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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 390, 435 |
| AatII | GACGTC | 1 cut(s) | 634 |
| AccB1I | GGYRCC | 1 cut(s) | 611 |
| AccBSI | CCGCTC | 1 cut(s) | 466 |
| AciI | CCGC | 3 cut(s) | 466, 514, 532 |
| AclWI | GGATC | 2 cut(s) | 323, 715 |
| AcoI | YGGCCR | 1 cut(s) | 598 |
| AcsI | RAATTY | 1 cut(s) | 114 |
| AcyI | GRCGYC | 1 cut(s) | 631 |
| AfaI | GTAC | 1 cut(s) | 26 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 198, 452, 453, 523, 603 |
| AflIII | ACRYGT | 1 cut(s) | 551 |
| AgsI | TTSAA | 5 cut(s) | 112, 119, 148, 422, 716 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 215, 590 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 60, 92, 291, 323 |
| AluBI | AGCT | 5 cut(s) | 158, 176, 232, 334, 356 |
| AluI | AGCT | 5 cut(s) | 158, 176, 232, 334, 356 |
| Alw26I | GTCTC | 1 cut(s) | 268 |
| AlwI | GGATC | 2 cut(s) | 323, 715 |
| AoxI | GGCC | 4 cut(s) | 398, 529, 565, 598 |
| ApoI | RAATTY | 1 cut(s) | 114 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 621, 653 |
| AseI | ATTAAT | 1 cut(s) | 339 |
| AspS9I | GGNCC | 1 cut(s) | 503 |
| AsuHPI | GGTGA | 1 cut(s) | 130 |
| AvaII | GGWCC | 1 cut(s) | 503 |
| BanI | GGYRCC | 1 cut(s) | 611 |
| BanII | GRGCYC | 1 cut(s) | 204 |
| BauI | CACGAG | 2 cut(s) | 319, 377 |
| BcoDI | GTCTC | 1 cut(s) | 268 |
| BfaI | CTAG | 2 cut(s) | 45, 65 |
| BfmI | CTRYAG | 1 cut(s) | 351 |
| BisI | GCNGC | 1 cut(s) | 532 |
| BlsI | GCNGC | 1 cut(s) | 533 |
| Bme18I | GGWCC | 1 cut(s) | 503 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 215, 590 |
| BmgT120I | GGNCC | 1 cut(s) | 503 |
| BmiI | GGNNCC | 2 cut(s) | 470, 613 |
| BmsI | GCATC | 4 cut(s) | 31, 646, 668, 679 |
| BpuEI | CTTGAG | 1 cut(s) | 648 |
| BsaAI | YACGTR | 1 cut(s) | 554 |
| BsaBI | GATNNNNATC | 1 cut(s) | 706 |
| BsaHI | GRCGYC | 1 cut(s) | 631 |
| BsaJI | CCNNGG | 1 cut(s) | 669 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 198, 452, 453, 523, 603 |
| Bse118I | RCCGGY | 1 cut(s) | 596 |
| Bse3DI | GCAATG | 1 cut(s) | 88 |
| Bse8I | GATNNNNATC | 1 cut(s) | 706 |
| BseDI | CCNNGG | 1 cut(s) | 669 |
| BseGI | GGATG | 1 cut(s) | 46 |
| BseJI | GATNNNNATC | 1 cut(s) | 706 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 198, 452, 453, 523, 603 |
| BseMI | GCAATG | 1 cut(s) | 88 |
| BseMII | CTCAG | 1 cut(s) | 279 |
| BseRI | GAGGAG | 2 cut(s) | 89, 594 |
| BshFI | GGCC | 4 cut(s) | 400, 531, 567, 600 |
| BshNI | GGYRCC | 1 cut(s) | 611 |
| BsiSI | CCGG | 1 cut(s) | 597 |
| BslFI | GGGAC | 1 cut(s) | 498 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 198, 452, 453, 523, 603 |
| BsmAI | GTCTC | 1 cut(s) | 268 |
| BsmFI | GGGAC | 1 cut(s) | 498 |
| BsnI | GGCC | 4 cut(s) | 400, 531, 567, 600 |
| Bsp1286I | GDGCHC | 1 cut(s) | 204 |
| Bsp143I | GATC | 2 cut(s) | 315, 707 |
| BspACI | CCGC | 3 cut(s) | 466, 514, 532 |
| BspANI | GGCC | 4 cut(s) | 400, 531, 567, 600 |
| BspCNI | CTCAG | 1 cut(s) | 278 |
| BspLI | GGNNCC | 2 cut(s) | 470, 613 |
| BspPI | GGATC | 2 cut(s) | 323, 715 |
| BspQI | GCTCTTC | 1 cut(s) | 63 |
| BspT107I | GGYRCC | 1 cut(s) | 611 |
| BsrBI | CCGCTC | 1 cut(s) | 466 |
| BsrDI | GCAATG | 1 cut(s) | 88 |
| BsrFI | RCCGGY | 1 cut(s) | 596 |
| BssAI | RCCGGY | 1 cut(s) | 596 |
| BssECI | CCNNGG | 1 cut(s) | 669 |
| BssMI | GATC | 2 cut(s) | 315, 707 |
| BssNI | GRCGYC | 1 cut(s) | 631 |
| BssSI | CACGAG | 2 cut(s) | 319, 377 |
| BssT1I | CCWWGG | 1 cut(s) | 669 |
| Bst2BI | CACGAG | 2 cut(s) | 319, 377 |
| Bst6I | CTCTTC | 1 cut(s) | 63 |
| BstACI | GRCGYC | 1 cut(s) | 631 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 656 |
| BstBAI | YACGTR | 1 cut(s) | 554 |
| BstC8I | GCNNGC | 2 cut(s) | 598, 694 |
| BstDEI | CTNAG | 2 cut(s) | 265, 411 |
| BstF5I | GGATG | 1 cut(s) | 46 |
| BstKTI | GATC | 2 cut(s) | 318, 710 |
| BstMAI | GTCTC | 1 cut(s) | 268 |
| BstMBI | GATC | 2 cut(s) | 315, 707 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 70, 564, 656, 665 |
| BstNSI | RCATGY | 1 cut(s) | 696 |
| BstSFI | CTRYAG | 1 cut(s) | 351 |
| BstX2I | RGATCY | 1 cut(s) | 707 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 608, 704 |
| BstYI | RGATCY | 1 cut(s) | 707 |
| BsuRI | GGCC | 4 cut(s) | 400, 531, 567, 600 |
| BtsCI | GGATG | 1 cut(s) | 46 |
| Cac8I | GCNNGC | 2 cut(s) | 598, 694 |
| Cfr10I | RCCGGY | 1 cut(s) | 596 |
| Cfr13I | GGNCC | 1 cut(s) | 503 |
| Csp6I | GTAC | 1 cut(s) | 25 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 241, 276 |
| CviAII | CATG | 5 cut(s) | 28, 193, 365, 647, 693 |
| CviQI | GTAC | 1 cut(s) | 25 |
| DdeI | CTNAG | 2 cut(s) | 265, 411 |
| DpnI | GATC | 2 cut(s) | 317, 709 |
| DpnII | GATC | 2 cut(s) | 315, 707 |
| DriI | GACNNNNNGTC | 2 cut(s) | 215, 590 |
| EaeI | YGGCCR | 1 cut(s) | 598 |
| Eam1104I | CTCTTC | 1 cut(s) | 63 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 215, 590 |
| EarI | CTCTTC | 1 cut(s) | 63 |
| Eco130I | CCWWGG | 1 cut(s) | 669 |
| Eco147I | AGGCCT | 1 cut(s) | 400 |
| Eco24I | GRGCYC | 1 cut(s) | 204 |
| Eco47I | GGWCC | 1 cut(s) | 503 |
| EcoT14I | CCWWGG | 1 cut(s) | 669 |
| EcoT22I | ATGCAT | 2 cut(s) | 661, 694 |
| EcoT38I | GRGCYC | 1 cut(s) | 204 |
| ErhI | CCWWGG | 1 cut(s) | 669 |
| FaeI | CATG | 5 cut(s) | 31, 196, 368, 650, 696 |
| FaqI | GGGAC | 1 cut(s) | 498 |
| FatI | CATG | 5 cut(s) | 27, 192, 364, 646, 692 |
| Fnu4HI | GCNGC | 1 cut(s) | 532 |
| FokI | GGATG | 1 cut(s) | 53 |
| FriOI | GRGCYC | 1 cut(s) | 204 |
| Fsp4HI | GCNGC | 1 cut(s) | 532 |
| FspBI | CTAG | 2 cut(s) | 45, 65 |
| GluI | GCNGC | 1 cut(s) | 532 |
| HaeIII | GGCC | 4 cut(s) | 400, 531, 567, 600 |
| HapII | CCGG | 1 cut(s) | 597 |
| Hin1I | GRCGYC | 1 cut(s) | 631 |
| Hin1II | CATG | 5 cut(s) | 31, 196, 368, 650, 696 |
| HinfI | GANTC | 2 cut(s) | 92, 135 |
| HpaII | CCGG | 1 cut(s) | 597 |
| HphI | GGTGA | 1 cut(s) | 130 |
| Hpy166II | GTNNAC | 1 cut(s) | 209 |
| Hpy188I | TCNGA | 3 cut(s) | 17, 172, 407 |
| Hpy188III | TCNNGA | 3 cut(s) | 319, 379, 422 |
| Hpy8I | GTNNAC | 1 cut(s) | 209 |
| HpyAV | CCTTC | 2 cut(s) | 265, 521 |
| HpyCH4IV | ACGT | 3 cut(s) | 553, 571, 631 |
| HpyCH4V | TGCA | 5 cut(s) | 443, 459, 650, 659, 692 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 70, 564, 656, 665 |
| HpyF3I | CTNAG | 2 cut(s) | 265, 411 |
| HpySE526I | ACGT | 3 cut(s) | 553, 571, 631 |
| Hsp92I | GRCGYC | 1 cut(s) | 631 |
| Hsp92II | CATG | 5 cut(s) | 31, 196, 368, 650, 696 |
| KroI | GCCGGC | 1 cut(s) | 596 |
| KroNI | GCCGGC | 1 cut(s) | 598 |
| Kzo9I | GATC | 2 cut(s) | 315, 707 |
| LguI | GCTCTTC | 1 cut(s) | 63 |
| LmnI | GCTCC | 3 cut(s) | 123, 223, 463 |
| LpnPI | CCDG | 3 cut(s) | 228, 414, 610 |
| LweI | GCATC | 4 cut(s) | 31, 646, 668, 679 |
| MaeI | CTAG | 2 cut(s) | 45, 65 |
| MaeII | ACGT | 3 cut(s) | 553, 571, 631 |
| MaeIII | GTNAC | 1 cut(s) | 217 |
| MalI | GATC | 2 cut(s) | 317, 709 |
| MbiI | CCGCTC | 1 cut(s) | 466 |
| MboI | GATC | 2 cut(s) | 315, 707 |
| MboII | GAAGA | 2 cut(s) | 80, 394 |
| MflI | RGATCY | 1 cut(s) | 707 |
| MhlI | GDGCHC | 1 cut(s) | 204 |
| MluCI | AATT | 9 cut(s) | 50, 114, 166, 234, 336, 385, 430, 477, 635 |
| MlyI | GAGTC | 1 cut(s) | 86 |
| MmeI | TCCRAC | 2 cut(s) | 385, 646 |
| Mph1103I | ATGCAT | 2 cut(s) | 661, 694 |
| MroNI | GCCGGC | 1 cut(s) | 596 |
| MseI | TTAA | 2 cut(s) | 339, 480 |
| MslI | CAYNNNNRTG | 4 cut(s) | 369, 606, 687, 702 |
| MspI | CCGG | 1 cut(s) | 597 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 70, 564, 656, 665 |
| NaeI | GCCGGC | 1 cut(s) | 598 |
| NdeII | GATC | 2 cut(s) | 315, 707 |
| NgoMIV | GCCGGC | 1 cut(s) | 596 |
| NlaIII | CATG | 5 cut(s) | 31, 196, 368, 650, 696 |
| NlaIV | GGNNCC | 2 cut(s) | 470, 613 |
| NmuCI | GTSAC | 1 cut(s) | 217 |
| NsiI | ATGCAT | 2 cut(s) | 661, 694 |
| NspI | RCATGY | 1 cut(s) | 696 |
| PaeI | GCATGC | 1 cut(s) | 696 |
| PceI | AGGCCT | 1 cut(s) | 400 |
| PciSI | GCTCTTC | 1 cut(s) | 63 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 637 |
| PdiI | GCCGGC | 1 cut(s) | 598 |
| PfeI | GAWTC | 1 cut(s) | 135 |
| PkrI | GCNGC | 1 cut(s) | 533 |
| PleI | GAGTC | 1 cut(s) | 86 |
| PpsI | GAGTC | 1 cut(s) | 86 |
| Ppu21I | YACGTR | 1 cut(s) | 554 |
| PshBI | ATTAAT | 1 cut(s) | 339 |
| PsiI | TTATAA | 2 cut(s) | 390, 435 |
| PspN4I | GGNNCC | 2 cut(s) | 470, 613 |
| PspPI | GGNCC | 1 cut(s) | 503 |
| PsuI | RGATCY | 1 cut(s) | 707 |
| RsaI | GTAC | 1 cut(s) | 26 |
| RsaNI | GTAC | 1 cut(s) | 25 |
| RseI | CAYNNNNRTG | 4 cut(s) | 369, 606, 687, 702 |
| SapI | GCTCTTC | 1 cut(s) | 63 |
| SaqAI | TTAA | 2 cut(s) | 339, 480 |
| SatI | GCNGC | 1 cut(s) | 532 |
| Sau3AI | GATC | 2 cut(s) | 315, 707 |
| Sau96I | GGNCC | 1 cut(s) | 503 |
| SchI | GAGTC | 1 cut(s) | 86 |
| SduI | GDGCHC | 1 cut(s) | 204 |
| SfaNI | GCATC | 4 cut(s) | 31, 646, 668, 679 |
| SfcI | CTRYAG | 1 cut(s) | 351 |
| SinI | GGWCC | 1 cut(s) | 503 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 369, 606, 687, 702 |
| SmlI | CTYRAG | 1 cut(s) | 663 |
| SmoI | CTYRAG | 1 cut(s) | 663 |
| SphI | GCATGC | 1 cut(s) | 696 |
| Sse9I | AATT | 9 cut(s) | 50, 114, 166, 234, 336, 385, 430, 477, 635 |
| SseBI | AGGCCT | 1 cut(s) | 400 |
| SsiI | CCGC | 3 cut(s) | 466, 514, 532 |
| SspI | AATATT | 2 cut(s) | 307, 719 |
| SspMI | CTAG | 2 cut(s) | 45, 65 |
| StuI | AGGCCT | 1 cut(s) | 400 |
| StyI | CCWWGG | 1 cut(s) | 669 |
| TaiI | ACGT | 3 cut(s) | 556, 574, 634 |
| TasI | AATT | 9 cut(s) | 50, 114, 166, 234, 336, 385, 430, 477, 635 |
| TatI | WGTACW | 1 cut(s) | 24 |
| TauI | GCSGC | 1 cut(s) | 534 |
| TfiI | GAWTC | 1 cut(s) | 135 |
| Tru1I | TTAA | 2 cut(s) | 339, 480 |
| Tru9I | TTAA | 2 cut(s) | 339, 480 |
| TseFI | GTSAC | 1 cut(s) | 217 |
| Tsp45I | GTSAC | 1 cut(s) | 217 |
| TspDTI | ATGAA | 2 cut(s) | 312, 317 |
| TspGWI | ACGGA | 3 cut(s) | 142, 236, 328 |
| VpaK11BI | GGWCC | 1 cut(s) | 503 |
| VspI | ATTAAT | 1 cut(s) | 339 |
| XapI | RAATTY | 1 cut(s) | 114 |
| XceI | RCATGY | 1 cut(s) | 696 |
| XspI | CTAG | 2 cut(s) | 45, 65 |
| ZraI | GACGTC | 1 cut(s) | 632 |
| Zsp2I | ATGCAT | 2 cut(s) | 661, 694 |