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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 399, 444 |
| Acc65I | GGTACC | 1 cut(s) | 474 |
| AccB1I | GGYRCC | 2 cut(s) | 474, 620 |
| AccBSI | CCGCTC | 1 cut(s) | 472 |
| AccI | GTMKAC | 1 cut(s) | 735 |
| AciI | CCGC | 3 cut(s) | 472, 520, 644 |
| AcuI | CTGAAG | 1 cut(s) | 852 |
| AcvI | CACGTG | 2 cut(s) | 563, 581 |
| AcyI | GRCGYC | 1 cut(s) | 190 |
| AdeI | CACNNNGTG | 3 cut(s) | 566, 659, 668 |
| AfaI | GTAC | 2 cut(s) | 476, 764 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 64, 282, 458, 459, 529, 582, 611 |
| AflIII | ACRYGT | 2 cut(s) | 560, 578 |
| AgsI | TTSAA | 5 cut(s) | 30, 96, 405, 682, 826 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 299 |
| AluBI | AGCT | 5 cut(s) | 247, 260, 629, 719, 830 |
| AluI | AGCT | 5 cut(s) | 247, 260, 629, 719, 830 |
| Alw21I | GWGCWC | 4 cut(s) | 655, 664, 673, 846 |
| Alw44I | GTGCAC | 4 cut(s) | 651, 660, 669, 842 |
| AoxI | GGCC | 1 cut(s) | 509 |
| ApaLI | GTGCAC | 4 cut(s) | 651, 660, 669, 842 |
| ApeKI | GCWGC | 1 cut(s) | 719 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 261 |
| Asp718I | GGTACC | 1 cut(s) | 474 |
| AspA2I | CCTAGG | 1 cut(s) | 632 |
| AspLEI | GCGC | 1 cut(s) | 465 |
| AspS9I | GGNCC | 2 cut(s) | 509, 742 |
| AvaII | GGWCC | 1 cut(s) | 742 |
| AvrII | CCTAGG | 1 cut(s) | 632 |
| AxyI | CCTNAGG | 1 cut(s) | 746 |
| BaeGI | GKGCMC | 4 cut(s) | 655, 664, 673, 846 |
| BanI | GGYRCC | 2 cut(s) | 474, 620 |
| BbrPI | CACGTG | 2 cut(s) | 563, 581 |
| Bbv12I | GWGCWC | 4 cut(s) | 655, 664, 673, 846 |
| BbvI | GCAGC | 1 cut(s) | 706 |
| BccI | CCATC | 1 cut(s) | 93 |
| BceAI | ACGGC | 1 cut(s) | 594 |
| BciVI | GTATCC | 2 cut(s) | 550, 611 |
| BfaI | CTAG | 4 cut(s) | 15, 606, 633, 716 |
| BfmI | CTRYAG | 1 cut(s) | 813 |
| BfuI | GTATCC | 2 cut(s) | 550, 611 |
| BglII | AGATCT | 1 cut(s) | 133 |
| BisI | GCNGC | 1 cut(s) | 720 |
| BlnI | CCTAGG | 1 cut(s) | 632 |
| BlsI | GCNGC | 1 cut(s) | 721 |
| Bme18I | GGWCC | 1 cut(s) | 742 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 299 |
| BmgT120I | GGNCC | 2 cut(s) | 509, 742 |
| BmiI | GGNNCC | 4 cut(s) | 476, 510, 622, 743 |
| BmrI | ACTGGG | 1 cut(s) | 538 |
| BmsI | GCATC | 4 cut(s) | 174, 691, 716, 841 |
| BmuI | ACTGGG | 1 cut(s) | 538 |
| BpuEI | CTTGAG | 1 cut(s) | 153 |
| BsaAI | YACGTR | 2 cut(s) | 563, 581 |
| BsaBI | GATNNNNATC | 1 cut(s) | 804 |
| BsaHI | GRCGYC | 1 cut(s) | 190 |
| BsaJI | CCNNGG | 2 cut(s) | 610, 632 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 209, 239, 577, 607 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 64, 282, 458, 459, 529, 582, 611 |
| Bse1I | ACTGG | 1 cut(s) | 533 |
| Bse21I | CCTNAGG | 1 cut(s) | 746 |
| Bse8I | GATNNNNATC | 1 cut(s) | 804 |
| BseDI | CCNNGG | 2 cut(s) | 610, 632 |
| BseGI | GGATG | 1 cut(s) | 856 |
| BseJI | GATNNNNATC | 1 cut(s) | 804 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 64, 282, 458, 459, 529, 582, 611 |
| BseMII | CTCAG | 3 cut(s) | 223, 353, 737 |
| BseNI | ACTGG | 1 cut(s) | 533 |
| BseSI | GKGCMC | 4 cut(s) | 655, 664, 673, 846 |
| BseXI | GCAGC | 1 cut(s) | 706 |
| BshFI | GGCC | 1 cut(s) | 511 |
| BshNI | GGYRCC | 2 cut(s) | 474, 620 |
| BsiHKAI | GWGCWC | 4 cut(s) | 655, 664, 673, 846 |
| BslFI | GGGAC | 3 cut(s) | 504, 513, 755 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 64, 282, 458, 459, 529, 582, 611 |
| BsmFI | GGGAC | 3 cut(s) | 504, 513, 755 |
| BsmI | GAATGC | 2 cut(s) | 241, 644 |
| BsnI | GGCC | 1 cut(s) | 511 |
| Bsp1286I | GDGCHC | 4 cut(s) | 655, 664, 673, 846 |
| Bsp143I | GATC | 1 cut(s) | 133 |
| BspACI | CCGC | 3 cut(s) | 472, 520, 644 |
| BspANI | GGCC | 1 cut(s) | 511 |
| BspCNI | CTCAG | 3 cut(s) | 222, 354, 738 |
| BspHI | TCATGA | 1 cut(s) | 430 |
| BspLI | GGNNCC | 4 cut(s) | 476, 510, 622, 743 |
| BspQI | GCTCTTC | 1 cut(s) | 267 |
| BspT107I | GGYRCC | 2 cut(s) | 474, 620 |
| BsrBI | CCGCTC | 1 cut(s) | 472 |
| BsrI | ACTGG | 1 cut(s) | 533 |
| BssECI | CCNNGG | 2 cut(s) | 610, 632 |
| BssMI | GATC | 1 cut(s) | 133 |
| BssNAI | GTATAC | 1 cut(s) | 736 |
| BssNI | GRCGYC | 1 cut(s) | 190 |
| BssT1I | CCWWGG | 1 cut(s) | 632 |
| Bst1107I | GTATAC | 1 cut(s) | 736 |
| Bst4CI | ACNGT | 2 cut(s) | 62, 273 |
| Bst6I | CTCTTC | 1 cut(s) | 267 |
| BstACI | GRCGYC | 1 cut(s) | 190 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 659, 668 |
| BstBAI | YACGTR | 2 cut(s) | 563, 581 |
| BstC8I | GCNNGC | 4 cut(s) | 165, 644, 706, 710 |
| BstDEI | CTNAG | 5 cut(s) | 209, 362, 420, 480, 746 |
| BstDSI | CCRYGG | 1 cut(s) | 610 |
| BstF5I | GGATG | 1 cut(s) | 856 |
| BstHHI | GCGC | 1 cut(s) | 465 |
| BstKTI | GATC | 1 cut(s) | 136 |
| BstMBI | GATC | 1 cut(s) | 133 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 469, 659, 668 |
| BstNSI | RCATGY | 3 cut(s) | 48, 167, 373 |
| BstSFI | CTRYAG | 1 cut(s) | 813 |
| BstSLI | GKGCMC | 4 cut(s) | 655, 664, 673, 846 |
| BstV1I | GCAGC | 1 cut(s) | 706 |
| BstX2I | RGATCY | 1 cut(s) | 133 |
| BstYI | RGATCY | 1 cut(s) | 133 |
| BstZ17I | GTATAC | 1 cut(s) | 736 |
| Bsu36I | CCTNAGG | 1 cut(s) | 746 |
| BsuI | GTATCC | 2 cut(s) | 550, 611 |
| BsuRI | GGCC | 1 cut(s) | 511 |
| BtgI | CCRYGG | 1 cut(s) | 610 |
| BtsCI | GGATG | 1 cut(s) | 856 |
| Cac8I | GCNNGC | 4 cut(s) | 165, 644, 706, 710 |
| CciI | TCATGA | 1 cut(s) | 430 |
| CfoI | GCGC | 1 cut(s) | 465 |
| Cfr13I | GGNCC | 2 cut(s) | 509, 742 |
| CseI | GACGC | 1 cut(s) | 198 |
| Csp6I | GTAC | 2 cut(s) | 475, 763 |
| CviAII | CATG | 7 cut(s) | 45, 164, 277, 370, 374, 431, 494 |
| CviJI | RGCY | 9 cut(s) | 247, 260, 353, 409, 511, 609, 629, 719, 830 |
| CviKI_1 | RGCY | 9 cut(s) | 247, 260, 353, 409, 511, 609, 629, 719, 830 |
| CviQI | GTAC | 2 cut(s) | 475, 763 |
| DdeI | CTNAG | 5 cut(s) | 209, 362, 420, 480, 746 |
| DpnI | GATC | 1 cut(s) | 135 |
| DpnII | GATC | 1 cut(s) | 133 |
| DraIII | CACNNNGTG | 3 cut(s) | 566, 659, 668 |
| DriI | GACNNNNNGTC | 1 cut(s) | 299 |
| Eam1104I | CTCTTC | 1 cut(s) | 267 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 299 |
| EarI | CTCTTC | 1 cut(s) | 267 |
| Eco130I | CCWWGG | 1 cut(s) | 632 |
| Eco47I | GGWCC | 1 cut(s) | 742 |
| Eco57I | CTGAAG | 1 cut(s) | 852 |
| Eco72I | CACGTG | 2 cut(s) | 563, 581 |
| Eco81I | CCTNAGG | 1 cut(s) | 746 |
| EcoO109I | RGGNCCY | 1 cut(s) | 742 |
| EcoT14I | CCWWGG | 1 cut(s) | 632 |
| EcoT22I | ATGCAT | 1 cut(s) | 375 |
| ErhI | CCWWGG | 1 cut(s) | 632 |
| FaeI | CATG | 7 cut(s) | 48, 167, 280, 373, 377, 434, 497 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 750, 782 |
| FaqI | GGGAC | 3 cut(s) | 504, 513, 755 |
| FatI | CATG | 7 cut(s) | 44, 163, 276, 369, 373, 430, 493 |
| FauI | CCCGC | 1 cut(s) | 651 |
| FauNDI | CATATG | 2 cut(s) | 195, 504 |
| FblI | GTMKAC | 1 cut(s) | 735 |
| Fnu4HI | GCNGC | 1 cut(s) | 720 |
| FokI | GGATG | 1 cut(s) | 863 |
| Fsp4HI | GCNGC | 1 cut(s) | 720 |
| FspBI | CTAG | 4 cut(s) | 15, 606, 633, 716 |
| GlaI | GCGC | 1 cut(s) | 464 |
| GluI | GCNGC | 1 cut(s) | 720 |
| HaeIII | GGCC | 1 cut(s) | 511 |
| HgaI | GACGC | 1 cut(s) | 198 |
| HhaI | GCGC | 1 cut(s) | 465 |
| Hin1I | GRCGYC | 1 cut(s) | 190 |
| Hin1II | CATG | 7 cut(s) | 48, 167, 280, 373, 377, 434, 497 |
| Hin6I | GCGC | 1 cut(s) | 463 |
| HinP1I | GCGC | 1 cut(s) | 463 |
| HinfI | GANTC | 2 cut(s) | 18, 38 |
| Hpy166II | GTNNAC | 7 cut(s) | 293, 653, 662, 671, 736, 763, 844 |
| Hpy188I | TCNGA | 1 cut(s) | 212 |
| Hpy188III | TCNNGA | 4 cut(s) | 118, 181, 232, 431 |
| Hpy8I | GTNNAC | 7 cut(s) | 293, 653, 662, 671, 736, 763, 844 |
| Hpy99I | CGWCG | 1 cut(s) | 192 |
| HpyAV | CCTTC | 2 cut(s) | 349, 527 |
| HpyCH4III | ACNGT | 2 cut(s) | 62, 273 |
| HpyCH4IV | ACGT | 4 cut(s) | 562, 580, 649, 667 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 469, 659, 668 |
| HpyF3I | CTNAG | 5 cut(s) | 209, 362, 420, 480, 746 |
| HpySE526I | ACGT | 4 cut(s) | 562, 580, 649, 667 |
| Hsp92I | GRCGYC | 1 cut(s) | 190 |
| Hsp92II | CATG | 7 cut(s) | 48, 167, 280, 373, 377, 434, 497 |
| HspAI | GCGC | 1 cut(s) | 463 |
| KpnI | GGTACC | 1 cut(s) | 478 |
| Kzo9I | GATC | 1 cut(s) | 133 |
| LguI | GCTCTTC | 1 cut(s) | 267 |
| LmnI | GCTCC | 3 cut(s) | 469, 634, 751 |
| LpnPI | CCDG | 6 cut(s) | 131, 144, 514, 715, 724, 758 |
| Lsp1109I | GCAGC | 1 cut(s) | 706 |
| LweI | GCATC | 4 cut(s) | 174, 691, 716, 841 |
| MaeI | CTAG | 4 cut(s) | 15, 606, 633, 716 |
| MaeII | ACGT | 4 cut(s) | 562, 580, 649, 667 |
| MaeIII | GTNAC | 3 cut(s) | 67, 301, 415 |
| MalI | GATC | 1 cut(s) | 135 |
| MbiI | CCGCTC | 1 cut(s) | 472 |
| MboI | GATC | 1 cut(s) | 133 |
| MboII | GAAGA | 8 cut(s) | 254, 785, 788, 791, 794, 797, 800, 845 |
| MflI | RGATCY | 1 cut(s) | 133 |
| MhlI | GDGCHC | 4 cut(s) | 655, 664, 673, 846 |
| MluCI | AATT | 5 cut(s) | 318, 394, 400, 439, 677 |
| MlyI | GAGTC | 2 cut(s) | 12, 32 |
| MnlI | CCTC | 9 cut(s) | 276, 427, 452, 490, 581, 680, 684, 741, 811 |
| Mph1103I | ATGCAT | 1 cut(s) | 375 |
| MroXI | GAANNNNTTC | 1 cut(s) | 261 |
| MslI | CAYNNNNRTG | 3 cut(s) | 386, 699, 849 |
| Mva1269I | GAATGC | 2 cut(s) | 241, 644 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 469, 659, 668 |
| NdeI | CATATG | 2 cut(s) | 195, 504 |
| NdeII | GATC | 1 cut(s) | 133 |
| NlaIII | CATG | 7 cut(s) | 48, 167, 280, 373, 377, 434, 497 |
| NlaIV | GGNNCC | 4 cut(s) | 476, 510, 622, 743 |
| NmuCI | GTSAC | 1 cut(s) | 301 |
| NsiI | ATGCAT | 1 cut(s) | 375 |
| NspI | RCATGY | 3 cut(s) | 48, 167, 373 |
| PaeI | GCATGC | 1 cut(s) | 167 |
| PagI | TCATGA | 1 cut(s) | 430 |
| PciSI | GCTCTTC | 1 cut(s) | 267 |
| PctI | GAATGC | 2 cut(s) | 241, 644 |
| PdmI | GAANNNNTTC | 1 cut(s) | 261 |
| PkrI | GCNGC | 1 cut(s) | 721 |
| PleI | GAGTC | 2 cut(s) | 12, 32 |
| PmaCI | CACGTG | 2 cut(s) | 563, 581 |
| PmlI | CACGTG | 2 cut(s) | 563, 581 |
| PpsI | GAGTC | 2 cut(s) | 12, 32 |
| Ppu21I | YACGTR | 2 cut(s) | 563, 581 |
| PpuMI | RGGWCCY | 1 cut(s) | 742 |
| PsiI | TTATAA | 2 cut(s) | 399, 444 |
| Psp5II | RGGWCCY | 1 cut(s) | 742 |
| PspCI | CACGTG | 2 cut(s) | 563, 581 |
| PspN4I | GGNNCC | 4 cut(s) | 476, 510, 622, 743 |
| PspPI | GGNCC | 2 cut(s) | 509, 742 |
| PspPPI | RGGWCCY | 1 cut(s) | 742 |
| PsuI | RGATCY | 1 cut(s) | 133 |
| RsaI | GTAC | 2 cut(s) | 476, 764 |
| RsaNI | GTAC | 2 cut(s) | 475, 763 |
| RseI | CAYNNNNRTG | 3 cut(s) | 386, 699, 849 |
| SapI | GCTCTTC | 1 cut(s) | 267 |
| SatI | GCNGC | 1 cut(s) | 720 |
| Sau3AI | GATC | 1 cut(s) | 133 |
| Sau96I | GGNCC | 2 cut(s) | 509, 742 |
| SchI | GAGTC | 2 cut(s) | 12, 32 |
| SduI | GDGCHC | 4 cut(s) | 655, 664, 673, 846 |
| SfaNI | GCATC | 4 cut(s) | 174, 691, 716, 841 |
| SfcI | CTRYAG | 1 cut(s) | 813 |
| SinI | GGWCC | 1 cut(s) | 742 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 386, 699, 849 |
| SmlI | CTYRAG | 1 cut(s) | 168 |
| SmoI | CTYRAG | 1 cut(s) | 168 |
| SphI | GCATGC | 1 cut(s) | 167 |
| Sse9I | AATT | 5 cut(s) | 318, 394, 400, 439, 677 |
| SsiI | CCGC | 3 cut(s) | 472, 520, 644 |
| SspI | AATATT | 1 cut(s) | 105 |
| SspMI | CTAG | 4 cut(s) | 15, 606, 633, 716 |
| StyI | CCWWGG | 1 cut(s) | 632 |
| TaaI | ACNGT | 2 cut(s) | 62, 273 |
| TaiI | ACGT | 4 cut(s) | 565, 583, 652, 670 |
| TaqI | TCGA | 1 cut(s) | 5 |
| TasI | AATT | 5 cut(s) | 318, 394, 400, 439, 677 |
| TseFI | GTSAC | 1 cut(s) | 301 |
| TseI | GCWGC | 1 cut(s) | 719 |
| Tsp45I | GTSAC | 1 cut(s) | 301 |
| TspDTI | ATGAA | 3 cut(s) | 24, 419, 852 |
| VneI | GTGCAC | 4 cut(s) | 651, 660, 669, 842 |
| VpaK11BI | GGWCC | 1 cut(s) | 742 |
| XceI | RCATGY | 3 cut(s) | 48, 167, 373 |
| XmaJI | CCTAGG | 1 cut(s) | 632 |
| XmiI | GTMKAC | 1 cut(s) | 735 |
| XmnI | GAANNNNTTC | 1 cut(s) | 261 |
| XspI | CTAG | 4 cut(s) | 15, 606, 633, 716 |
| Zsp2I | ATGCAT | 1 cut(s) | 375 |