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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 429, 683 |
| AccIII | TCCGGA | 1 cut(s) | 394 |
| AciI | CCGC | 2 cut(s) | 106, 508 |
| AclI | AACGTT | 1 cut(s) | 57 |
| AclWI | GGATC | 2 cut(s) | 296, 653 |
| AcyI | GRCGYC | 2 cut(s) | 430, 588 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 425, 426, 517 |
| AgsI | TTSAA | 1 cut(s) | 121 |
| AluBI | AGCT | 3 cut(s) | 307, 317, 606 |
| AluI | AGCT | 3 cut(s) | 307, 317, 606 |
| Alw21I | GWGCWC | 2 cut(s) | 309, 654 |
| Alw26I | GTCTC | 1 cut(s) | 37 |
| AlwI | GGATC | 2 cut(s) | 296, 653 |
| Aor13HI | TCCGGA | 1 cut(s) | 394 |
| AspLEI | GCGC | 2 cut(s) | 432, 631 |
| AsuHPI | GGTGA | 1 cut(s) | 583 |
| AxyI | CCTNAGG | 1 cut(s) | 720 |
| BanI | GGYRCC | 2 cut(s) | 429, 683 |
| BanII | GRGCYC | 1 cut(s) | 309 |
| BbsI | GAAGAC | 1 cut(s) | 18 |
| Bbv12I | GWGCWC | 2 cut(s) | 309, 654 |
| BccI | CCATC | 3 cut(s) | 87, 241, 487 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 260, 294 |
| BciVI | GTATCC | 1 cut(s) | 451 |
| BcoDI | GTCTC | 1 cut(s) | 37 |
| BfaI | CTAG | 1 cut(s) | 474 |
| BfoI | RGCGCY | 2 cut(s) | 433, 632 |
| BfuI | GTATCC | 1 cut(s) | 451 |
| BmiI | GGNNCC | 3 cut(s) | 431, 530, 685 |
| BmsI | GCATC | 2 cut(s) | 187, 458 |
| BpiI | GAAGAC | 1 cut(s) | 18 |
| Bsa29I | ATCGAT | 1 cut(s) | 270 |
| BsaBI | GATNNNNATC | 1 cut(s) | 695 |
| BsaHI | GRCGYC | 2 cut(s) | 430, 588 |
| BsaI | GGTCTC | 1 cut(s) | 37 |
| BsaJI | CCNNGG | 1 cut(s) | 375 |
| BsaWI | WCCGGW | 1 cut(s) | 394 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 425, 426, 517 |
| Bse21I | CCTNAGG | 1 cut(s) | 720 |
| Bse3DI | GCAATG | 1 cut(s) | 61 |
| Bse8I | GATNNNNATC | 1 cut(s) | 695 |
| BseAI | TCCGGA | 1 cut(s) | 394 |
| BseCI | ATCGAT | 1 cut(s) | 270 |
| BseDI | CCNNGG | 1 cut(s) | 375 |
| BseGI | GGATG | 2 cut(s) | 345, 473 |
| BseJI | GATNNNNATC | 1 cut(s) | 695 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 425, 426, 517 |
| BseMI | GCAATG | 1 cut(s) | 61 |
| BseMII | CTCAG | 1 cut(s) | 639 |
| BshNI | GGYRCC | 2 cut(s) | 429, 683 |
| BshVI | ATCGAT | 1 cut(s) | 270 |
| BsiHKAI | GWGCWC | 2 cut(s) | 309, 654 |
| BsiSI | CCGG | 1 cut(s) | 395 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 425, 426, 517 |
| BsmAI | GTCTC | 1 cut(s) | 37 |
| Bso31I | GGTCTC | 1 cut(s) | 37 |
| Bsp1286I | GDGCHC | 2 cut(s) | 309, 654 |
| Bsp13I | TCCGGA | 1 cut(s) | 394 |
| Bsp143I | GATC | 3 cut(s) | 189, 288, 658 |
| Bsp19I | CCATGG | 1 cut(s) | 375 |
| BspACI | CCGC | 2 cut(s) | 106, 508 |
| BspCNI | CTCAG | 1 cut(s) | 640 |
| BspDI | ATCGAT | 1 cut(s) | 270 |
| BspEI | TCCGGA | 1 cut(s) | 394 |
| BspHI | TCATGA | 1 cut(s) | 301 |
| BspLI | GGNNCC | 3 cut(s) | 431, 530, 685 |
| BspPI | GGATC | 2 cut(s) | 296, 653 |
| BspT107I | GGYRCC | 2 cut(s) | 429, 683 |
| BspTNI | GGTCTC | 1 cut(s) | 37 |
| BsrDI | GCAATG | 1 cut(s) | 61 |
| BssECI | CCNNGG | 1 cut(s) | 375 |
| BssMI | GATC | 3 cut(s) | 189, 288, 658 |
| BssNI | GRCGYC | 2 cut(s) | 430, 588 |
| BssT1I | CCWWGG | 1 cut(s) | 375 |
| Bst4CI | ACNGT | 1 cut(s) | 446 |
| Bst6I | CTCTTC | 1 cut(s) | 529 |
| BstACI | GRCGYC | 2 cut(s) | 430, 588 |
| BstDEI | CTNAG | 5 cut(s) | 255, 452, 600, 648, 720 |
| BstDSI | CCRYGG | 1 cut(s) | 375 |
| BstEII | GGTNACC | 1 cut(s) | 503 |
| BstF5I | GGATG | 2 cut(s) | 345, 473 |
| BstH2I | RGCGCY | 2 cut(s) | 433, 632 |
| BstHHI | GCGC | 2 cut(s) | 432, 631 |
| BstKTI | GATC | 3 cut(s) | 192, 291, 661 |
| BstMAI | GTCTC | 1 cut(s) | 37 |
| BstMBI | GATC | 3 cut(s) | 189, 288, 658 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 436, 626, 722 |
| BstPI | GGTNACC | 1 cut(s) | 503 |
| BstV2I | GAAGAC | 1 cut(s) | 18 |
| BstX2I | RGATCY | 1 cut(s) | 658 |
| BstYI | RGATCY | 1 cut(s) | 658 |
| Bsu15I | ATCGAT | 1 cut(s) | 270 |
| Bsu36I | CCTNAGG | 1 cut(s) | 720 |
| BsuI | GTATCC | 1 cut(s) | 451 |
| BsuTUI | ATCGAT | 1 cut(s) | 270 |
| BtgI | CCRYGG | 1 cut(s) | 375 |
| BtgZI | GCGATG | 1 cut(s) | 215 |
| BtsCI | GGATG | 2 cut(s) | 345, 473 |
| CciI | TCATGA | 1 cut(s) | 301 |
| CfoI | GCGC | 2 cut(s) | 432, 631 |
| ClaI | ATCGAT | 1 cut(s) | 270 |
| CseI | GACGC | 2 cut(s) | 577, 626 |
| CviAII | CATG | 4 cut(s) | 302, 338, 376, 578 |
| CviJI | RGCY | 5 cut(s) | 25, 102, 307, 317, 606 |
| CviKI_1 | RGCY | 5 cut(s) | 25, 102, 307, 317, 606 |
| DdeI | CTNAG | 5 cut(s) | 255, 452, 600, 648, 720 |
| DinI | GGCGCC | 1 cut(s) | 431 |
| DpnI | GATC | 3 cut(s) | 191, 290, 660 |
| DpnII | GATC | 3 cut(s) | 189, 288, 658 |
| DraI | TTTAAA | 1 cut(s) | 625 |
| Eam1104I | CTCTTC | 1 cut(s) | 529 |
| EarI | CTCTTC | 1 cut(s) | 529 |
| Ecl136II | GAGCTC | 1 cut(s) | 307 |
| Eco130I | CCWWGG | 1 cut(s) | 375 |
| Eco24I | GRGCYC | 1 cut(s) | 309 |
| Eco31I | GGTCTC | 1 cut(s) | 37 |
| Eco32I | GATATC | 1 cut(s) | 372 |
| Eco53kI | GAGCTC | 1 cut(s) | 307 |
| Eco81I | CCTNAGG | 1 cut(s) | 720 |
| Eco91I | GGTNACC | 1 cut(s) | 503 |
| EcoICRI | GAGCTC | 1 cut(s) | 307 |
| EcoO65I | GGTNACC | 1 cut(s) | 503 |
| EcoRV | GATATC | 1 cut(s) | 372 |
| EcoT14I | CCWWGG | 1 cut(s) | 375 |
| EcoT38I | GRGCYC | 1 cut(s) | 309 |
| EgeI | GGCGCC | 1 cut(s) | 431 |
| EheI | GGCGCC | 1 cut(s) | 431 |
| ErhI | CCWWGG | 1 cut(s) | 375 |
| FaeI | CATG | 4 cut(s) | 305, 341, 379, 581 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 656, 688 |
| FatI | CATG | 4 cut(s) | 301, 337, 375, 577 |
| FokI | GGATG | 2 cut(s) | 332, 480 |
| FriOI | GRGCYC | 1 cut(s) | 309 |
| FspBI | CTAG | 1 cut(s) | 474 |
| GlaI | GCGC | 2 cut(s) | 431, 630 |
| HaeII | RGCGCY | 2 cut(s) | 433, 632 |
| HapII | CCGG | 1 cut(s) | 395 |
| HgaI | GACGC | 2 cut(s) | 577, 626 |
| HhaI | GCGC | 2 cut(s) | 432, 631 |
| Hin1I | GRCGYC | 2 cut(s) | 430, 588 |
| Hin1II | CATG | 4 cut(s) | 305, 341, 379, 581 |
| Hin6I | GCGC | 2 cut(s) | 430, 629 |
| HinP1I | GCGC | 2 cut(s) | 430, 629 |
| HinfI | GANTC | 3 cut(s) | 398, 644, 727 |
| HpaII | CCGG | 1 cut(s) | 395 |
| HphI | GGTGA | 1 cut(s) | 583 |
| Hpy166II | GTNNAC | 1 cut(s) | 542 |
| Hpy188I | TCNGA | 3 cut(s) | 79, 145, 649 |
| Hpy188III | TCNNGA | 3 cut(s) | 131, 302, 395 |
| Hpy8I | GTNNAC | 1 cut(s) | 542 |
| HpyAV | CCTTC | 3 cut(s) | 15, 238, 494 |
| HpyCH4III | ACNGT | 1 cut(s) | 446 |
| HpyCH4IV | ACGT | 2 cut(s) | 57, 544 |
| HpyCH4V | TGCA | 4 cut(s) | 66, 242, 281, 414 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 436, 626, 722 |
| HpyF3I | CTNAG | 5 cut(s) | 255, 452, 600, 648, 720 |
| HpySE526I | ACGT | 2 cut(s) | 57, 544 |
| Hsp92I | GRCGYC | 2 cut(s) | 430, 588 |
| Hsp92II | CATG | 4 cut(s) | 305, 341, 379, 581 |
| HspAI | GCGC | 2 cut(s) | 430, 629 |
| KasI | GGCGCC | 1 cut(s) | 429 |
| Kpn2I | TCCGGA | 1 cut(s) | 394 |
| Kzo9I | GATC | 3 cut(s) | 189, 288, 658 |
| LmnI | GCTCC | 2 cut(s) | 314, 721 |
| LpnPI | CCDG | 5 cut(s) | 31, 83, 267, 408, 558 |
| LweI | GCATC | 2 cut(s) | 187, 458 |
| MaeI | CTAG | 1 cut(s) | 474 |
| MaeII | ACGT | 2 cut(s) | 57, 544 |
| MaeIII | GTNAC | 2 cut(s) | 503, 589 |
| MalI | GATC | 3 cut(s) | 191, 290, 660 |
| MboI | GATC | 3 cut(s) | 189, 288, 658 |
| MboII | GAAGA | 3 cut(s) | 23, 367, 546 |
| MflI | RGATCY | 1 cut(s) | 658 |
| MhlI | GDGCHC | 2 cut(s) | 309, 654 |
| MluCI | AATT | 4 cut(s) | 173, 259, 364, 403 |
| Mly113I | GGCGCC | 1 cut(s) | 430 |
| MlyI | GAGTC | 1 cut(s) | 653 |
| MnlI | CCTC | 7 cut(s) | 113, 419, 530, 550, 554, 580, 642 |
| MroI | TCCGGA | 1 cut(s) | 394 |
| MseI | TTAA | 3 cut(s) | 159, 167, 624 |
| MslI | CAYNNNNRTG | 2 cut(s) | 350, 582 |
| MspI | CCGG | 1 cut(s) | 395 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 436, 626, 722 |
| NarI | GGCGCC | 1 cut(s) | 430 |
| NcoI | CCATGG | 1 cut(s) | 375 |
| NdeII | GATC | 3 cut(s) | 189, 288, 658 |
| NlaIII | CATG | 4 cut(s) | 305, 341, 379, 581 |
| NlaIV | GGNNCC | 3 cut(s) | 431, 530, 685 |
| NmuCI | GTSAC | 1 cut(s) | 589 |
| PagI | TCATGA | 1 cut(s) | 301 |
| PfeI | GAWTC | 2 cut(s) | 398, 727 |
| PleI | GAGTC | 1 cut(s) | 652 |
| PluTI | GGCGCC | 1 cut(s) | 433 |
| PpsI | GAGTC | 1 cut(s) | 652 |
| Psp124BI | GAGCTC | 1 cut(s) | 309 |
| Psp1406I | AACGTT | 1 cut(s) | 57 |
| PspEI | GGTNACC | 1 cut(s) | 503 |
| PspN4I | GGNNCC | 3 cut(s) | 431, 530, 685 |
| PsuI | RGATCY | 1 cut(s) | 658 |
| RseI | CAYNNNNRTG | 2 cut(s) | 350, 582 |
| SacI | GAGCTC | 1 cut(s) | 309 |
| SaqAI | TTAA | 3 cut(s) | 159, 167, 624 |
| Sau3AI | GATC | 3 cut(s) | 189, 288, 658 |
| SchI | GAGTC | 1 cut(s) | 653 |
| SduI | GDGCHC | 2 cut(s) | 309, 654 |
| SfaNI | GCATC | 2 cut(s) | 187, 458 |
| SfoI | GGCGCC | 1 cut(s) | 431 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 350, 582 |
| Sse9I | AATT | 4 cut(s) | 173, 259, 364, 403 |
| SsiI | CCGC | 2 cut(s) | 106, 508 |
| SspDI | GGCGCC | 1 cut(s) | 429 |
| SspMI | CTAG | 1 cut(s) | 474 |
| SstI | GAGCTC | 1 cut(s) | 309 |
| StyI | CCWWGG | 1 cut(s) | 375 |
| TaaI | ACNGT | 1 cut(s) | 446 |
| TaiI | ACGT | 2 cut(s) | 60, 547 |
| TaqI | TCGA | 2 cut(s) | 270, 368 |
| TasI | AATT | 4 cut(s) | 173, 259, 364, 403 |
| TfiI | GAWTC | 2 cut(s) | 398, 727 |
| Tru1I | TTAA | 3 cut(s) | 159, 167, 624 |
| Tru9I | TTAA | 3 cut(s) | 159, 167, 624 |
| TseFI | GTSAC | 1 cut(s) | 589 |
| Tsp45I | GTSAC | 1 cut(s) | 589 |
| TspDTI | ATGAA | 4 cut(s) | 17, 50, 290, 335 |
| TspGWI | ACGGA | 2 cut(s) | 301, 567 |
| XspI | CTAG | 1 cut(s) | 474 |