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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 153 |
| AciI | CCGC | 1 cut(s) | 199 |
| AclWI | GGATC | 1 cut(s) | 389 |
| AcsI | RAATTY | 1 cut(s) | 266 |
| AcyI | GRCGYC | 1 cut(s) | 150 |
| AfeI | AGCGCT | 1 cut(s) | 421 |
| AgsI | TTSAA | 1 cut(s) | 214 |
| AjiI | CACGTC | 1 cut(s) | 136 |
| AjnI | CCWGG | 1 cut(s) | 105 |
| AleI | CACNNNNGTG | 1 cut(s) | 290 |
| AluBI | AGCT | 3 cut(s) | 29, 48, 400 |
| AluI | AGCT | 3 cut(s) | 29, 48, 400 |
| Alw21I | GWGCWC | 1 cut(s) | 402 |
| Alw26I | GTCTC | 1 cut(s) | 334 |
| AlwI | GGATC | 1 cut(s) | 389 |
| Aor51HI | AGCGCT | 1 cut(s) | 421 |
| ApoI | RAATTY | 1 cut(s) | 266 |
| AspLEI | GCGC | 1 cut(s) | 422 |
| BanII | GRGCYC | 1 cut(s) | 402 |
| BauI | CACGAG | 1 cut(s) | 467 |
| BbsI | GAAGAC | 1 cut(s) | 314 |
| Bbv12I | GWGCWC | 1 cut(s) | 402 |
| BccI | CCATC | 3 cut(s) | 92, 180, 334 |
| BceAI | ACGGC | 1 cut(s) | 108 |
| BciT130I | CCWGG | 1 cut(s) | 107 |
| BciVI | GTATCC | 1 cut(s) | 103 |
| BcoDI | GTCTC | 1 cut(s) | 334 |
| BfaI | CTAG | 2 cut(s) | 45, 176 |
| BfoI | RGCGCY | 1 cut(s) | 423 |
| BfuI | GTATCC | 1 cut(s) | 103 |
| Bme1390I | CCNGG | 1 cut(s) | 107 |
| BmgBI | CACGTC | 1 cut(s) | 136 |
| BmiI | GGNNCC | 1 cut(s) | 409 |
| BmrFI | CCNGG | 1 cut(s) | 107 |
| BmsI | GCATC | 1 cut(s) | 94 |
| BpiI | GAAGAC | 1 cut(s) | 314 |
| BpuEI | CTTGAG | 1 cut(s) | 104 |
| BsaHI | GRCGYC | 1 cut(s) | 150 |
| Bse1I | ACTGG | 1 cut(s) | 24 |
| Bse3DI | GCAATG | 1 cut(s) | 190 |
| BseBI | CCWGG | 1 cut(s) | 107 |
| BseGI | GGATG | 1 cut(s) | 438 |
| BseMI | GCAATG | 1 cut(s) | 190 |
| BseNI | ACTGG | 1 cut(s) | 24 |
| BsiHKAI | GWGCWC | 1 cut(s) | 402 |
| BslFI | GGGAC | 1 cut(s) | 487 |
| BsmAI | GTCTC | 1 cut(s) | 334 |
| BsmBI | CGTCTC | 1 cut(s) | 334 |
| BsmFI | GGGAC | 1 cut(s) | 487 |
| Bsp1286I | GDGCHC | 1 cut(s) | 402 |
| Bsp143I | GATC | 2 cut(s) | 282, 381 |
| BspACI | CCGC | 1 cut(s) | 199 |
| BspHI | TCATGA | 1 cut(s) | 394 |
| BspLI | GGNNCC | 1 cut(s) | 409 |
| BspPI | GGATC | 1 cut(s) | 389 |
| BsrDI | GCAATG | 1 cut(s) | 190 |
| BsrI | ACTGG | 1 cut(s) | 24 |
| BssMI | GATC | 2 cut(s) | 282, 381 |
| BssNI | GRCGYC | 1 cut(s) | 150 |
| BssSI | CACGAG | 1 cut(s) | 467 |
| Bst2BI | CACGAG | 1 cut(s) | 467 |
| Bst2UI | CCWGG | 1 cut(s) | 107 |
| BstACI | GRCGYC | 1 cut(s) | 150 |
| BstDEI | CTNAG | 2 cut(s) | 25, 348 |
| BstF5I | GGATG | 1 cut(s) | 438 |
| BstH2I | RGCGCY | 1 cut(s) | 423 |
| BstHHI | GCGC | 1 cut(s) | 422 |
| BstKTI | GATC | 2 cut(s) | 285, 384 |
| BstMAI | GTCTC | 1 cut(s) | 334 |
| BstMBI | GATC | 2 cut(s) | 282, 381 |
| BstNI | CCWGG | 1 cut(s) | 107 |
| BstSCI | CCNGG | 1 cut(s) | 105 |
| BstV2I | GAAGAC | 1 cut(s) | 314 |
| BsuI | GTATCC | 1 cut(s) | 103 |
| BtrI | CACGTC | 1 cut(s) | 136 |
| BtsCI | GGATG | 1 cut(s) | 438 |
| CciI | TCATGA | 1 cut(s) | 394 |
| CfoI | GCGC | 1 cut(s) | 422 |
| CviAII | CATG | 3 cut(s) | 395, 412, 431 |
| CviJI | RGCY | 6 cut(s) | 29, 48, 95, 124, 400, 410 |
| CviKI_1 | RGCY | 6 cut(s) | 29, 48, 95, 124, 400, 410 |
| DdeI | CTNAG | 2 cut(s) | 25, 348 |
| DpnI | GATC | 2 cut(s) | 284, 383 |
| DpnII | GATC | 2 cut(s) | 282, 381 |
| Ecl136II | GAGCTC | 1 cut(s) | 400 |
| Eco24I | GRGCYC | 1 cut(s) | 402 |
| Eco32I | GATATC | 1 cut(s) | 76 |
| Eco47III | AGCGCT | 1 cut(s) | 421 |
| Eco53kI | GAGCTC | 1 cut(s) | 400 |
| EcoICRI | GAGCTC | 1 cut(s) | 400 |
| EcoRI | GAATTC | 1 cut(s) | 266 |
| EcoRII | CCWGG | 1 cut(s) | 105 |
| EcoRV | GATATC | 1 cut(s) | 76 |
| EcoT38I | GRGCYC | 1 cut(s) | 402 |
| Esp3I | CGTCTC | 1 cut(s) | 334 |
| FaeI | CATG | 3 cut(s) | 398, 415, 434 |
| FaiI | YATR | 9 cut(s) | 55, 273, 289, 291, 396, 413, 432, 483, 490 |
| FaqI | GGGAC | 1 cut(s) | 487 |
| FatI | CATG | 3 cut(s) | 394, 411, 430 |
| FauNDI | CATATG | 1 cut(s) | 289 |
| FokI | GGATG | 1 cut(s) | 425 |
| FriOI | GRGCYC | 1 cut(s) | 402 |
| FspBI | CTAG | 2 cut(s) | 45, 176 |
| GlaI | GCGC | 1 cut(s) | 421 |
| HaeII | RGCGCY | 1 cut(s) | 423 |
| HhaI | GCGC | 1 cut(s) | 422 |
| Hin1I | GRCGYC | 1 cut(s) | 150 |
| Hin1II | CATG | 3 cut(s) | 398, 415, 434 |
| Hin6I | GCGC | 1 cut(s) | 420 |
| HinP1I | GCGC | 1 cut(s) | 420 |
| HinfI | GANTC | 5 cut(s) | 102, 115, 158, 310, 465 |
| Hpy188I | TCNGA | 1 cut(s) | 238 |
| Hpy188III | TCNNGA | 4 cut(s) | 71, 176, 224, 395 |
| HpyCH4IV | ACGT | 2 cut(s) | 135, 150 |
| HpyCH4V | TGCA | 1 cut(s) | 249 |
| HpyF3I | CTNAG | 2 cut(s) | 25, 348 |
| HpySE526I | ACGT | 2 cut(s) | 135, 150 |
| Hsp92I | GRCGYC | 1 cut(s) | 150 |
| Hsp92II | CATG | 3 cut(s) | 398, 415, 434 |
| HspAI | GCGC | 1 cut(s) | 420 |
| Kzo9I | GATC | 2 cut(s) | 282, 381 |
| LmnI | GCTCC | 2 cut(s) | 34, 407 |
| LpnPI | CCDG | 5 cut(s) | 5, 23, 92, 95, 119 |
| LweI | GCATC | 1 cut(s) | 94 |
| MaeI | CTAG | 2 cut(s) | 45, 176 |
| MaeII | ACGT | 2 cut(s) | 135, 150 |
| MaeIII | GTNAC | 3 cut(s) | 5, 155, 367 |
| MalI | GATC | 2 cut(s) | 284, 383 |
| MboI | GATC | 2 cut(s) | 282, 381 |
| MboII | GAAGA | 3 cut(s) | 313, 319, 460 |
| MhlI | GDGCHC | 1 cut(s) | 402 |
| MluCI | AATT | 2 cut(s) | 266, 457 |
| MlyI | GAGTC | 3 cut(s) | 152, 304, 459 |
| MnlI | CCTC | 2 cut(s) | 206, 335 |
| MseI | TTAA | 2 cut(s) | 252, 260 |
| MslI | CAYNNNNRTG | 2 cut(s) | 290, 443 |
| MspR9I | CCNGG | 1 cut(s) | 107 |
| MvaI | CCWGG | 1 cut(s) | 107 |
| NdeI | CATATG | 1 cut(s) | 289 |
| NdeII | GATC | 2 cut(s) | 282, 381 |
| NlaIII | CATG | 3 cut(s) | 398, 415, 434 |
| NlaIV | GGNNCC | 1 cut(s) | 409 |
| NmuCI | GTSAC | 1 cut(s) | 155 |
| OliI | CACNNNNGTG | 1 cut(s) | 290 |
| PagI | TCATGA | 1 cut(s) | 394 |
| PfeI | GAWTC | 2 cut(s) | 102, 115 |
| PfoI | TCCNGGA | 1 cut(s) | 105 |
| PleI | GAGTC | 3 cut(s) | 152, 304, 459 |
| PpsI | GAGTC | 3 cut(s) | 152, 304, 459 |
| Psp124BI | GAGCTC | 1 cut(s) | 402 |
| Psp6I | CCWGG | 1 cut(s) | 105 |
| PspGI | CCWGG | 1 cut(s) | 105 |
| PspN4I | GGNNCC | 1 cut(s) | 409 |
| RseI | CAYNNNNRTG | 2 cut(s) | 290, 443 |
| SacI | GAGCTC | 1 cut(s) | 402 |
| SaqAI | TTAA | 2 cut(s) | 252, 260 |
| Sau3AI | GATC | 2 cut(s) | 282, 381 |
| SchI | GAGTC | 3 cut(s) | 152, 304, 459 |
| ScrFI | CCNGG | 1 cut(s) | 107 |
| SduI | GDGCHC | 1 cut(s) | 402 |
| SetI | ASST | 8 cut(s) | 12, 31, 50, 138, 146, 153, 392, 402 |
| SfaNI | GCATC | 1 cut(s) | 94 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 290, 443 |
| SmlI | CTYRAG | 1 cut(s) | 119 |
| SmoI | CTYRAG | 1 cut(s) | 119 |
| Sse9I | AATT | 2 cut(s) | 266, 457 |
| SsiI | CCGC | 1 cut(s) | 199 |
| SspMI | CTAG | 2 cut(s) | 45, 176 |
| SstI | GAGCTC | 1 cut(s) | 402 |
| StyD4I | CCNGG | 1 cut(s) | 105 |
| TaiI | ACGT | 2 cut(s) | 138, 153 |
| TasI | AATT | 2 cut(s) | 266, 457 |
| TfiI | GAWTC | 2 cut(s) | 102, 115 |
| Tru1I | TTAA | 2 cut(s) | 252, 260 |
| Tru9I | TTAA | 2 cut(s) | 252, 260 |
| TseFI | GTSAC | 1 cut(s) | 155 |
| Tsp45I | GTSAC | 1 cut(s) | 155 |
| TspDTI | ATGAA | 3 cut(s) | 383, 428, 477 |
| TspGWI | ACGGA | 1 cut(s) | 394 |
| XapI | RAATTY | 1 cut(s) | 266 |
| XbaI | TCTAGA | 1 cut(s) | 175 |
| XspI | CTAG | 2 cut(s) | 45, 176 |
| ZraI | GACGTC | 1 cut(s) | 151 |