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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 819, 864 |
| AarI | CACCTGC | 1 cut(s) | 303 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 927 |
| Acc36I | ACCTGC | 2 cut(s) | 106, 303 |
| AccB1I | GGYRCC | 1 cut(s) | 1045 |
| AccII | CGCG | 2 cut(s) | 45, 195 |
| AciI | CCGC | 6 cut(s) | 32, 43, 166, 193, 237, 1069 |
| AclWI | GGATC | 3 cut(s) | 332, 447, 752 |
| AcuI | CTGAAG | 1 cut(s) | 747 |
| AcvI | CACGTG | 1 cut(s) | 983 |
| AdeI | CACNNNGTG | 1 cut(s) | 986 |
| AfaI | GTAC | 1 cut(s) | 724 |
| AfeI | AGCGCT | 2 cut(s) | 492, 503 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 370, 949, 1002, 1036, 1059 |
| AflIII | ACRYGT | 2 cut(s) | 980, 998 |
| AgsI | TTSAA | 6 cut(s) | 402, 541, 548, 577, 769, 825 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 644 |
| AhlI | ACTAGT | 1 cut(s) | 805 |
| AjnI | CCWGG | 3 cut(s) | 60, 320, 948 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 489, 521 |
| AluBI | AGCT | 5 cut(s) | 71, 216, 481, 763, 785 |
| AluI | AGCT | 5 cut(s) | 71, 216, 481, 763, 785 |
| Alw21I | GWGCWC | 2 cut(s) | 30, 1080 |
| Alw44I | GTGCAC | 1 cut(s) | 26 |
| AlwI | GGATC | 3 cut(s) | 332, 447, 752 |
| Aor51HI | AGCGCT | 2 cut(s) | 492, 503 |
| ApaLI | GTGCAC | 1 cut(s) | 26 |
| ApeKI | GCWGC | 7 cut(s) | 4, 11, 19, 38, 89, 101, 239 |
| AspA2I | CCTAGG | 2 cut(s) | 899, 1057 |
| AspLEI | GCGC | 6 cut(s) | 47, 126, 197, 261, 493, 504 |
| AspS9I | GGNCC | 1 cut(s) | 929 |
| AsuC2I | CCSGG | 1 cut(s) | 437 |
| AvaII | GGWCC | 1 cut(s) | 929 |
| AvrII | CCTAGG | 2 cut(s) | 899, 1057 |
| BaeGI | GKGCMC | 1 cut(s) | 30 |
| BanI | GGYRCC | 1 cut(s) | 1045 |
| BauI | CACGAG | 1 cut(s) | 268 |
| BbrPI | CACGTG | 1 cut(s) | 983 |
| BbsI | GAAGAC | 1 cut(s) | 677 |
| Bbv12I | GWGCWC | 2 cut(s) | 30, 1080 |
| BbvI | GCAGC | 7 cut(s) | 6, 16, 23, 25, 76, 113, 226 |
| BccI | CCATC | 2 cut(s) | 141, 399 |
| BceAI | ACGGC | 2 cut(s) | 126, 1014 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 291, 325 |
| BciT130I | CCWGG | 3 cut(s) | 62, 322, 950 |
| BciVI | GTATCC | 2 cut(s) | 970, 1031 |
| BcnI | CCSGG | 1 cut(s) | 437 |
| BcuI | ACTAGT | 1 cut(s) | 805 |
| BfaI | CTAG | 5 cut(s) | 494, 806, 900, 1026, 1058 |
| BfmI | CTRYAG | 4 cut(s) | 9, 99, 171, 780 |
| BfoI | RGCGCY | 2 cut(s) | 494, 505 |
| BfuAI | ACCTGC | 2 cut(s) | 106, 303 |
| BfuI | GTATCC | 2 cut(s) | 970, 1031 |
| BisI | GCNGC | 7 cut(s) | 5, 12, 20, 39, 90, 102, 240 |
| BlnI | CCTAGG | 2 cut(s) | 899, 1057 |
| BlsI | GCNGC | 7 cut(s) | 6, 13, 21, 40, 91, 103, 241 |
| Bme1390I | CCNGG | 4 cut(s) | 62, 322, 437, 950 |
| Bme18I | GGWCC | 1 cut(s) | 929 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 644 |
| BmgT120I | GGNCC | 1 cut(s) | 929 |
| BmiI | GGNNCC | 2 cut(s) | 930, 1047 |
| BmrFI | CCNGG | 4 cut(s) | 62, 322, 437, 950 |
| BmsI | GCATC | 2 cut(s) | 56, 460 |
| BpiI | GAAGAC | 1 cut(s) | 677 |
| Bpu10I | CCTNAGC | 1 cut(s) | 251 |
| BpuEI | CTTGAG | 1 cut(s) | 215 |
| BpuMI | CCSGG | 1 cut(s) | 437 |
| BsaAI | YACGTR | 1 cut(s) | 983 |
| BsaJI | CCNNGG | 3 cut(s) | 320, 899, 1057 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 443, 473, 997, 1027, 1038, 1068 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 370, 949, 1002, 1036, 1059 |
| Bse1I | ACTGG | 1 cut(s) | 742 |
| BseBI | CCWGG | 3 cut(s) | 62, 322, 950 |
| BseDI | CCNNGG | 3 cut(s) | 320, 899, 1057 |
| BseGI | GGATG | 3 cut(s) | 133, 312, 475 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 370, 949, 1002, 1036, 1059 |
| BseMII | CTCAG | 2 cut(s) | 242, 777 |
| BseNI | ACTGG | 1 cut(s) | 742 |
| BseRI | GAGGAG | 2 cut(s) | 63, 1070 |
| BseSI | GKGCMC | 1 cut(s) | 30 |
| BseXI | GCAGC | 7 cut(s) | 6, 16, 23, 25, 76, 113, 226 |
| BseYI | CCCAGC | 1 cut(s) | 212 |
| BsgI | GTGCAG | 3 cut(s) | 75, 275, 545 |
| Bsh1236I | CGCG | 2 cut(s) | 45, 195 |
| BshNI | GGYRCC | 1 cut(s) | 1045 |
| BsiHKAI | GWGCWC | 2 cut(s) | 30, 1080 |
| BsiSI | CCGG | 1 cut(s) | 437 |
| BslFI | GGGAC | 3 cut(s) | 260, 924, 933 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 370, 949, 1002, 1036, 1059 |
| BsmFI | GGGAC | 3 cut(s) | 260, 924, 933 |
| BsmI | GAATGC | 1 cut(s) | 1069 |
| Bsp1286I | GDGCHC | 2 cut(s) | 30, 1080 |
| Bsp143I | GATC | 4 cut(s) | 324, 439, 462, 744 |
| BspACI | CCGC | 6 cut(s) | 32, 43, 166, 193, 237, 1069 |
| BspCNI | CTCAG | 2 cut(s) | 243, 778 |
| BspFNI | CGCG | 2 cut(s) | 45, 195 |
| BspHI | TCATGA | 1 cut(s) | 850 |
| BspLI | GGNNCC | 2 cut(s) | 930, 1047 |
| BspMAI | CTGCAG | 3 cut(s) | 13, 103, 175 |
| BspMI | ACCTGC | 2 cut(s) | 106, 303 |
| BspPI | GGATC | 3 cut(s) | 332, 447, 752 |
| BspQI | GCTCTTC | 1 cut(s) | 492 |
| BspT107I | GGYRCC | 1 cut(s) | 1045 |
| BsrI | ACTGG | 1 cut(s) | 742 |
| BssECI | CCNNGG | 3 cut(s) | 320, 899, 1057 |
| BssMI | GATC | 4 cut(s) | 324, 439, 462, 744 |
| BssSI | CACGAG | 1 cut(s) | 268 |
| BssT1I | CCWWGG | 2 cut(s) | 899, 1057 |
| Bst2BI | CACGAG | 1 cut(s) | 268 |
| Bst2UI | CCWGG | 3 cut(s) | 62, 322, 950 |
| Bst4CI | ACNGT | 2 cut(s) | 368, 722 |
| Bst6I | CTCTTC | 1 cut(s) | 492 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 98 |
| BstBAI | YACGTR | 1 cut(s) | 983 |
| BstC8I | GCNNGC | 9 cut(s) | 9, 36, 43, 193, 218, 244, 257, 300, 1069 |
| BstDEI | CTNAG | 3 cut(s) | 251, 786, 840 |
| BstF5I | GGATG | 3 cut(s) | 133, 312, 475 |
| BstFNI | CGCG | 2 cut(s) | 45, 195 |
| BstH2I | RGCGCY | 2 cut(s) | 494, 505 |
| BstHHI | GCGC | 6 cut(s) | 47, 126, 197, 261, 493, 504 |
| BstKTI | GATC | 4 cut(s) | 327, 442, 465, 747 |
| BstMBI | GATC | 4 cut(s) | 324, 439, 462, 744 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 25, 44, 98, 110, 203, 217, 252, 279, 499 |
| BstNI | CCWGG | 3 cut(s) | 62, 322, 950 |
| BstNSI | RCATGY | 2 cut(s) | 259, 1002 |
| BstSCI | CCNGG | 4 cut(s) | 60, 320, 435, 948 |
| BstSFI | CTRYAG | 4 cut(s) | 9, 99, 171, 780 |
| BstSLI | GKGCMC | 1 cut(s) | 30 |
| BstUI | CGCG | 2 cut(s) | 45, 195 |
| BstV1I | GCAGC | 7 cut(s) | 6, 16, 23, 25, 76, 113, 226 |
| BstV2I | GAAGAC | 1 cut(s) | 677 |
| BstX2I | RGATCY | 1 cut(s) | 439 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 61 |
| BstYI | RGATCY | 1 cut(s) | 439 |
| BsuI | GTATCC | 2 cut(s) | 970, 1031 |
| BtsCI | GGATG | 3 cut(s) | 133, 312, 475 |
| BveI | ACCTGC | 2 cut(s) | 106, 303 |
| Cac8I | GCNNGC | 9 cut(s) | 9, 36, 43, 193, 218, 244, 257, 300, 1069 |
| CciI | TCATGA | 1 cut(s) | 850 |
| CfoI | GCGC | 6 cut(s) | 47, 126, 197, 261, 493, 504 |
| Cfr13I | GGNCC | 1 cut(s) | 929 |
| CseI | GACGC | 1 cut(s) | 262 |
| Csp6I | GTAC | 1 cut(s) | 723 |
| CviAII | CATG | 8 cut(s) | 256, 303, 337, 622, 794, 851, 914, 999 |
| CviQI | GTAC | 1 cut(s) | 723 |
| DdeI | CTNAG | 3 cut(s) | 251, 786, 840 |
| DpnI | GATC | 4 cut(s) | 326, 441, 464, 746 |
| DpnII | GATC | 4 cut(s) | 324, 439, 462, 744 |
| DraIII | CACNNNGTG | 1 cut(s) | 986 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 927 |
| DriI | GACNNNNNGTC | 1 cut(s) | 644 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 927 |
| Eam1104I | CTCTTC | 1 cut(s) | 492 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 644 |
| EarI | CTCTTC | 1 cut(s) | 492 |
| EciI | GGCGGA | 1 cut(s) | 155 |
| Eco130I | CCWWGG | 2 cut(s) | 899, 1057 |
| Eco47I | GGWCC | 1 cut(s) | 929 |
| Eco47III | AGCGCT | 2 cut(s) | 492, 503 |
| Eco57I | CTGAAG | 1 cut(s) | 747 |
| Eco72I | CACGTG | 1 cut(s) | 983 |
| EcoRII | CCWGG | 3 cut(s) | 60, 320, 948 |
| EcoT14I | CCWWGG | 2 cut(s) | 899, 1057 |
| ErhI | CCWWGG | 2 cut(s) | 899, 1057 |
| FaeI | CATG | 8 cut(s) | 259, 306, 340, 625, 797, 854, 917, 1002 |
| FaqI | GGGAC | 3 cut(s) | 260, 924, 933 |
| FatI | CATG | 8 cut(s) | 255, 302, 336, 621, 793, 850, 913, 998 |
| FauI | CCCGC | 4 cut(s) | 39, 50, 200, 1076 |
| Fnu4HI | GCNGC | 7 cut(s) | 5, 12, 20, 39, 90, 102, 240 |
| FokI | GGATG | 3 cut(s) | 120, 319, 482 |
| Fsp4HI | GCNGC | 7 cut(s) | 5, 12, 20, 39, 90, 102, 240 |
| FspBI | CTAG | 5 cut(s) | 494, 806, 900, 1026, 1058 |
| GlaI | GCGC | 6 cut(s) | 46, 125, 196, 260, 492, 503 |
| GluI | GCNGC | 7 cut(s) | 5, 12, 20, 39, 90, 102, 240 |
| GsaI | CCCAGC | 1 cut(s) | 216 |
| HaeII | RGCGCY | 2 cut(s) | 494, 505 |
| HapII | CCGG | 1 cut(s) | 437 |
| HgaI | GACGC | 1 cut(s) | 262 |
| HhaI | GCGC | 6 cut(s) | 47, 126, 197, 261, 493, 504 |
| Hin1II | CATG | 8 cut(s) | 259, 306, 340, 625, 797, 854, 917, 1002 |
| Hin6I | GCGC | 6 cut(s) | 45, 124, 195, 259, 491, 502 |
| HinP1I | GCGC | 6 cut(s) | 45, 124, 195, 259, 491, 502 |
| HinfI | GANTC | 4 cut(s) | 344, 521, 630, 673 |
| HpaII | CCGG | 1 cut(s) | 437 |
| Hpy166II | GTNNAC | 2 cut(s) | 28, 638 |
| Hpy188I | TCNGA | 2 cut(s) | 358, 601 |
| Hpy188III | TCNNGA | 2 cut(s) | 232, 851 |
| Hpy8I | GTNNAC | 2 cut(s) | 28, 638 |
| HpyAV | CCTTC | 4 cut(s) | 535, 535, 694, 947 |
| HpyCH4III | ACNGT | 2 cut(s) | 368, 722 |
| HpyCH4IV | ACGT | 4 cut(s) | 922, 982, 1035, 1074 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 25, 44, 98, 110, 203, 217, 252, 279, 499 |
| HpyF3I | CTNAG | 3 cut(s) | 251, 786, 840 |
| HpySE526I | ACGT | 4 cut(s) | 922, 982, 1035, 1074 |
| Hsp92II | CATG | 8 cut(s) | 259, 306, 340, 625, 797, 854, 917, 1002 |
| HspAI | GCGC | 6 cut(s) | 45, 124, 195, 259, 491, 502 |
| Kzo9I | GATC | 4 cut(s) | 324, 439, 462, 744 |
| LguI | GCTCTTC | 1 cut(s) | 492 |
| LmnI | GCTCC | 5 cut(s) | 76, 131, 251, 889, 1083 |
| Lsp1109I | GCAGC | 7 cut(s) | 6, 16, 23, 25, 76, 113, 226 |
| LweI | GCATC | 2 cut(s) | 56, 460 |
| MaeI | CTAG | 5 cut(s) | 494, 806, 900, 1026, 1058 |
| MaeII | ACGT | 4 cut(s) | 922, 982, 1035, 1074 |
| MaeIII | GTNAC | 2 cut(s) | 646, 1031 |
| MalI | GATC | 4 cut(s) | 326, 441, 464, 746 |
| MboI | GATC | 4 cut(s) | 324, 439, 462, 744 |
| MboII | GAAGA | 4 cut(s) | 42, 509, 520, 682 |
| MflI | RGATCY | 1 cut(s) | 439 |
| MhlI | GDGCHC | 2 cut(s) | 30, 1080 |
| MluCI | AATT | 6 cut(s) | 595, 663, 814, 820, 859, 1084 |
| MlyI | GAGTC | 2 cut(s) | 338, 667 |
| MseI | TTAA | 2 cut(s) | 662, 1087 |
| MslI | CAYNNNNRTG | 1 cut(s) | 806 |
| MspA1I | CMGCKG | 1 cut(s) | 239 |
| MspI | CCGG | 1 cut(s) | 437 |
| MspR9I | CCNGG | 4 cut(s) | 62, 322, 437, 950 |
| Mva1269I | GAATGC | 1 cut(s) | 1069 |
| MvaI | CCWGG | 3 cut(s) | 62, 322, 950 |
| MvnI | CGCG | 2 cut(s) | 45, 195 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 25, 44, 98, 110, 203, 217, 252, 279, 499 |
| NciI | CCSGG | 1 cut(s) | 437 |
| NdeII | GATC | 4 cut(s) | 324, 439, 462, 744 |
| NlaIII | CATG | 8 cut(s) | 259, 306, 340, 625, 797, 854, 917, 1002 |
| NlaIV | GGNNCC | 2 cut(s) | 930, 1047 |
| NmuCI | GTSAC | 1 cut(s) | 646 |
| NspI | RCATGY | 2 cut(s) | 259, 1002 |
| PaeI | GCATGC | 1 cut(s) | 259 |
| PagI | TCATGA | 1 cut(s) | 850 |
| PaqCI | CACCTGC | 1 cut(s) | 303 |
| PciI | ACATGT | 1 cut(s) | 998 |
| PciSI | GCTCTTC | 1 cut(s) | 492 |
| PctI | GAATGC | 1 cut(s) | 1069 |
| PfeI | GAWTC | 2 cut(s) | 521, 630 |
| PkrI | GCNGC | 7 cut(s) | 6, 13, 21, 40, 91, 103, 241 |
| PleI | GAGTC | 2 cut(s) | 338, 667 |
| PmaCI | CACGTG | 1 cut(s) | 983 |
| PmlI | CACGTG | 1 cut(s) | 983 |
| PpsI | GAGTC | 2 cut(s) | 338, 667 |
| Ppu21I | YACGTR | 1 cut(s) | 983 |
| PscI | ACATGT | 1 cut(s) | 998 |
| PsiI | TTATAA | 2 cut(s) | 819, 864 |
| Psp6I | CCWGG | 3 cut(s) | 60, 320, 948 |
| PspCI | CACGTG | 1 cut(s) | 983 |
| PspFI | CCCAGC | 1 cut(s) | 212 |
| PspGI | CCWGG | 3 cut(s) | 60, 320, 948 |
| PspN4I | GGNNCC | 2 cut(s) | 930, 1047 |
| PspPI | GGNCC | 1 cut(s) | 929 |
| PstI | CTGCAG | 3 cut(s) | 13, 103, 175 |
| PsuI | RGATCY | 1 cut(s) | 439 |
| RsaI | GTAC | 1 cut(s) | 724 |
| RsaNI | GTAC | 1 cut(s) | 723 |
| RseI | CAYNNNNRTG | 1 cut(s) | 806 |
| SapI | GCTCTTC | 1 cut(s) | 492 |
| SaqAI | TTAA | 2 cut(s) | 662, 1087 |
| SatI | GCNGC | 7 cut(s) | 5, 12, 20, 39, 90, 102, 240 |
| Sau3AI | GATC | 4 cut(s) | 324, 439, 462, 744 |
| Sau96I | GGNCC | 1 cut(s) | 929 |
| SchI | GAGTC | 2 cut(s) | 338, 667 |
| ScrFI | CCNGG | 4 cut(s) | 62, 322, 437, 950 |
| SduI | GDGCHC | 2 cut(s) | 30, 1080 |
| SfaNI | GCATC | 2 cut(s) | 56, 460 |
| SfcI | CTRYAG | 4 cut(s) | 9, 99, 171, 780 |
| SinI | GGWCC | 1 cut(s) | 929 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 806 |
| SmlI | CTYRAG | 1 cut(s) | 230 |
| SmoI | CTYRAG | 1 cut(s) | 230 |
| SpeI | ACTAGT | 1 cut(s) | 805 |
| SphI | GCATGC | 1 cut(s) | 259 |
| Sse9I | AATT | 6 cut(s) | 595, 663, 814, 820, 859, 1084 |
| SsiI | CCGC | 6 cut(s) | 32, 43, 166, 193, 237, 1069 |
| SspI | AATATT | 1 cut(s) | 411 |
| SspMI | CTAG | 5 cut(s) | 494, 806, 900, 1026, 1058 |
| StyD4I | CCNGG | 4 cut(s) | 60, 320, 435, 948 |
| StyI | CCWWGG | 2 cut(s) | 899, 1057 |
| TaaI | ACNGT | 2 cut(s) | 368, 722 |
| TaiI | ACGT | 4 cut(s) | 925, 985, 1038, 1077 |
| TaqI | TCGA | 3 cut(s) | 311, 327, 461 |
| TasI | AATT | 6 cut(s) | 595, 663, 814, 820, 859, 1084 |
| TfiI | GAWTC | 2 cut(s) | 521, 630 |
| Tru1I | TTAA | 2 cut(s) | 662, 1087 |
| Tru9I | TTAA | 2 cut(s) | 662, 1087 |
| TseFI | GTSAC | 1 cut(s) | 646 |
| TseI | GCWGC | 7 cut(s) | 4, 11, 19, 38, 89, 101, 239 |
| Tsp45I | GTSAC | 1 cut(s) | 646 |
| TspDTI | ATGAA | 3 cut(s) | 330, 746, 839 |
| TspGWI | ACGGA | 1 cut(s) | 757 |
| VneI | GTGCAC | 1 cut(s) | 26 |
| VpaK11BI | GGWCC | 1 cut(s) | 929 |
| XceI | RCATGY | 2 cut(s) | 259, 1002 |
| XmaJI | CCTAGG | 2 cut(s) | 899, 1057 |
| XspI | CTAG | 5 cut(s) | 494, 806, 900, 1026, 1058 |