeKI | GCWGC | 3 cut(s) | 117, 199, 515 |
| ApoI | RAATTY | 2 cut(s) | 312, 764 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 544, 576 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 741 |
| AspLEI | GCGC | 4 cut(s) | 908, 1007, 1023, 1222 |
| AspS9I | GGNCC | 4 cut(s) | 134, 157, 181, 1067 |
| AsuHPI | GGTGA | 2 cut(s) | 1091, 1309 |
| AvaI | CYCGRG | 1 cut(s) | 455 |
| AvaII | GGWCC | 3 cut(s) | 157, 181, 1067 |
| BaeGI | GKGCMC | 1 cut(s) | 1288 |
| BalI | TGGCCA | 1 cut(s) | 1167 |
| BanI | GGYRCC | 1 cut(s) | 57 |
| BanII | GRGCYC | 2 cut(s) | 900, 1303 |
| BauI | CACGAG | 1 cut(s) | 1302 |
| BbsI | GAAGAC | 1 cut(s) | 609 |
| Bbv12I | GWGCWC | 2 cut(s) | 900, 1303 |
| BbvI | GCAGC | 3 cut(s) | 129, 211, 527 |
| BccI | CCATC | 7 cut(s) | 201, 428, 551, 678, 832, 833, 1206 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 851, 885 |
| BciT130I | CCWGG | 2 cut(s) | 36, 467 |
| BciVI | GTATCC | 1 cut(s) | 439 |
| BcoDI | GTCTC | 1 cut(s) | 813 |
| BfaI | CTAG | 4 cut(s) | 282, 462, 674, 1388 |
| BfoI | RGCGCY | 3 cut(s) | 909, 1024, 1223 |
| BfuAI | ACCTGC | 1 cut(s) | 57 |
| BfuI | GTATCC | 1 cut(s) | 439 |
| BisI | GCNGC | 5 cut(s) | 53, 56, 118, 200, 516 |
| BlsI | GCNGC | 5 cut(s) | 54, 57, 119, 201, 517 |
| Bme1390I | CCNGG | 2 cut(s) | 36, 467 |
| Bme18I | GGWCC | 3 cut(s) | 157, 181, 1067 |
| BmeT110I | CYCGRG | 1 cut(s) | 455 |
| BmgBI | CACGTC | 4 cut(s) | 146, 170, 218, 472 |
| BmgT120I | GGNCC | 4 cut(s) | 134, 157, 181, 1067 |
| BmiI | GGNNCC | 6 cut(s) | 59, 159, 182, 183, 1121, 1180 |
| BmrFI | CCNGG | 2 cut(s) | 36, 467 |
| BmrI | ACTGGG | 1 cut(s) | 250 |
| BmsI | GCATC | 1 cut(s) | 232 |
| BmuI | ACTGGG | 1 cut(s) | 250 |
| BpiI | GAAGAC | 1 cut(s) | 609 |
| BpuEI | CTTGAG | 2 cut(s) | 410, 477 |
| Bsa29I | ATCGAT | 1 cut(s) | 861 |
| BsaJI | CCNNGG | 1 cut(s) | 966 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 96 |
| Bse118I | RCCGGY | 3 cut(s) | 89, 131, 265 |
| Bse1I | ACTGG | 4 cut(s) | 101, 256, 385, 580 |
| BseBI | CCWGG | 2 cut(s) | 36, 467 |
| BseCI | ATCGAT | 1 cut(s) | 861 |
| BseDI | CCNNGG | 1 cut(s) | 966 |
| BseGI | GGATG | 3 cut(s) | 342, 546, 936 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 96 |
| BseNI | ACTGG | 4 cut(s) | 101, 256, 385, 580 |
| BseSI | GKGCMC | 1 cut(s) | 1288 |
| BseXI | GCAGC | 3 cut(s) | 129, 211, 527 |
| BshFI | GGCC | 4 cut(s) | 93, 135, 431, 1167 |
| BshNI | GGYRCC | 1 cut(s) | 57 |
| BshVI | ATCGAT | 1 cut(s) | 861 |
| BsiHKAI | GWGCWC | 2 cut(s) | 900, 1303 |
| BsiHKCI | CYCGRG | 1 cut(s) | 455 |
| BsiSI | CCGG | 4 cut(s) | 74, 90, 132, 266 |
| BslFI | GGGAC | 1 cut(s) | 194 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 96 |
| BsmAI | GTCTC | 1 cut(s) | 813 |
| BsmFI | GGGAC | 1 cut(s) | 194 |
| BsnI | GGCC | 4 cut(s) | 93, 135, 431, 1167 |
| BsoBI | CYCGRG | 1 cut(s) | 455 |
| Bsp1286I | GDGCHC | 3 cut(s) | 900, 1288, 1303 |
| Bsp143I | GATC | 5 cut(s) | 307, 780, 962, 1372, 1384 |
| BspACI | CCGC | 5 cut(s) | 52, 55, 415, 697, 1320 |
| BspANI | GGCC | 4 cut(s) | 93, 135, 431, 1167 |
| BspDI | ATCGAT | 1 cut(s) | 861 |
| BspHI | TCATGA | 2 cut(s) | 892, 928 |
| BspLI | GGNNCC | 6 cut(s) | 59, 159, 182, 183, 1121, 1180 |
| BspMI | ACCTGC | 1 cut(s) | 57 |
| BspPI | GGATC | 1 cut(s) | 957 |
| BspT107I | GGYRCC | 1 cut(s) | 57 |
| BsrFI | RCCGGY | 3 cut(s) | 89, 131, 265 |
| BsrI | ACTGG | 4 cut(s) | 101, 256, 385, 580 |
| BssAI | RCCGGY | 3 cut(s) | 89, 131, 265 |
| BssECI | CCNNGG | 1 cut(s) | 966 |
| BssMI | GATC | 5 cut(s) | 307, 780, 962, 1372, 1384 |
| BssSI | CACGAG | 1 cut(s) | 1302 |
| Bst2BI | CACGAG | 1 cut(s) | 1302 |
| Bst2UI | CCWGG | 2 cut(s) | 36, 467 |
| Bst4CI | ACNGT | 1 cut(s) | 481 |
| Bst6I | CTCTTC | 1 cut(s) | 1120 |
| BstC8I | GCNNGC | 1 cut(s) | 489 |
| BstDEI | CTNAG | 4 cut(s) | 520, 846, 1043, 1191 |
| BstDSI | CCRYGG | 1 cut(s) | 966 |
| BstF5I | GGATG | 3 cut(s) | 342, 546, 936 |
| BstH2I | RGCGCY | 3 cut(s) | 909, 1024, 1223 |
| BstHHI | GCGC | 4 cut(s) | 908, 1007, 1023, 1222 |
| BstKTI | GATC | 5 cut(s) | 310, 783, 965, 1375, 1387 |
| BstMAI | GTCTC | 1 cut(s) | 813 |
| BstMBI | GATC | 5 cut(s) | 307, 780, 962, 1372, 1384 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 148, 220, 503, 512, 1027, 1217, 1328, 1349 |
| BstNI | CCWGG | 2 cut(s) | 36, 467 |
| BstSCI | CCNGG | 2 cut(s) | 34, 465 |
| BstSLI | GKGCMC | 1 cut(s) | 1288 |
| BstV1I | GCAGC | 3 cut(s) | 129, 211, 527 |
| BstV2I | GAAGAC | 1 cut(s) | 609 |
| BstX2I | RGATCY | 1 cut(s) | 962 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1175 |
| BstYI | RGATCY | 1 cut(s) | 962 |
| Bsu15I | ATCGAT | 1 cut(s) | 861 |
| BsuI | GTATCC | 1 cut(s) | 439 |
| BsuRI | GGCC | 4 cut(s) | 93, 135, 431, 1167 |
| BsuTUI | ATCGAT | 1 cut(s) | 861 |
| BtgI | CCRYGG | 1 cut(s) | 966 |
| BtgZI | GCGATG | 1 cut(s) | 806 |
| BtrI | CACGTC | 4 cut(s) | 146, 170, 218, 472 |
| BtsCI | GGATG | 3 cut(s) | 342, 546, 936 |
| BtsI | GCAGTG | 2 cut(s) | 137, 209 |
| BtsIMutI | CAGTG | 3 cut(s) | 94, 137, 209 |
| BveI | ACCTGC | 1 cut(s) | 57 |
| Cac8I | GCNNGC | 1 cut(s) | 489 |
| CaiI | CAGNNNCTG | 2 cut(s) | 49, 202 |
| CciI | TCATGA | 2 cut(s) | 892, 928 |
| CfoI | GCGC | 4 cut(s) | 908, 1007, 1023, 1222 |
| Cfr10I | RCCGGY | 3 cut(s) | 89, 131, 265 |
| Cfr13I | GGNCC | 4 cut(s) | 134, 157, 181, 1067 |
| ClaI | ATCGAT | 1 cut(s) | 861 |
| CseI | GACGC | 1 cut(s) | 1217 |
| Csp6I | GTAC | 1 cut(s) | 583 |
| CviAII | CATG | 4 cut(s) | 233, 893, 929, 1169 |
| CviQI | GTAC | 1 cut(s) | 583 |
| DdeI | CTNAG | 4 cut(s) | 520, 846, 1043, 1191 |
| DpnI | GATC | 5 cut(s) | 309, 782, 964, 1374, 1386 |
| DpnII | GATC | 5 cut(s) | 307, 780, 962, 1372, 1384 |
| EaeI | YGGCCR | 2 cut(s) | 91, 1165 |
| Eam1104I | CTCTTC | 1 cut(s) | 1120 |
| EarI | CTCTTC | 1 cut(s) | 1120 |
| EciI | GGCGGA | 1 cut(s) | 404 |
| Ecl136II | GAGCTC | 2 cut(s) | 898, 1301 |
| Eco24I | GRGCYC | 2 cut(s) | 900, 1303 |
| Eco32I | GATATC | 1 cut(s) | 412 |
| Eco47I | GGWCC | 3 cut(s) | 157, 181, 1067 |
| Eco53kI | GAGCTC | 2 cut(s) | 898, 1301 |
| Eco88I | CYCGRG | 1 cut(s) | 455 |
| EcoICRI | GAGCTC | 2 cut(s) | 898, 1301 |
| EcoO109I | RGGNCCY | 2 cut(s) | 157, 181 |
| EcoRI | GAATTC | 1 cut(s) | 764 |
| EcoRII | CCWGG | 2 cut(s) | 34, 465 |
| EcoRV | GATATC | 1 cut(s) | 412 |
| EcoT38I | GRGCYC | 2 cut(s) | 900, 1303 |
| FaeI | CATG | 4 cut(s) | 236, 896, 932, 1172 |
| FaqI | GGGAC | 1 cut(s) | 194 |
| FatI | CATG | 4 cut(s) | 232, 892, 928, 1168 |
| Fnu4HI | GCNGC | 5 cut(s) | 53, 56, 118, 200, 516 |
| FokI | GGATG | 3 cut(s) | 349, 533, 923 |
| FriOI | GRGCYC | 2 cut(s) | 900, 1303 |
| Fsp4HI | GCNGC | 5 cut(s) | 53, 56, 118, 200, 516 |
| FspBI | CTAG | 4 cut(s) | 282, 462, 674, 1388 |
| GlaI | GCGC | 4 cut(s) | 907, 1006, 1022, 1221 |
| GluI | GCNGC | 5 cut(s) | 53, 56, 118, 200, 516 |
| HaeII | RGCGCY | 3 cut(s) | 909, 1024, 1223 |
| HaeIII | GGCC | 4 cut(s) | 93, 135, 431, 1167 |
| HapII | CCGG | 4 cut(s) | 74, 90, 132, 266 |
| HgaI | GACGC | 1 cut(s) | 1217 |
| HhaI | GCGC | 4 cut(s) | 908, 1007, 1023, 1222 |
| Hin1II | CATG | 4 cut(s) | 236, 896, 932, 1172 |
| Hin6I | GCGC | 4 cut(s) | 906, 1005, 1021, 1220 |
| HinP1I | GCGC | 4 cut(s) | 906, 1005, 1021, 1220 |
| HincII | GTYRAC | 4 cut(s) | 173, 250, 261, 271 |
| HindII | GTYRAC | 4 cut(s) | 173, 250, 261, 271 |
| HindIII | AAGCTT | 1 cut(s) | 495 |
| HinfI | GANTC | 8 cut(s) | 31, 39, 438, 451, 572, 656, 858, 879 |
| HpaII | CCGG | 4 cut(s) | 74, 90, 132, 266 |
| HphI | GGTGA | 2 cut(s) | 1091, 1309 |
| Hpy166II | GTNNAC | 5 cut(s) | 173, 250, 261, 271, 1133 |
| Hpy188I | TCNGA | 3 cut(s) | 294, 320, 987 |
| Hpy8I | GTNNAC | 5 cut(s) | 173, 250, 261, 271, 1133 |
| Hpy99I | CGWCG | 1 cut(s) | 324 |
| HpyAV | CCTTC | 1 cut(s) | 606 |
| HpyCH4III | ACNGT | 1 cut(s) | 481 |
| HpyCH4IV | ACGT | 6 cut(s) | 145, 169, 217, 471, 648, 1135 |
| HpyCH4V | TGCA | 2 cut(s) | 833, 872 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 148, 220, 503, 512, 1027, 1217, 1328, 1349 |
| HpyF3I | CTNAG | 4 cut(s) | 520, 846, 1043, 1191 |
| HpySE526I | ACGT | 6 cut(s) | 145, 169, 217, 471, 648, 1135 |
| Hsp92II | CATG | 4 cut(s) | 236, 896, 932, 1172 |
| HspAI | GCGC | 4 cut(s) | 906, 1005, 1021, 1220 |
| KflI | GGGWCCC | 1 cut(s) | 181 |
| Kzo9I | GATC | 5 cut(s) | 307, 780, 962, 1372, 1384 |
| LmnI | GCTCC | 3 cut(s) | 108, 370, 1184 |
| Lsp1109I | GCAGC | 3 cut(s) | 129, 211, 527 |
| LweI | GCATC | 1 cut(s) | 232 |
| MaeI | CTAG | 4 cut(s) | 282, 462, 674, 1388 |
| MaeII | ACGT | 6 cut(s) | 145, 169, 217, 471, 648, 1135 |
| MaeIII | GTNAC | 3 cut(s) | 341, 653, 1315 |
| MalI | GATC | 5 cut(s) | 309, 782, 964, 1374, 1386 |
| MboI | GATC | 5 cut(s) | 307, 780, 962, 1372, 1384 |
| MboII | GAAGA | 8 cut(s) | 611, 614, 644, 958, 1137, 1319, 1382, 1391 |
| MflI | RGATCY | 1 cut(s) | 962 |
| MhlI | GDGCHC | 3 cut(s) | 900, 1288, 1303 |
| MlsI | TGGCCA | 1 cut(s) | 1167 |
| MluCI | AATT | 7 cut(s) | 312, 353, 552, 764, 955, 994, 1311 |
| MluNI | TGGCCA | 1 cut(s) | 1167 |
| MlyI | GAGTC | 1 cut(s) | 650 |
| MmeI | TCCRAC | 2 cut(s) | 317, 343 |
| Mox20I | TGGCCA | 1 cut(s) | 1167 |
| MroXI | GAANNNNTTC | 1 cut(s) | 741 |
| MscI | TGGCCA | 1 cut(s) | 1167 |
| MseI | TTAA | 4 cut(s) | 20, 750, 758, 1095 |
| MslI | CAYNNNNRTG | 4 cut(s) | 567, 941, 1173, 1203 |
| Msp20I | TGGCCA | 1 cut(s) | 1167 |
| MspA1I | CMGCKG | 1 cut(s) | 202 |
| MspI | CCGG | 4 cut(s) | 74, 90, 132, 266 |
| MspR9I | CCNGG | 2 cut(s) | 36, 467 |
| MvaI | CCWGG | 2 cut(s) | 36, 467 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 148, 220, 503, 512, 1027, 1217, 1328, 1349 |
| NdeII | GATC | 5 cut(s) | 307, 780, 962, 1372, 1384 |
| NlaIII | CATG | 4 cut(s) | 236, 896, 932, 1172 |
| NlaIV | GGNNCC | 6 cut(s) | 59, 159, 182, 183, 1121, 1180 |
| NmuCI | GTSAC | 2 cut(s) | 653, 1315 |
| PaeR7I | CTCGAG | 1 cut(s) | 455 |
| PagI | TCATGA | 2 cut(s) | 892, 928 |
| PdmI | GAANNNNTTC | 1 cut(s) | 741 |
| PfeI | GAWTC | 7 cut(s) | 31, 39, 438, 451, 572, 858, 879 |
| PfoI | TCCNGGA | 1 cut(s) | 34 |
| PkrI | GCNGC | 5 cut(s) | 54, 57, 119, 201, 517 |
| PleI | GAGTC | 1 cut(s) | 650 |
| PpsI | GAGTC | 1 cut(s) | 650 |
| PpuMI | RGGWCCY | 2 cut(s) | 157, 181 |
| Psp124BI | GAGCTC | 2 cut(s) | 900, 1303 |
| Psp5II | RGGWCCY | 2 cut(s) | 157, 181 |
| Psp6I | CCWGG | 2 cut(s) | 34, 465 |
| PspGI | CCWGG | 2 cut(s) | 34, 465 |
| PspN4I | GGNNCC | 6 cut(s) | 59, 159, 182, 183, 1121, 1180 |
| PspPI | GGNCC | 4 cut(s) | 134, 157, 181, 1067 |
| PspPPI | RGGWCCY | 2 cut(s) | 157, 181 |
| PstNI | CAGNNNCTG | 2 cut(s) | 49, 202 |
| PsuI | RGATCY | 1 cut(s) | 962 |
| PvuII | CAGCTG | 1 cut(s) | 202 |
| RsaI | GTAC | 1 cut(s) | 584 |
| RsaNI | GTAC | 1 cut(s) | 583 |
| RseI | CAYNNNNRTG | 4 cut(s) | 567, 941, 1173, 1203 |
| SacI | GAGCTC | 2 cut(s) | 900, 1303 |
| SaqAI | TTAA | 4 cut(s) | 20, 750, 758, 1095 |
| SatI | GCNGC | 5 cut(s) | 53, 56, 118, 200, 516 |
| Sau3AI | GATC | 5 cut(s) | 307, 780, 962, 1372, 1384 |
| Sau96I | GGNCC | 4 cut(s) | 134, 157, 181, 1067 |
| SchI | GAGTC | 1 cut(s) | 650 |
| ScrFI | CCNGG | 2 cut(s) | 36, 467 |
| SduI | GDGCHC | 3 cut(s) | 900, 1288, 1303 |
| SfaNI | GCATC | 1 cut(s) | 232 |
| Sfr274I | CTCGAG | 1 cut(s) | 455 |
| SinI | GGWCC | 3 cut(s) | 157, 181, 1067 |
| SlaI | CTCGAG | 1 cut(s) | 455 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 567, 941, 1173, 1203 |
| SmlI | CTYRAG | 3 cut(s) | 425, 455, 492 |
| SmoI | CTYRAG | 3 cut(s) | 425, 455, 492 |
| Sse9I | AATT | 7 cut(s) | 312, 353, 552, 764, 955, 994, 1311 |
| SsiI | CCGC | 5 cut(s) | 52, 55, 415, 697, 1320 |
| SspI | AATATT | 1 cut(s) | 125 |
| SspMI | CTAG | 4 cut(s) | 282, 462, 674, 1388 |
| SstI | GAGCTC | 2 cut(s) | 900, 1303 |
| StyD4I | CCNGG | 2 cut(s) | 34, 465 |
| TaaI | ACNGT | 1 cut(s) | 481 |
| TaiI | ACGT | 6 cut(s) | 148, 172, 220, 474, 651, 1138 |
| TaqI | TCGA | 8 cut(s) | 306, 332, 456, 630, 856, 861, 959, 1261 |
| TasI | AATT | 7 cut(s) | 312, 353, 552, 764, 955, 994, 1311 |
| TauI | GCSGC | 2 cut(s) | 55, 58 |
| TfiI | GAWTC | 7 cut(s) | 31, 39, 438, 451, 572, 858, 879 |
| Tru1I | TTAA | 4 cut(s) | 20, 750, 758, 1095 |
| Tru9I | TTAA | 4 cut(s) | 20, 750, 758, 1095 |
| TscAI | CASTG | 3 cut(s) | 101, 144, 216 |
| TseFI | GTSAC | 2 cut(s) | 653, 1315 |
| TseI | GCWGC | 3 cut(s) | 117, 199, 515 |
| Tsp45I | GTSAC | 2 cut(s) | 653, 1315 |
| TspDTI | ATGAA | 4 cut(s) | 402, 612, 881, 926 |
| TspGWI | ACGGA | 3 cut(s) | 641, 955, 1132 |
| TspRI | CASTG | 3 cut(s) | 101, 144, 216 |
| VpaK11BI | GGWCC | 3 cut(s) | 157, 181, 1067 |
| XapI | RAATTY | 2 cut(s) | 312, 764 |
| XbaI | TCTAGA | 1 cut(s) | 1387 |
| XhoI | CTCGAG | 1 cut(s) | 455 |
| XmnI | GAANNNNTTC | 1 cut(s) | 741 |
| XspI | CTAG | 4 cut(s) | 282, 462, 674, 1388 |