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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 474 |
| AccB1I | GGYRCC | 1 cut(s) | 587 |
| AccII | CGCG | 1 cut(s) | 414 |
| AccIII | TCCGGA | 1 cut(s) | 394 |
| AciI | CCGC | 1 cut(s) | 729 |
| AclWI | GGATC | 1 cut(s) | 366 |
| AcoI | YGGCCR | 1 cut(s) | 574 |
| AcsI | RAATTY | 1 cut(s) | 173 |
| AcyI | GRCGYC | 1 cut(s) | 588 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 425 |
| AgsI | TTSAA | 2 cut(s) | 121, 625 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 33, 65 |
| AluBI | AGCT | 4 cut(s) | 307, 317, 710, 761 |
| AluI | AGCT | 4 cut(s) | 307, 317, 710, 761 |
| Alw21I | GWGCWC | 2 cut(s) | 309, 712 |
| Alw26I | GTCTC | 2 cut(s) | 37, 241 |
| AlwI | GGATC | 1 cut(s) | 366 |
| Aor13HI | TCCGGA | 1 cut(s) | 394 |
| AoxI | GGCC | 2 cut(s) | 428, 574 |
| ApaI | GGGCCC | 1 cut(s) | 432 |
| ApoI | RAATTY | 1 cut(s) | 173 |
| AspLEI | GCGC | 3 cut(s) | 416, 590, 631 |
| AspS9I | GGNCC | 2 cut(s) | 428, 429 |
| AsuHPI | GGTGA | 1 cut(s) | 718 |
| AxyI | CCTNAGG | 1 cut(s) | 452 |
| BaeGI | GKGCMC | 2 cut(s) | 432, 697 |
| BalI | TGGCCA | 1 cut(s) | 576 |
| BanI | GGYRCC | 1 cut(s) | 587 |
| BanII | GRGCYC | 3 cut(s) | 309, 432, 712 |
| BauI | CACGAG | 1 cut(s) | 711 |
| BbsI | GAAGAC | 1 cut(s) | 18 |
| Bbv12I | GWGCWC | 2 cut(s) | 309, 712 |
| BccI | CCATC | 3 cut(s) | 87, 241, 615 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 86, 120, 260, 294 |
| BclI | TGATCA | 1 cut(s) | 685 |
| BcoDI | GTCTC | 2 cut(s) | 37, 241 |
| BfaI | CTAG | 3 cut(s) | 83, 474, 797 |
| BfoI | RGCGCY | 2 cut(s) | 591, 632 |
| BmgT120I | GGNCC | 2 cut(s) | 428, 429 |
| BmiI | GGNNCC | 4 cut(s) | 430, 431, 530, 589 |
| BpiI | GAAGAC | 1 cut(s) | 18 |
| Bsa29I | ATCGAT | 1 cut(s) | 270 |
| BsaHI | GRCGYC | 1 cut(s) | 588 |
| BsaI | GGTCTC | 1 cut(s) | 37 |
| BsaJI | CCNNGG | 1 cut(s) | 375 |
| BsaWI | WCCGGW | 1 cut(s) | 394 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 425 |
| Bse21I | CCTNAGG | 1 cut(s) | 452 |
| BseAI | TCCGGA | 1 cut(s) | 394 |
| BseCI | ATCGAT | 1 cut(s) | 270 |
| BseDI | CCNNGG | 1 cut(s) | 375 |
| BseGI | GGATG | 1 cut(s) | 345 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 425 |
| BseSI | GKGCMC | 2 cut(s) | 432, 697 |
| Bsh1236I | CGCG | 1 cut(s) | 414 |
| BshFI | GGCC | 2 cut(s) | 430, 576 |
| BshNI | GGYRCC | 1 cut(s) | 587 |
| BshVI | ATCGAT | 1 cut(s) | 270 |
| BsiHKAI | GWGCWC | 2 cut(s) | 309, 712 |
| BsiSI | CCGG | 1 cut(s) | 395 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 425 |
| BsmAI | GTCTC | 2 cut(s) | 37, 241 |
| BsmBI | CGTCTC | 1 cut(s) | 241 |
| BsnI | GGCC | 2 cut(s) | 430, 576 |
| Bso31I | GGTCTC | 1 cut(s) | 37 |
| Bsp120I | GGGCCC | 1 cut(s) | 428 |
| Bsp1286I | GDGCHC | 4 cut(s) | 309, 432, 697, 712 |
| Bsp13I | TCCGGA | 1 cut(s) | 394 |
| Bsp143I | GATC | 5 cut(s) | 189, 371, 685, 781, 793 |
| BspACI | CCGC | 1 cut(s) | 729 |
| BspANI | GGCC | 2 cut(s) | 430, 576 |
| BspDI | ATCGAT | 1 cut(s) | 270 |
| BspEI | TCCGGA | 1 cut(s) | 394 |
| BspFNI | CGCG | 1 cut(s) | 414 |
| BspHI | TCATGA | 1 cut(s) | 301 |
| BspLI | GGNNCC | 4 cut(s) | 430, 431, 530, 589 |
| BspPI | GGATC | 1 cut(s) | 366 |
| BspT107I | GGYRCC | 1 cut(s) | 587 |
| BspTNI | GGTCTC | 1 cut(s) | 37 |
| BssECI | CCNNGG | 1 cut(s) | 375 |
| BssMI | GATC | 5 cut(s) | 189, 371, 685, 781, 793 |
| BssNI | GRCGYC | 1 cut(s) | 588 |
| BssSI | CACGAG | 1 cut(s) | 711 |
| Bst2BI | CACGAG | 1 cut(s) | 711 |
| Bst6I | CTCTTC | 1 cut(s) | 529 |
| BstACI | GRCGYC | 1 cut(s) | 588 |
| BstDEI | CTNAG | 3 cut(s) | 255, 452, 600 |
| BstDSI | CCRYGG | 1 cut(s) | 375 |
| BstF5I | GGATG | 1 cut(s) | 345 |
| BstFNI | CGCG | 1 cut(s) | 414 |
| BstH2I | RGCGCY | 2 cut(s) | 591, 632 |
| BstHHI | GCGC | 3 cut(s) | 416, 590, 631 |
| BstKTI | GATC | 5 cut(s) | 192, 374, 688, 784, 796 |
| BstMAI | GTCTC | 2 cut(s) | 37, 241 |
| BstMBI | GATC | 5 cut(s) | 189, 371, 685, 781, 793 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 436, 626, 737, 758 |
| BstSLI | GKGCMC | 2 cut(s) | 432, 697 |
| BstUI | CGCG | 1 cut(s) | 414 |
| BstV2I | GAAGAC | 1 cut(s) | 18 |
| BstX2I | RGATCY | 1 cut(s) | 371 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 584 |
| BstYI | RGATCY | 1 cut(s) | 371 |
| Bsu15I | ATCGAT | 1 cut(s) | 270 |
| Bsu36I | CCTNAGG | 1 cut(s) | 452 |
| BsuRI | GGCC | 2 cut(s) | 430, 576 |
| BsuTUI | ATCGAT | 1 cut(s) | 270 |
| BtgI | CCRYGG | 1 cut(s) | 375 |
| BtgZI | GCGATG | 1 cut(s) | 215 |
| BtsCI | GGATG | 1 cut(s) | 345 |
| CciI | TCATGA | 1 cut(s) | 301 |
| CfoI | GCGC | 3 cut(s) | 416, 590, 631 |
| Cfr13I | GGNCC | 2 cut(s) | 428, 429 |
| ClaI | ATCGAT | 1 cut(s) | 270 |
| CseI | GACGC | 1 cut(s) | 626 |
| CviAII | CATG | 4 cut(s) | 70, 302, 338, 578 |
| CviJI | RGCY | 8 cut(s) | 102, 307, 317, 430, 576, 606, 710, 761 |
| CviKI_1 | RGCY | 8 cut(s) | 102, 307, 317, 430, 576, 606, 710, 761 |
| DdeI | CTNAG | 3 cut(s) | 255, 452, 600 |
| DinI | GGCGCC | 1 cut(s) | 589 |
| DpnI | GATC | 5 cut(s) | 191, 373, 687, 783, 795 |
| DpnII | GATC | 5 cut(s) | 189, 371, 685, 781, 793 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 474 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 474 |
| EaeI | YGGCCR | 1 cut(s) | 574 |
| Eam1104I | CTCTTC | 1 cut(s) | 529 |
| EarI | CTCTTC | 1 cut(s) | 529 |
| Ecl136II | GAGCTC | 2 cut(s) | 307, 710 |
| Eco24I | GRGCYC | 3 cut(s) | 309, 432, 712 |
| Eco31I | GGTCTC | 1 cut(s) | 37 |
| Eco53kI | GAGCTC | 2 cut(s) | 307, 710 |
| Eco81I | CCTNAGG | 1 cut(s) | 452 |
| EcoICRI | GAGCTC | 2 cut(s) | 307, 710 |
| EcoO109I | RGGNCCY | 2 cut(s) | 428, 429 |
| EcoRI | GAATTC | 1 cut(s) | 173 |
| EcoT38I | GRGCYC | 3 cut(s) | 309, 432, 712 |
| EgeI | GGCGCC | 1 cut(s) | 589 |
| EheI | GGCGCC | 1 cut(s) | 589 |
| Esp3I | CGTCTC | 1 cut(s) | 241 |
| FaeI | CATG | 4 cut(s) | 73, 305, 341, 581 |
| FatI | CATG | 4 cut(s) | 69, 301, 337, 577 |
| FbaI | TGATCA | 1 cut(s) | 685 |
| FokI | GGATG | 1 cut(s) | 332 |
| FriOI | GRGCYC | 3 cut(s) | 309, 432, 712 |
| FspBI | CTAG | 3 cut(s) | 83, 474, 797 |
| GlaI | GCGC | 3 cut(s) | 415, 589, 630 |
| HaeII | RGCGCY | 2 cut(s) | 591, 632 |
| HaeIII | GGCC | 2 cut(s) | 430, 576 |
| HapII | CCGG | 1 cut(s) | 395 |
| HgaI | GACGC | 1 cut(s) | 626 |
| HhaI | GCGC | 3 cut(s) | 416, 590, 631 |
| Hin1I | GRCGYC | 1 cut(s) | 588 |
| Hin1II | CATG | 4 cut(s) | 73, 305, 341, 581 |
| Hin6I | GCGC | 3 cut(s) | 414, 588, 629 |
| HinP1I | GCGC | 3 cut(s) | 414, 588, 629 |
| HinfI | GANTC | 4 cut(s) | 65, 267, 288, 398 |
| HpaII | CCGG | 1 cut(s) | 395 |
| HphI | GGTGA | 1 cut(s) | 718 |
| Hpy166II | GTNNAC | 1 cut(s) | 542 |
| Hpy188I | TCNGA | 1 cut(s) | 685 |
| Hpy188III | TCNNGA | 8 cut(s) | 77, 302, 369, 395, 669, 713, 785, 797 |
| Hpy8I | GTNNAC | 1 cut(s) | 542 |
| HpyAV | CCTTC | 3 cut(s) | 113, 238, 494 |
| HpyCH4IV | ACGT | 3 cut(s) | 57, 469, 544 |
| HpyCH4V | TGCA | 2 cut(s) | 242, 281 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 436, 626, 737, 758 |
| HpyF3I | CTNAG | 3 cut(s) | 255, 452, 600 |
| HpySE526I | ACGT | 3 cut(s) | 57, 469, 544 |
| Hsp92I | GRCGYC | 1 cut(s) | 588 |
| Hsp92II | CATG | 4 cut(s) | 73, 305, 341, 581 |
| HspAI | GCGC | 3 cut(s) | 414, 588, 629 |
| KasI | GGCGCC | 1 cut(s) | 587 |
| Kpn2I | TCCGGA | 1 cut(s) | 394 |
| Ksp22I | TGATCA | 1 cut(s) | 685 |
| Kzo9I | GATC | 5 cut(s) | 189, 371, 685, 781, 793 |
| LmnI | GCTCC | 1 cut(s) | 314 |
| LpnPI | CCDG | 3 cut(s) | 90, 408, 558 |
| MaeI | CTAG | 3 cut(s) | 83, 474, 797 |
| MaeII | ACGT | 3 cut(s) | 57, 469, 544 |
| MaeIII | GTNAC | 2 cut(s) | 62, 724 |
| MalI | GATC | 5 cut(s) | 191, 373, 687, 783, 795 |
| MboI | GATC | 5 cut(s) | 189, 371, 685, 781, 793 |
| MboII | GAAGA | 7 cut(s) | 23, 53, 367, 546, 728, 791, 800 |
| MflI | RGATCY | 1 cut(s) | 371 |
| MhlI | GDGCHC | 4 cut(s) | 309, 432, 697, 712 |
| MlsI | TGGCCA | 1 cut(s) | 576 |
| MluCI | AATT | 4 cut(s) | 173, 364, 403, 720 |
| MluNI | TGGCCA | 1 cut(s) | 576 |
| Mly113I | GGCGCC | 1 cut(s) | 588 |
| MlyI | GAGTC | 1 cut(s) | 59 |
| MnlI | CCTC | 5 cut(s) | 419, 530, 554, 580, 642 |
| Mox20I | TGGCCA | 1 cut(s) | 576 |
| MroI | TCCGGA | 1 cut(s) | 394 |
| MscI | TGGCCA | 1 cut(s) | 576 |
| MseI | TTAA | 3 cut(s) | 159, 167, 276 |
| MslI | CAYNNNNRTG | 3 cut(s) | 350, 582, 612 |
| Msp20I | TGGCCA | 1 cut(s) | 576 |
| MspI | CCGG | 1 cut(s) | 395 |
| MvnI | CGCG | 1 cut(s) | 414 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 436, 626, 737, 758 |
| NarI | GGCGCC | 1 cut(s) | 588 |
| NdeII | GATC | 5 cut(s) | 189, 371, 685, 781, 793 |
| NlaIII | CATG | 4 cut(s) | 73, 305, 341, 581 |
| NlaIV | GGNNCC | 4 cut(s) | 430, 431, 530, 589 |
| NmuCI | GTSAC | 2 cut(s) | 62, 724 |
| PagI | TCATGA | 1 cut(s) | 301 |
| PfeI | GAWTC | 3 cut(s) | 267, 288, 398 |
| PleI | GAGTC | 1 cut(s) | 59 |
| PluTI | GGCGCC | 1 cut(s) | 591 |
| PpsI | GAGTC | 1 cut(s) | 59 |
| Psp124BI | GAGCTC | 2 cut(s) | 309, 712 |
| PspN4I | GGNNCC | 4 cut(s) | 430, 431, 530, 589 |
| PspOMI | GGGCCC | 1 cut(s) | 428 |
| PspPI | GGNCC | 2 cut(s) | 428, 429 |
| PsuI | RGATCY | 1 cut(s) | 371 |
| RseI | CAYNNNNRTG | 3 cut(s) | 350, 582, 612 |
| SacI | GAGCTC | 2 cut(s) | 309, 712 |
| SaqAI | TTAA | 3 cut(s) | 159, 167, 276 |
| Sau3AI | GATC | 5 cut(s) | 189, 371, 685, 781, 793 |
| Sau96I | GGNCC | 2 cut(s) | 428, 429 |
| SchI | GAGTC | 1 cut(s) | 59 |
| SduI | GDGCHC | 4 cut(s) | 309, 432, 697, 712 |
| SfoI | GGCGCC | 1 cut(s) | 589 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 350, 582, 612 |
| Sse9I | AATT | 4 cut(s) | 173, 364, 403, 720 |
| SsiI | CCGC | 1 cut(s) | 729 |
| SspDI | GGCGCC | 1 cut(s) | 587 |
| SspMI | CTAG | 3 cut(s) | 83, 474, 797 |
| SstI | GAGCTC | 2 cut(s) | 309, 712 |
| TaiI | ACGT | 3 cut(s) | 60, 472, 547 |
| TaqI | TCGA | 6 cut(s) | 39, 143, 265, 270, 368, 670 |
| TasI | AATT | 4 cut(s) | 173, 364, 403, 720 |
| TfiI | GAWTC | 3 cut(s) | 267, 288, 398 |
| Tru1I | TTAA | 3 cut(s) | 159, 167, 276 |
| Tru9I | TTAA | 3 cut(s) | 159, 167, 276 |
| TseFI | GTSAC | 2 cut(s) | 62, 724 |
| Tsp45I | GTSAC | 2 cut(s) | 62, 724 |
| TspDTI | ATGAA | 3 cut(s) | 17, 290, 335 |
| TspGWI | ACGGA | 2 cut(s) | 364, 541 |
| XapI | RAATTY | 1 cut(s) | 173 |
| XbaI | TCTAGA | 1 cut(s) | 796 |
| XspI | CTAG | 3 cut(s) | 83, 474, 797 |