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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 900 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 250, 1236 |
| AccB1I | GGYRCC | 3 cut(s) | 393, 1076, 1390 |
| AccII | CGCG | 1 cut(s) | 1520 |
| AccIII | TCCGGA | 1 cut(s) | 1156 |
| AciI | CCGC | 3 cut(s) | 56, 868, 1481 |
| AclI | AACGTT | 1 cut(s) | 819 |
| AcoI | YGGCCR | 4 cut(s) | 78, 98, 282, 943 |
| AcsI | RAATTY | 1 cut(s) | 214 |
| AcuI | CTGAAG | 2 cut(s) | 451, 1431 |
| AcyI | GRCGYC | 3 cut(s) | 65, 1077, 1391 |
| AfaI | GTAC | 2 cut(s) | 90, 1479 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 769, 1187, 1215, 1258, 1359 |
| AflIII | ACRYGT | 2 cut(s) | 1306, 1474 |
| AgeI | ACCGGT | 1 cut(s) | 225 |
| AgsI | TTSAA | 8 cut(s) | 9, 29, 162, 551, 695, 883, 1017, 1374 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 469 |
| AjnI | CCWGG | 2 cut(s) | 41, 190 |
| AloI | GAACNNNNNNTCC | 6 cut(s) | 509, 541, 653, 685, 1354, 1386 |
| Alw21I | GWGCWC | 4 cut(s) | 525, 669, 1071, 1288 |
| Alw26I | GTCTC | 2 cut(s) | 930, 1003 |
| Alw44I | GTGCAC | 1 cut(s) | 1284 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 296 |
| Aor13HI | TCCGGA | 1 cut(s) | 1156 |
| AoxI | GGCC | 5 cut(s) | 78, 98, 282, 943, 1466 |
| ApaLI | GTGCAC | 1 cut(s) | 1284 |
| ApeKI | GCWGC | 7 cut(s) | 147, 262, 314, 384, 402, 405, 805 |
| ApoI | RAATTY | 1 cut(s) | 214 |
| AsiGI | ACCGGT | 1 cut(s) | 225 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 912 |
| AspLEI | GCGC | 2 cut(s) | 1079, 1393 |
| AspS9I | GGNCC | 4 cut(s) | 243, 278, 1238, 1466 |
| AsuC2I | CCSGG | 1 cut(s) | 128 |
| AsuHPI | GGTGA | 4 cut(s) | 60, 163, 230, 336 |
| AvaII | GGWCC | 3 cut(s) | 243, 278, 1238 |
| BaeGI | GKGCMC | 1 cut(s) | 1288 |
| BalI | TGGCCA | 2 cut(s) | 100, 945 |
| BanI | GGYRCC | 3 cut(s) | 393, 1076, 1390 |
| BanII | GRGCYC | 2 cut(s) | 50, 1071 |
| BbsI | GAAGAC | 3 cut(s) | 465, 780, 983 |
| Bbv12I | GWGCWC | 4 cut(s) | 525, 669, 1071, 1288 |
| BbvI | GCAGC | 7 cut(s) | 159, 249, 301, 396, 414, 417, 817 |
| BccI | CCATC | 8 cut(s) | 182, 359, 476, 506, 620, 650, 849, 925 |
| BceAI | ACGGC | 1 cut(s) | 78 |
| BciT130I | CCWGG | 2 cut(s) | 43, 192 |
| BclI | TGATCA | 1 cut(s) | 1554 |
| BcnI | CCSGG | 1 cut(s) | 128 |
| BcoDI | GTCTC | 2 cut(s) | 930, 1003 |
| BfaI | CTAG | 6 cut(s) | 335, 510, 654, 704, 1131, 1570 |
| BfmI | CTRYAG | 2 cut(s) | 382, 1168 |
| BfoI | RGCGCY | 2 cut(s) | 1080, 1394 |
| BisI | GCNGC | 7 cut(s) | 148, 263, 315, 385, 403, 406, 806 |
| BlsI | GCNGC | 7 cut(s) | 149, 264, 316, 386, 404, 407, 807 |
| Bme1390I | CCNGG | 3 cut(s) | 43, 128, 192 |
| Bme18I | GGWCC | 3 cut(s) | 243, 278, 1238 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 469 |
| BmgT120I | GGNCC | 4 cut(s) | 243, 278, 1238, 1466 |
| BmiI | GGNNCC | 9 cut(s) | 47, 75, 196, 395, 1078, 1292, 1392, 1407, 1418 |
| BmrFI | CCNGG | 3 cut(s) | 43, 128, 192 |
| BmrI | ACTGGG | 3 cut(s) | 284, 301, 334 |
| BmsI | GCATC | 2 cut(s) | 144, 308 |
| BmuI | ACTGGG | 3 cut(s) | 284, 301, 334 |
| BpiI | GAAGAC | 3 cut(s) | 465, 780, 983 |
| BpuEI | CTTGAG | 1 cut(s) | 821 |
| BpuMI | CCSGG | 1 cut(s) | 128 |
| BsaBI | GATNNNNATC | 2 cut(s) | 968, 1449 |
| BsaHI | GRCGYC | 3 cut(s) | 65, 1077, 1391 |
| BsaJI | CCNNGG | 3 cut(s) | 41, 1137, 1339 |
| BsaWI | WCCGGW | 4 cut(s) | 70, 225, 240, 1156 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 509, 539, 653, 683 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 769, 1187, 1215, 1258, 1359 |
| Bse118I | RCCGGY | 3 cut(s) | 76, 225, 280 |
| Bse1I | ACTGG | 5 cut(s) | 101, 250, 290, 307, 340 |
| Bse8I | GATNNNNATC | 2 cut(s) | 968, 1449 |
| BseAI | TCCGGA | 1 cut(s) | 1156 |
| BseBI | CCWGG | 2 cut(s) | 43, 192 |
| BseDI | CCNNGG | 3 cut(s) | 41, 1137, 1339 |
| BseGI | GGATG | 3 cut(s) | 135, 498, 642 |
| BseJI | GATNNNNATC | 2 cut(s) | 968, 1449 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 769, 1187, 1215, 1258, 1359 |
| BseNI | ACTGG | 5 cut(s) | 101, 250, 290, 307, 340 |
| BseRI | GAGGAG | 1 cut(s) | 1294 |
| BseSI | GKGCMC | 1 cut(s) | 1288 |
| BseXI | GCAGC | 7 cut(s) | 159, 249, 301, 396, 414, 417, 817 |
| BseYI | CCCAGC | 1 cut(s) | 372 |
| BsgI | GTGCAG | 1 cut(s) | 987 |
| Bsh1236I | CGCG | 1 cut(s) | 1520 |
| BshFI | GGCC | 5 cut(s) | 80, 100, 284, 945, 1468 |
| BshNI | GGYRCC | 3 cut(s) | 393, 1076, 1390 |
| BshTI | ACCGGT | 1 cut(s) | 225 |
| BsiHKAI | GWGCWC | 4 cut(s) | 525, 669, 1071, 1288 |
| BsiSI | CCGG | 9 cut(s) | 71, 77, 128, 226, 241, 281, 391, 411, 1157 |
| BslFI | GGGAC | 1 cut(s) | 1232 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 769, 1187, 1215, 1258, 1359 |
| BsmAI | GTCTC | 2 cut(s) | 930, 1003 |
| BsmBI | CGTCTC | 1 cut(s) | 1003 |
| BsmFI | GGGAC | 1 cut(s) | 1232 |
| BsmI | GAATGC | 1 cut(s) | 4 |
| BsnI | GGCC | 5 cut(s) | 80, 100, 284, 945, 1468 |
| Bsp1286I | GDGCHC | 5 cut(s) | 50, 525, 669, 1071, 1288 |
| Bsp13I | TCCGGA | 1 cut(s) | 1156 |
| Bsp143I | GATC | 5 cut(s) | 969, 1246, 1397, 1554, 1566 |
| Bsp19I | CCATGG | 2 cut(s) | 1137, 1339 |
| Bsp68I | TCGCGA | 1 cut(s) | 1520 |
| BspACI | CCGC | 3 cut(s) | 56, 868, 1481 |
| BspANI | GGCC | 5 cut(s) | 80, 100, 284, 945, 1468 |
| BspEI | TCCGGA | 1 cut(s) | 1156 |
| BspFNI | CGCG | 1 cut(s) | 1520 |
| BspHI | TCATGA | 3 cut(s) | 579, 723, 1063 |
| BspLI | GGNNCC | 9 cut(s) | 47, 75, 196, 395, 1078, 1292, 1392, 1407, 1418 |
| BspMAI | CTGCAG | 1 cut(s) | 386 |
| BspT107I | GGYRCC | 3 cut(s) | 393, 1076, 1390 |
| BsrFI | RCCGGY | 3 cut(s) | 76, 225, 280 |
| BsrI | ACTGG | 5 cut(s) | 101, 250, 290, 307, 340 |
| BssAI | RCCGGY | 3 cut(s) | 76, 225, 280 |
| BssECI | CCNNGG | 3 cut(s) | 41, 1137, 1339 |
| BssMI | GATC | 5 cut(s) | 969, 1246, 1397, 1554, 1566 |
| BssNI | GRCGYC | 3 cut(s) | 65, 1077, 1391 |
| BssT1I | CCWWGG | 2 cut(s) | 1137, 1339 |
| Bst2UI | CCWGG | 2 cut(s) | 43, 192 |
| Bst4CI | ACNGT | 1 cut(s) | 1295 |
| Bst6I | CTCTTC | 1 cut(s) | 1307 |
| BstACI | GRCGYC | 3 cut(s) | 65, 1077, 1391 |
| BstC8I | GCNNGC | 6 cut(s) | 286, 369, 378, 382, 537, 681 |
| BstDEI | CTNAG | 1 cut(s) | 1146 |
| BstDSI | CCRYGG | 2 cut(s) | 1137, 1339 |
| BstEII | GGTNACC | 1 cut(s) | 169 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 767 |
| BstF5I | GGATG | 3 cut(s) | 135, 498, 642 |
| BstFNI | CGCG | 1 cut(s) | 1520 |
| BstH2I | RGCGCY | 2 cut(s) | 1080, 1394 |
| BstHHI | GCGC | 2 cut(s) | 1079, 1393 |
| BstKTI | GATC | 5 cut(s) | 972, 1249, 1400, 1557, 1569 |
| BstMAI | GTCTC | 2 cut(s) | 930, 1003 |
| BstMBI | GATC | 5 cut(s) | 969, 1246, 1397, 1554, 1566 |
| BstNI | CCWGG | 2 cut(s) | 43, 192 |
| BstNSI | RCATGY | 2 cut(s) | 748, 1478 |
| BstPI | GGTNACC | 1 cut(s) | 169 |
| BstSCI | CCNGG | 3 cut(s) | 41, 126, 190 |
| BstSFI | CTRYAG | 2 cut(s) | 382, 1168 |
| BstSLI | GKGCMC | 1 cut(s) | 1288 |
| BstUI | CGCG | 1 cut(s) | 1520 |
| BstV1I | GCAGC | 7 cut(s) | 159, 249, 301, 396, 414, 417, 817 |
| BstV2I | GAAGAC | 3 cut(s) | 465, 780, 983 |
| BsuRI | GGCC | 5 cut(s) | 80, 100, 284, 945, 1468 |
| BtgI | CCRYGG | 2 cut(s) | 1137, 1339 |
| BtgZI | GCGATG | 1 cut(s) | 868 |
| BtsCI | GGATG | 3 cut(s) | 135, 498, 642 |
| BtsI | GCAGTG | 1 cut(s) | 294 |
| BtsIMutI | CAGTG | 2 cut(s) | 294, 1004 |
| BtuMI | TCGCGA | 1 cut(s) | 1520 |
| Cac8I | GCNNGC | 6 cut(s) | 286, 369, 378, 382, 537, 681 |
| CaiI | CAGNNNCTG | 1 cut(s) | 296 |
| CciI | TCATGA | 3 cut(s) | 579, 723, 1063 |
| CfoI | GCGC | 2 cut(s) | 1079, 1393 |
| Cfr10I | RCCGGY | 3 cut(s) | 76, 225, 280 |
| Cfr13I | GGNCC | 4 cut(s) | 243, 278, 1238, 1466 |
| CpoI | CGGWCCG | 1 cut(s) | 278 |
| CseI | GACGC | 3 cut(s) | 54, 408, 1200 |
| Csp6I | GTAC | 2 cut(s) | 89, 1478 |
| CspAI | ACCGGT | 1 cut(s) | 225 |
| CspI | CGGWCCG | 1 cut(s) | 278 |
| CviQI | GTAC | 2 cut(s) | 89, 1478 |
| DdeI | CTNAG | 1 cut(s) | 1146 |
| DinI | GGCGCC | 2 cut(s) | 1078, 1392 |
| DpnI | GATC | 5 cut(s) | 971, 1248, 1399, 1556, 1568 |
| DpnII | GATC | 5 cut(s) | 969, 1246, 1397, 1554, 1566 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 250, 1236 |
| DriI | GACNNNNNGTC | 1 cut(s) | 469 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 250, 1236 |
| EaeI | YGGCCR | 4 cut(s) | 78, 98, 282, 943 |
| Eam1104I | CTCTTC | 1 cut(s) | 1307 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 469 |
| EarI | CTCTTC | 1 cut(s) | 1307 |
| Ecl136II | GAGCTC | 1 cut(s) | 1069 |
| Eco130I | CCWWGG | 2 cut(s) | 1137, 1339 |
| Eco24I | GRGCYC | 2 cut(s) | 50, 1071 |
| Eco47I | GGWCC | 3 cut(s) | 243, 278, 1238 |
| Eco53kI | GAGCTC | 1 cut(s) | 1069 |
| Eco57I | CTGAAG | 2 cut(s) | 451, 1431 |
| Eco91I | GGTNACC | 1 cut(s) | 169 |
| EcoICRI | GAGCTC | 1 cut(s) | 1069 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 767 |
| EcoO65I | GGTNACC | 1 cut(s) | 169 |
| EcoRII | CCWGG | 2 cut(s) | 41, 190 |
| EcoT14I | CCWWGG | 2 cut(s) | 1137, 1339 |
| EcoT22I | ATGCAT | 1 cut(s) | 6 |
| EcoT38I | GRGCYC | 2 cut(s) | 50, 1071 |
| EgeI | GGCGCC | 2 cut(s) | 1078, 1392 |
| EheI | GGCGCC | 2 cut(s) | 1078, 1392 |
| ErhI | CCWWGG | 2 cut(s) | 1137, 1339 |
| Esp3I | CGTCTC | 1 cut(s) | 1003 |
| FaqI | GGGAC | 1 cut(s) | 1232 |
| FauNDI | CATATG | 1 cut(s) | 1243 |
| FbaI | TGATCA | 1 cut(s) | 1554 |
| Fnu4HI | GCNGC | 7 cut(s) | 148, 263, 315, 385, 403, 406, 806 |
| FokI | GGATG | 3 cut(s) | 122, 485, 629 |
| FriOI | GRGCYC | 2 cut(s) | 50, 1071 |
| Fsp4HI | GCNGC | 7 cut(s) | 148, 263, 315, 385, 403, 406, 806 |
| FspBI | CTAG | 6 cut(s) | 335, 510, 654, 704, 1131, 1570 |
| GlaI | GCGC | 2 cut(s) | 1078, 1392 |
| GluI | GCNGC | 7 cut(s) | 148, 263, 315, 385, 403, 406, 806 |
| GsaI | CCCAGC | 1 cut(s) | 376 |
| HaeII | RGCGCY | 2 cut(s) | 1080, 1394 |
| HaeIII | GGCC | 5 cut(s) | 80, 100, 284, 945, 1468 |
| HapII | CCGG | 9 cut(s) | 71, 77, 128, 226, 241, 281, 391, 411, 1157 |
| HgaI | GACGC | 3 cut(s) | 54, 408, 1200 |
| HhaI | GCGC | 2 cut(s) | 1079, 1393 |
| Hin1I | GRCGYC | 3 cut(s) | 65, 1077, 1391 |
| Hin6I | GCGC | 2 cut(s) | 1077, 1391 |
| HinP1I | GCGC | 2 cut(s) | 1077, 1391 |
| HincII | GTYRAC | 1 cut(s) | 1304 |
| HindII | GTYRAC | 1 cut(s) | 1304 |
| HindIII | AAGCTT | 1 cut(s) | 909 |
| HinfI | GANTC | 5 cut(s) | 187, 827, 979, 1160, 1450 |
| HpaII | CCGG | 9 cut(s) | 71, 77, 128, 226, 241, 281, 391, 411, 1157 |
| HphI | GGTGA | 4 cut(s) | 60, 163, 230, 336 |
| Hpy166II | GTNNAC | 2 cut(s) | 1286, 1304 |
| Hpy188I | TCNGA | 8 cut(s) | 232, 278, 516, 660, 907, 930, 1029, 1336 |
| Hpy8I | GTNNAC | 2 cut(s) | 1286, 1304 |
| Hpy99I | CGWCG | 2 cut(s) | 64, 402 |
| HpyAV | CCTTC | 5 cut(s) | 161, 168, 372, 1256, 1406 |
| HpyCH4III | ACNGT | 1 cut(s) | 1295 |
| HpyCH4IV | ACGT | 6 cut(s) | 519, 663, 819, 1048, 1306, 1513 |
| HpyCH4V | TGCA | 8 cut(s) | 4, 265, 299, 384, 1004, 1043, 1286, 1498 |
| HpyF3I | CTNAG | 1 cut(s) | 1146 |
| HpySE526I | ACGT | 6 cut(s) | 519, 663, 819, 1048, 1306, 1513 |
| Hsp92I | GRCGYC | 3 cut(s) | 65, 1077, 1391 |
| HspAI | GCGC | 2 cut(s) | 1077, 1391 |
| KasI | GGCGCC | 2 cut(s) | 1076, 1390 |
| Kpn2I | TCCGGA | 1 cut(s) | 1156 |
| Ksp22I | TGATCA | 1 cut(s) | 1554 |
| Kzo9I | GATC | 5 cut(s) | 969, 1246, 1397, 1554, 1566 |
| LmnI | GCTCC | 8 cut(s) | 45, 413, 609, 753, 1198, 1385, 1405, 1416 |
| Lsp1109I | GCAGC | 7 cut(s) | 159, 249, 301, 396, 414, 417, 817 |
| LweI | GCATC | 2 cut(s) | 144, 308 |
| MaeI | CTAG | 6 cut(s) | 335, 510, 654, 704, 1131, 1570 |
| MaeII | ACGT | 6 cut(s) | 519, 663, 819, 1048, 1306, 1513 |
| MaeIII | GTNAC | 6 cut(s) | 66, 169, 292, 342, 824, 1346 |
| MalI | GATC | 5 cut(s) | 971, 1248, 1399, 1556, 1568 |
| MboI | GATC | 5 cut(s) | 969, 1246, 1397, 1554, 1566 |
| MboII | GAAGA | 9 cut(s) | 119, 444, 465, 467, 470, 785, 988, 1129, 1324 |
| MhlI | GDGCHC | 5 cut(s) | 50, 525, 669, 1071, 1288 |
| MlsI | TGGCCA | 2 cut(s) | 100, 945 |
| MluCI | AATT | 6 cut(s) | 214, 573, 717, 1021, 1222, 1536 |
| MluNI | TGGCCA | 2 cut(s) | 100, 945 |
| Mly113I | GGCGCC | 2 cut(s) | 1077, 1391 |
| MlyI | GAGTC | 3 cut(s) | 821, 973, 1169 |
| MmeI | TCCRAC | 2 cut(s) | 256, 1359 |
| Mox20I | TGGCCA | 2 cut(s) | 100, 945 |
| Mph1103I | ATGCAT | 1 cut(s) | 6 |
| MroI | TCCGGA | 1 cut(s) | 1156 |
| MroXI | GAANNNNTTC | 1 cut(s) | 912 |
| MscI | TGGCCA | 2 cut(s) | 100, 945 |
| MseI | TTAA | 1 cut(s) | 765 |
| MslI | CAYNNNNRTG | 3 cut(s) | 594, 738, 1430 |
| Msp20I | TGGCCA | 2 cut(s) | 100, 945 |
| MspI | CCGG | 9 cut(s) | 71, 77, 128, 226, 241, 281, 391, 411, 1157 |
| MspR9I | CCNGG | 3 cut(s) | 43, 128, 192 |
| Mva1269I | GAATGC | 1 cut(s) | 4 |
| MvaI | CCWGG | 2 cut(s) | 43, 192 |
| MvnI | CGCG | 1 cut(s) | 1520 |
| NarI | GGCGCC | 2 cut(s) | 1077, 1391 |
| NciI | CCSGG | 1 cut(s) | 128 |
| NcoI | CCATGG | 2 cut(s) | 1137, 1339 |
| NdeI | CATATG | 1 cut(s) | 1243 |
| NdeII | GATC | 5 cut(s) | 969, 1246, 1397, 1554, 1566 |
| NlaIV | GGNNCC | 9 cut(s) | 47, 75, 196, 395, 1078, 1292, 1392, 1407, 1418 |
| NmuCI | GTSAC | 5 cut(s) | 66, 169, 292, 342, 824 |
| NruI | TCGCGA | 1 cut(s) | 1520 |
| NsiI | ATGCAT | 1 cut(s) | 6 |
| NspI | RCATGY | 2 cut(s) | 748, 1478 |
| PagI | TCATGA | 3 cut(s) | 579, 723, 1063 |
| PciI | ACATGT | 1 cut(s) | 1474 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1198 |
| PctI | GAATGC | 1 cut(s) | 4 |
| PdmI | GAANNNNTTC | 1 cut(s) | 912 |
| PfeI | GAWTC | 2 cut(s) | 187, 1450 |
| PflFI | GACNNNGTC | 1 cut(s) | 64 |
| PfoI | TCCNGGA | 1 cut(s) | 190 |
| PinAI | ACCGGT | 1 cut(s) | 225 |
| PkrI | GCNGC | 7 cut(s) | 149, 264, 316, 386, 404, 407, 807 |
| PleI | GAGTC | 3 cut(s) | 821, 973, 1168 |
| PluTI | GGCGCC | 2 cut(s) | 1080, 1394 |
| PpsI | GAGTC | 3 cut(s) | 821, 973, 1168 |
| PscI | ACATGT | 1 cut(s) | 1474 |
| PsiI | TTATAA | 1 cut(s) | 900 |
| Psp124BI | GAGCTC | 1 cut(s) | 1071 |
| Psp1406I | AACGTT | 1 cut(s) | 819 |
| Psp6I | CCWGG | 2 cut(s) | 41, 190 |
| PspEI | GGTNACC | 1 cut(s) | 169 |
| PspFI | CCCAGC | 1 cut(s) | 372 |
| PspGI | CCWGG | 2 cut(s) | 41, 190 |
| PspN4I | GGNNCC | 9 cut(s) | 47, 75, 196, 395, 1078, 1292, 1392, 1407, 1418 |
| PspPI | GGNCC | 4 cut(s) | 243, 278, 1238, 1466 |
| PstI | CTGCAG | 1 cut(s) | 386 |
| PstNI | CAGNNNCTG | 1 cut(s) | 296 |
| PsyI | GACNNNGTC | 1 cut(s) | 64 |
| RruI | TCGCGA | 1 cut(s) | 1520 |
| RsaI | GTAC | 2 cut(s) | 90, 1479 |
| RsaNI | GTAC | 2 cut(s) | 89, 1478 |
| RseI | CAYNNNNRTG | 3 cut(s) | 594, 738, 1430 |
| Rsr2I | CGGWCCG | 1 cut(s) | 278 |
| RsrII | CGGWCCG | 1 cut(s) | 278 |
| SacI | GAGCTC | 1 cut(s) | 1071 |
| SaqAI | TTAA | 1 cut(s) | 765 |
| SatI | GCNGC | 7 cut(s) | 148, 263, 315, 385, 403, 406, 806 |
| Sau3AI | GATC | 5 cut(s) | 969, 1246, 1397, 1554, 1566 |
| Sau96I | GGNCC | 4 cut(s) | 243, 278, 1238, 1466 |
| SchI | GAGTC | 3 cut(s) | 821, 973, 1169 |
| ScrFI | CCNGG | 3 cut(s) | 43, 128, 192 |
| SduI | GDGCHC | 5 cut(s) | 50, 525, 669, 1071, 1288 |
| SfaNI | GCATC | 2 cut(s) | 144, 308 |
| SfcI | CTRYAG | 2 cut(s) | 382, 1168 |
| SfoI | GGCGCC | 2 cut(s) | 1078, 1392 |
| SinI | GGWCC | 3 cut(s) | 243, 278, 1238 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 594, 738, 1430 |
| SmlI | CTYRAG | 1 cut(s) | 800 |
| SmoI | CTYRAG | 1 cut(s) | 800 |
| Sse9I | AATT | 6 cut(s) | 214, 573, 717, 1021, 1222, 1536 |
| SsiI | CCGC | 3 cut(s) | 56, 868, 1481 |
| SspDI | GGCGCC | 2 cut(s) | 1076, 1390 |
| SspMI | CTAG | 6 cut(s) | 335, 510, 654, 704, 1131, 1570 |
| SstI | GAGCTC | 1 cut(s) | 1071 |
| StyD4I | CCNGG | 3 cut(s) | 41, 126, 190 |
| StyI | CCWWGG | 2 cut(s) | 1137, 1339 |
| TaaI | ACNGT | 1 cut(s) | 1295 |
| TaiI | ACGT | 6 cut(s) | 522, 666, 822, 1051, 1309, 1516 |
| TaqI | TCGA | 3 cut(s) | 972, 1396, 1443 |
| TasI | AATT | 6 cut(s) | 214, 573, 717, 1021, 1222, 1536 |
| TfiI | GAWTC | 2 cut(s) | 187, 1450 |
| Tru1I | TTAA | 1 cut(s) | 765 |
| Tru9I | TTAA | 1 cut(s) | 765 |
| TscAI | CASTG | 2 cut(s) | 301, 1011 |
| TseFI | GTSAC | 5 cut(s) | 66, 169, 292, 342, 824 |
| TseI | GCWGC | 7 cut(s) | 147, 262, 314, 384, 402, 405, 805 |
| Tsp45I | GTSAC | 5 cut(s) | 66, 169, 292, 342, 824 |
| TspDTI | ATGAA | 6 cut(s) | 608, 627, 752, 771, 1052, 1097 |
| TspGWI | ACGGA | 1 cut(s) | 1303 |
| TspRI | CASTG | 2 cut(s) | 301, 1011 |
| Tth111I | GACNNNGTC | 1 cut(s) | 64 |
| VneI | GTGCAC | 1 cut(s) | 1284 |
| VpaK11BI | GGWCC | 3 cut(s) | 243, 278, 1238 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 767 |
| XapI | RAATTY | 1 cut(s) | 214 |
| XceI | RCATGY | 2 cut(s) | 748, 1478 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 786 |
| XmnI | GAANNNNTTC | 1 cut(s) | 912 |
| XspI | CTAG | 6 cut(s) | 335, 510, 654, 704, 1131, 1570 |
| Zsp2I | ATGCAT | 1 cut(s) | 6 |