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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 637 |
| Acc36I | ACCTGC | 1 cut(s) | 637 |
| AciI | CCGC | 1 cut(s) | 489 |
| AclWI | GGATC | 3 cut(s) | 56, 69, 258 |
| AcoI | YGGCCR | 1 cut(s) | 490 |
| AcuI | CTGAAG | 4 cut(s) | 147, 213, 264, 453 |
| AcvI | CACGTG | 1 cut(s) | 68 |
| AfaI | GTAC | 2 cut(s) | 47, 736 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 55, 535, 536, 763 |
| AgsI | TTSAA | 2 cut(s) | 610, 746 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 169, 679 |
| AjnI | CCWGG | 1 cut(s) | 255 |
| AluBI | AGCT | 3 cut(s) | 317, 382, 404 |
| AluI | AGCT | 3 cut(s) | 317, 382, 404 |
| Alw21I | GWGCWC | 2 cut(s) | 319, 700 |
| Alw26I | GTCTC | 1 cut(s) | 770 |
| AlwI | GGATC | 3 cut(s) | 56, 69, 258 |
| AoxI | GGCC | 3 cut(s) | 490, 526, 597 |
| ApeKI | GCWGC | 2 cut(s) | 145, 301 |
| AspLEI | GCGC | 2 cut(s) | 156, 579 |
| AspS9I | GGNCC | 4 cut(s) | 527, 598, 673, 681 |
| AsuHPI | GGTGA | 1 cut(s) | 95 |
| AvaII | GGWCC | 2 cut(s) | 673, 681 |
| BamHI | GGATCC | 1 cut(s) | 61 |
| BanII | GRGCYC | 1 cut(s) | 319 |
| BbrPI | CACGTG | 1 cut(s) | 68 |
| BbsI | GAAGAC | 2 cut(s) | 22, 269 |
| Bbv12I | GWGCWC | 2 cut(s) | 319, 700 |
| BbvCI | CCTCAGC | 1 cut(s) | 54 |
| BbvI | GCAGC | 2 cut(s) | 157, 313 |
| BccI | CCATC | 3 cut(s) | 508, 538, 781 |
| BceAI | ACGGC | 1 cut(s) | 678 |
| BciT130I | CCWGG | 1 cut(s) | 257 |
| BcoDI | GTCTC | 1 cut(s) | 770 |
| BfmI | CTRYAG | 1 cut(s) | 299 |
| BfoI | RGCGCY | 1 cut(s) | 580 |
| BfuAI | ACCTGC | 1 cut(s) | 637 |
| BisI | GCNGC | 3 cut(s) | 146, 302, 490 |
| BlsI | GCNGC | 3 cut(s) | 147, 303, 491 |
| Bme1390I | CCNGG | 1 cut(s) | 257 |
| Bme18I | GGWCC | 2 cut(s) | 673, 681 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 169, 679 |
| BmgT120I | GGNCC | 4 cut(s) | 527, 598, 673, 681 |
| BmiI | GGNNCC | 4 cut(s) | 63, 600, 667, 683 |
| BmrFI | CCNGG | 1 cut(s) | 257 |
| BmrI | ACTGGG | 1 cut(s) | 423 |
| BmsI | GCATC | 1 cut(s) | 706 |
| BmuI | ACTGGG | 1 cut(s) | 423 |
| BpiI | GAAGAC | 2 cut(s) | 22, 269 |
| BpmI | CTGGAG | 1 cut(s) | 278 |
| Bpu10I | CCTNAGC | 1 cut(s) | 54 |
| BpuEI | CTTGAG | 1 cut(s) | 203 |
| BsaAI | YACGTR | 1 cut(s) | 68 |
| BsaBI | GATNNNNATC | 2 cut(s) | 8, 720 |
| BsaJI | CCNNGG | 5 cut(s) | 508, 523, 534, 594, 669 |
| BsaWI | WCCGGW | 1 cut(s) | 772 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 55, 535, 536, 763 |
| Bse1I | ACTGG | 2 cut(s) | 146, 418 |
| Bse3DI | GCAATG | 1 cut(s) | 235 |
| Bse8I | GATNNNNATC | 2 cut(s) | 8, 720 |
| BseBI | CCWGG | 1 cut(s) | 257 |
| BseDI | CCNNGG | 5 cut(s) | 508, 523, 534, 594, 669 |
| BseGI | GGATG | 4 cut(s) | 9, 500, 530, 721 |
| BseJI | GATNNNNATC | 2 cut(s) | 8, 720 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 55, 535, 536, 763 |
| BseMI | GCAATG | 1 cut(s) | 235 |
| BseMII | CTCAG | 3 cut(s) | 33, 45, 332 |
| BseNI | ACTGG | 2 cut(s) | 146, 418 |
| BseRI | GAGGAG | 1 cut(s) | 71 |
| BseXI | GCAGC | 2 cut(s) | 157, 313 |
| BshFI | GGCC | 3 cut(s) | 492, 528, 599 |
| BsiHKAI | GWGCWC | 2 cut(s) | 319, 700 |
| BsiSI | CCGG | 1 cut(s) | 773 |
| BsiWI | CGTACG | 1 cut(s) | 734 |
| BslFI | GGGAC | 1 cut(s) | 667 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 55, 535, 536, 763 |
| BsmAI | GTCTC | 1 cut(s) | 770 |
| BsmFI | GGGAC | 1 cut(s) | 667 |
| BsnI | GGCC | 3 cut(s) | 492, 528, 599 |
| Bsp1286I | GDGCHC | 2 cut(s) | 319, 700 |
| Bsp143I | GATC | 7 cut(s) | 3, 61, 91, 100, 209, 250, 345 |
| BspACI | CCGC | 1 cut(s) | 489 |
| BspANI | GGCC | 3 cut(s) | 492, 528, 599 |
| BspCNI | CTCAG | 3 cut(s) | 34, 46, 331 |
| BspLI | GGNNCC | 4 cut(s) | 63, 600, 667, 683 |
| BspMAI | CTGCAG | 1 cut(s) | 303 |
| BspMI | ACCTGC | 1 cut(s) | 637 |
| BspPI | GGATC | 3 cut(s) | 56, 69, 258 |
| BsrDI | GCAATG | 1 cut(s) | 235 |
| BsrI | ACTGG | 2 cut(s) | 146, 418 |
| BssECI | CCNNGG | 5 cut(s) | 508, 523, 534, 594, 669 |
| BssMI | GATC | 7 cut(s) | 3, 61, 91, 100, 209, 250, 345 |
| BssT1I | CCWWGG | 5 cut(s) | 508, 523, 534, 594, 669 |
| Bst2UI | CCWGG | 1 cut(s) | 257 |
| Bst4CI | ACNGT | 1 cut(s) | 424 |
| Bst6I | CTCTTC | 1 cut(s) | 240 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 151 |
| BstBAI | YACGTR | 1 cut(s) | 68 |
| BstDEI | CTNAG | 4 cut(s) | 42, 54, 318, 330 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 53 |
| BstF5I | GGATG | 4 cut(s) | 9, 500, 530, 721 |
| BstH2I | RGCGCY | 1 cut(s) | 580 |
| BstHHI | GCGC | 2 cut(s) | 156, 579 |
| BstKTI | GATC | 7 cut(s) | 6, 64, 94, 103, 212, 253, 348 |
| BstMAI | GTCTC | 1 cut(s) | 770 |
| BstMBI | GATC | 7 cut(s) | 3, 61, 91, 100, 209, 250, 345 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 151, 379, 596 |
| BstNI | CCWGG | 1 cut(s) | 257 |
| BstSCI | CCNGG | 1 cut(s) | 255 |
| BstSFI | CTRYAG | 1 cut(s) | 299 |
| BstV1I | GCAGC | 2 cut(s) | 157, 313 |
| BstV2I | GAAGAC | 2 cut(s) | 22, 269 |
| BstX2I | RGATCY | 2 cut(s) | 61, 250 |
| BstYI | RGATCY | 2 cut(s) | 61, 250 |
| BsuRI | GGCC | 3 cut(s) | 492, 528, 599 |
| BtsCI | GGATG | 4 cut(s) | 9, 500, 530, 721 |
| BveI | ACCTGC | 1 cut(s) | 637 |
| CfoI | GCGC | 2 cut(s) | 156, 579 |
| Cfr13I | GGNCC | 4 cut(s) | 527, 598, 673, 681 |
| CseI | GACGC | 1 cut(s) | 38 |
| Csp6I | GTAC | 2 cut(s) | 46, 735 |
| CviAII | CATG | 1 cut(s) | 26 |
| CviQI | GTAC | 2 cut(s) | 46, 735 |
| DdeI | CTNAG | 4 cut(s) | 42, 54, 318, 330 |
| DpnI | GATC | 7 cut(s) | 5, 63, 93, 102, 211, 252, 347 |
| DpnII | GATC | 7 cut(s) | 3, 61, 91, 100, 209, 250, 345 |
| DriI | GACNNNNNGTC | 2 cut(s) | 169, 679 |
| EaeI | YGGCCR | 1 cut(s) | 490 |
| Eam1104I | CTCTTC | 1 cut(s) | 240 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 169, 679 |
| EarI | CTCTTC | 1 cut(s) | 240 |
| Ecl136II | GAGCTC | 1 cut(s) | 317 |
| Eco130I | CCWWGG | 5 cut(s) | 508, 523, 534, 594, 669 |
| Eco24I | GRGCYC | 1 cut(s) | 319 |
| Eco47I | GGWCC | 2 cut(s) | 673, 681 |
| Eco53kI | GAGCTC | 1 cut(s) | 317 |
| Eco57I | CTGAAG | 4 cut(s) | 147, 213, 264, 453 |
| Eco72I | CACGTG | 1 cut(s) | 68 |
| EcoICRI | GAGCTC | 1 cut(s) | 317 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 53 |
| EcoO109I | RGGNCCY | 1 cut(s) | 598 |
| EcoRII | CCWGG | 1 cut(s) | 255 |
| EcoT14I | CCWWGG | 5 cut(s) | 508, 523, 534, 594, 669 |
| EcoT22I | ATGCAT | 1 cut(s) | 721 |
| EcoT38I | GRGCYC | 1 cut(s) | 319 |
| ErhI | CCWWGG | 5 cut(s) | 508, 523, 534, 594, 669 |
| FaeI | CATG | 1 cut(s) | 29 |
| FaiI | YATR | 9 cut(s) | 21, 27, 76, 116, 186, 312, 444, 650, 721 |
| FaqI | GGGAC | 1 cut(s) | 667 |
| FatI | CATG | 1 cut(s) | 25 |
| Fnu4HI | GCNGC | 3 cut(s) | 146, 302, 490 |
| FokI | GGATG | 3 cut(s) | 487, 517, 728 |
| FriOI | GRGCYC | 1 cut(s) | 319 |
| Fsp4HI | GCNGC | 3 cut(s) | 146, 302, 490 |
| GlaI | GCGC | 2 cut(s) | 155, 578 |
| GluI | GCNGC | 3 cut(s) | 146, 302, 490 |
| GsuI | CTGGAG | 1 cut(s) | 278 |
| HaeII | RGCGCY | 1 cut(s) | 580 |
| HaeIII | GGCC | 3 cut(s) | 492, 528, 599 |
| HapII | CCGG | 1 cut(s) | 773 |
| HgaI | GACGC | 1 cut(s) | 38 |
| HhaI | GCGC | 2 cut(s) | 156, 579 |
| Hin1II | CATG | 1 cut(s) | 29 |
| Hin6I | GCGC | 2 cut(s) | 154, 577 |
| HinP1I | GCGC | 2 cut(s) | 154, 577 |
| HincII | GTYRAC | 1 cut(s) | 515 |
| HindII | GTYRAC | 1 cut(s) | 515 |
| HinfI | GANTC | 3 cut(s) | 204, 394, 746 |
| HpaII | CCGG | 1 cut(s) | 773 |
| HphI | GGTGA | 1 cut(s) | 95 |
| Hpy166II | GTNNAC | 3 cut(s) | 327, 515, 766 |
| Hpy188I | TCNGA | 6 cut(s) | 14, 193, 209, 321, 340, 800 |
| Hpy188III | TCNNGA | 1 cut(s) | 610 |
| Hpy8I | GTNNAC | 3 cut(s) | 327, 515, 766 |
| Hpy99I | CGWCG | 1 cut(s) | 735 |
| HpyAV | CCTTC | 2 cut(s) | 286, 700 |
| HpyCH4III | ACNGT | 1 cut(s) | 424 |
| HpyCH4IV | ACGT | 1 cut(s) | 67 |
| HpyCH4V | TGCA | 6 cut(s) | 37, 71, 228, 301, 719, 760 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 151, 379, 596 |
| HpyF3I | CTNAG | 4 cut(s) | 42, 54, 318, 330 |
| HpySE526I | ACGT | 1 cut(s) | 67 |
| Hsp92II | CATG | 1 cut(s) | 29 |
| HspAI | GCGC | 2 cut(s) | 154, 577 |
| Kzo9I | GATC | 7 cut(s) | 3, 61, 91, 100, 209, 250, 345 |
| LmnI | GCTCC | 2 cut(s) | 595, 703 |
| Lsp1109I | GCAGC | 2 cut(s) | 157, 313 |
| LweI | GCATC | 1 cut(s) | 706 |
| MaeII | ACGT | 1 cut(s) | 67 |
| MalI | GATC | 7 cut(s) | 5, 63, 93, 102, 211, 252, 347 |
| MboI | GATC | 7 cut(s) | 3, 61, 91, 100, 209, 250, 345 |
| MboII | GAAGA | 4 cut(s) | 27, 257, 274, 403 |
| MflI | RGATCY | 2 cut(s) | 61, 250 |
| MhlI | GDGCHC | 2 cut(s) | 319, 700 |
| MluCI | AATT | 1 cut(s) | 187 |
| MnlI | CCTC | 7 cut(s) | 49, 52, 241, 468, 533, 596, 784 |
| Mph1103I | ATGCAT | 1 cut(s) | 721 |
| MseI | TTAA | 1 cut(s) | 168 |
| MslI | CAYNNNNRTG | 1 cut(s) | 24 |
| MspA1I | CMGCKG | 1 cut(s) | 382 |
| MspI | CCGG | 1 cut(s) | 773 |
| MspR9I | CCNGG | 1 cut(s) | 257 |
| MvaI | CCWGG | 1 cut(s) | 257 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 151, 379, 596 |
| NdeII | GATC | 7 cut(s) | 3, 61, 91, 100, 209, 250, 345 |
| NlaIII | CATG | 1 cut(s) | 29 |
| NlaIV | GGNNCC | 4 cut(s) | 63, 600, 667, 683 |
| NsiI | ATGCAT | 1 cut(s) | 721 |
| PaqCI | CACCTGC | 1 cut(s) | 637 |
| PfeI | GAWTC | 3 cut(s) | 204, 394, 746 |
| Pfl23II | CGTACG | 1 cut(s) | 734 |
| PfoI | TCCNGGA | 1 cut(s) | 255 |
| PkrI | GCNGC | 3 cut(s) | 147, 303, 491 |
| PmaCI | CACGTG | 1 cut(s) | 68 |
| PmlI | CACGTG | 1 cut(s) | 68 |
| Ppu21I | YACGTR | 1 cut(s) | 68 |
| Psp124BI | GAGCTC | 1 cut(s) | 319 |
| Psp6I | CCWGG | 1 cut(s) | 255 |
| PspCI | CACGTG | 1 cut(s) | 68 |
| PspGI | CCWGG | 1 cut(s) | 255 |
| PspLI | CGTACG | 1 cut(s) | 734 |
| PspN4I | GGNNCC | 4 cut(s) | 63, 600, 667, 683 |
| PspPI | GGNCC | 4 cut(s) | 527, 598, 673, 681 |
| PstI | CTGCAG | 1 cut(s) | 303 |
| PsuI | RGATCY | 2 cut(s) | 61, 250 |
| PvuII | CAGCTG | 1 cut(s) | 382 |
| RsaI | GTAC | 2 cut(s) | 47, 736 |
| RsaNI | GTAC | 2 cut(s) | 46, 735 |
| RseI | CAYNNNNRTG | 1 cut(s) | 24 |
| SacI | GAGCTC | 1 cut(s) | 319 |
| SaqAI | TTAA | 1 cut(s) | 168 |
| SatI | GCNGC | 3 cut(s) | 146, 302, 490 |
| Sau3AI | GATC | 7 cut(s) | 3, 61, 91, 100, 209, 250, 345 |
| Sau96I | GGNCC | 4 cut(s) | 527, 598, 673, 681 |
| ScrFI | CCNGG | 1 cut(s) | 257 |
| SduI | GDGCHC | 2 cut(s) | 319, 700 |
| SfaNI | GCATC | 1 cut(s) | 706 |
| SfcI | CTRYAG | 1 cut(s) | 299 |
| SinI | GGWCC | 2 cut(s) | 673, 681 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 24 |
| SmlI | CTYRAG | 1 cut(s) | 218 |
| SmoI | CTYRAG | 1 cut(s) | 218 |
| Sse9I | AATT | 1 cut(s) | 187 |
| SsiI | CCGC | 1 cut(s) | 489 |
| SspI | AATATT | 1 cut(s) | 292 |
| SstI | GAGCTC | 1 cut(s) | 319 |
| StyD4I | CCNGG | 1 cut(s) | 255 |
| StyI | CCWWGG | 5 cut(s) | 508, 523, 534, 594, 669 |
| TaaI | ACNGT | 1 cut(s) | 424 |
| TaiI | ACGT | 1 cut(s) | 70 |
| TaqI | TCGA | 4 cut(s) | 99, 202, 272, 406 |
| TasI | AATT | 1 cut(s) | 187 |
| TauI | GCSGC | 1 cut(s) | 492 |
| TfiI | GAWTC | 3 cut(s) | 204, 394, 746 |
| Tru1I | TTAA | 1 cut(s) | 168 |
| Tru9I | TTAA | 1 cut(s) | 168 |
| TseI | GCWGC | 2 cut(s) | 145, 301 |
| TspDTI | ATGAA | 4 cut(s) | 195, 246, 404, 653 |
| VpaK11BI | GGWCC | 2 cut(s) | 673, 681 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 53 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 72, 476, 709 |
| Zsp2I | ATGCAT | 1 cut(s) | 721 |