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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 254 |
| AatII | GACGTC | 1 cut(s) | 161 |
| AccB1I | GGYRCC | 1 cut(s) | 1025 |
| AciI | CCGC | 3 cut(s) | 231, 855, 1167 |
| AclWI | GGATC | 3 cut(s) | 222, 734, 804 |
| AcoI | YGGCCR | 2 cut(s) | 276, 1012 |
| AcsI | RAATTY | 1 cut(s) | 611 |
| AcuI | CTGAAG | 1 cut(s) | 222 |
| AcyI | GRCGYC | 2 cut(s) | 158, 1026 |
| AfaI | GTAC | 1 cut(s) | 431 |
| AflII | CTTAAG | 1 cut(s) | 890 |
| AflIII | ACRYGT | 1 cut(s) | 178 |
| AgsI | TTSAA | 3 cut(s) | 38, 559, 1063 |
| AjiI | CACGTC | 3 cut(s) | 181, 256, 319 |
| AjnI | CCWGG | 1 cut(s) | 288 |
| AluBI | AGCT | 8 cut(s) | 209, 242, 264, 338, 344, 745, 1148, 1199 |
| AluI | AGCT | 8 cut(s) | 209, 242, 264, 338, 344, 745, 1148, 1199 |
| Alw21I | GWGCWC | 1 cut(s) | 747 |
| Alw26I | GTCTC | 1 cut(s) | 475 |
| AlwI | GGATC | 3 cut(s) | 222, 734, 804 |
| AoxI | GGCC | 4 cut(s) | 76, 101, 276, 1012 |
| ApeKI | GCWGC | 5 cut(s) | 11, 169, 214, 261, 362 |
| ApoI | RAATTY | 1 cut(s) | 611 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 486, 588 |
| AspLEI | GCGC | 2 cut(s) | 854, 1028 |
| AspS9I | GGNCC | 2 cut(s) | 77, 102 |
| AsuC2I | CCSGG | 1 cut(s) | 314 |
| AsuHPI | GGTGA | 3 cut(s) | 190, 394, 1156 |
| BaeGI | GKGCMC | 1 cut(s) | 1135 |
| BalI | TGGCCA | 1 cut(s) | 1014 |
| BanI | GGYRCC | 1 cut(s) | 1025 |
| BanII | GRGCYC | 1 cut(s) | 747 |
| BbsI | GAAGAC | 4 cut(s) | 64, 96, 456, 659 |
| Bbv12I | GWGCWC | 1 cut(s) | 747 |
| BbvI | GCAGC | 5 cut(s) | 23, 181, 201, 273, 374 |
| BccI | CCATC | 5 cut(s) | 275, 398, 525, 679, 717 |
| BceAI | ACGGC | 1 cut(s) | 291 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 524, 558, 698, 732 |
| BciT130I | CCWGG | 1 cut(s) | 290 |
| BciVI | GTATCC | 1 cut(s) | 889 |
| BcnI | CCSGG | 1 cut(s) | 314 |
| BcoDI | GTCTC | 1 cut(s) | 475 |
| BfaI | CTAG | 4 cut(s) | 146, 309, 521, 1235 |
| BfmI | CTRYAG | 2 cut(s) | 167, 717 |
| BfoI | RGCGCY | 1 cut(s) | 1029 |
| BfrI | CTTAAG | 1 cut(s) | 890 |
| BfuI | GTATCC | 1 cut(s) | 889 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 371 |
| BglII | AGATCT | 1 cut(s) | 565 |
| BisI | GCNGC | 6 cut(s) | 12, 170, 215, 262, 363, 855 |
| BlsI | GCNGC | 6 cut(s) | 13, 171, 216, 263, 364, 856 |
| Bme1390I | CCNGG | 2 cut(s) | 290, 314 |
| BmgBI | CACGTC | 3 cut(s) | 181, 256, 319 |
| BmgT120I | GGNCC | 2 cut(s) | 77, 102 |
| BmiI | GGNNCC | 2 cut(s) | 968, 1027 |
| BmrFI | CCNGG | 2 cut(s) | 290, 314 |
| BmrI | ACTGGG | 1 cut(s) | 196 |
| BmsI | GCATC | 1 cut(s) | 625 |
| BmuI | ACTGGG | 1 cut(s) | 196 |
| BpiI | GAAGAC | 4 cut(s) | 64, 96, 456, 659 |
| BpmI | CTGGAG | 1 cut(s) | 410 |
| BpuEI | CTTGAG | 2 cut(s) | 323, 324 |
| BpuMI | CCSGG | 1 cut(s) | 314 |
| Bsa29I | ATCGAT | 1 cut(s) | 708 |
| BsaHI | GRCGYC | 2 cut(s) | 158, 1026 |
| BsaI | GGTCTC | 1 cut(s) | 475 |
| BsaJI | CCNNGG | 1 cut(s) | 813 |
| Bse1I | ACTGG | 2 cut(s) | 202, 427 |
| BseBI | CCWGG | 1 cut(s) | 290 |
| BseCI | ATCGAT | 1 cut(s) | 708 |
| BseDI | CCNNGG | 1 cut(s) | 813 |
| BseGI | GGATG | 4 cut(s) | 393, 421, 728, 783 |
| BseMII | CTCAG | 1 cut(s) | 1077 |
| BseNI | ACTGG | 2 cut(s) | 202, 427 |
| BseSI | GKGCMC | 1 cut(s) | 1135 |
| BseX3I | CGGCCG | 1 cut(s) | 276 |
| BseXI | GCAGC | 5 cut(s) | 23, 181, 201, 273, 374 |
| BsgI | GTGCAG | 1 cut(s) | 111 |
| Bsh1285I | CGRYCG | 1 cut(s) | 279 |
| BshFI | GGCC | 4 cut(s) | 78, 103, 278, 1014 |
| BshNI | GGYRCC | 1 cut(s) | 1025 |
| BshVI | ATCGAT | 1 cut(s) | 708 |
| BsiEI | CGRYCG | 1 cut(s) | 279 |
| BsiHKAI | GWGCWC | 1 cut(s) | 747 |
| BsiSI | CCGG | 1 cut(s) | 314 |
| BsmAI | GTCTC | 1 cut(s) | 475 |
| BsnI | GGCC | 4 cut(s) | 78, 103, 278, 1014 |
| Bso31I | GGTCTC | 1 cut(s) | 475 |
| Bsp1286I | GDGCHC | 2 cut(s) | 747, 1135 |
| Bsp143I | GATC | 8 cut(s) | 142, 227, 565, 627, 726, 809, 1219, 1228 |
| BspACI | CCGC | 3 cut(s) | 231, 855, 1167 |
| BspANI | GGCC | 4 cut(s) | 78, 103, 278, 1014 |
| BspCNI | CTCAG | 1 cut(s) | 1078 |
| BspDI | ATCGAT | 1 cut(s) | 708 |
| BspHI | TCATGA | 1 cut(s) | 1222 |
| BspLI | GGNNCC | 2 cut(s) | 968, 1027 |
| BspMAI | CTGCAG | 2 cut(s) | 171, 721 |
| BspPI | GGATC | 3 cut(s) | 222, 734, 804 |
| BspT107I | GGYRCC | 1 cut(s) | 1025 |
| BspTI | CTTAAG | 1 cut(s) | 890 |
| BspTNI | GGTCTC | 1 cut(s) | 475 |
| BsrI | ACTGG | 2 cut(s) | 202, 427 |
| BssECI | CCNNGG | 1 cut(s) | 813 |
| BssMI | GATC | 8 cut(s) | 142, 227, 565, 627, 726, 809, 1219, 1228 |
| BssNI | GRCGYC | 2 cut(s) | 158, 1026 |
| Bst2UI | CCWGG | 1 cut(s) | 290 |
| Bst4CI | ACNGT | 1 cut(s) | 328 |
| Bst6I | CTCTTC | 1 cut(s) | 967 |
| BstACI | GRCGYC | 2 cut(s) | 158, 1026 |
| BstAFI | CTTAAG | 1 cut(s) | 890 |
| BstC8I | GCNNGC | 3 cut(s) | 152, 266, 336 |
| BstDEI | CTNAG | 4 cut(s) | 367, 693, 1038, 1086 |
| BstDSI | CCRYGG | 1 cut(s) | 813 |
| BstF5I | GGATG | 4 cut(s) | 393, 421, 728, 783 |
| BstH2I | RGCGCY | 1 cut(s) | 1029 |
| BstHHI | GCGC | 2 cut(s) | 854, 1028 |
| BstKTI | GATC | 8 cut(s) | 145, 230, 568, 630, 729, 812, 1222, 1231 |
| BstMAI | GTCTC | 1 cut(s) | 475 |
| BstMBI | GATC | 8 cut(s) | 142, 227, 565, 627, 726, 809, 1219, 1228 |
| BstMCI | CGRYCG | 1 cut(s) | 279 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 220, 239, 258, 371, 1064, 1175, 1196 |
| BstNI | CCWGG | 1 cut(s) | 290 |
| BstSCI | CCNGG | 2 cut(s) | 288, 312 |
| BstSFI | CTRYAG | 2 cut(s) | 167, 717 |
| BstSLI | GKGCMC | 1 cut(s) | 1135 |
| BstV1I | GCAGC | 5 cut(s) | 23, 181, 201, 273, 374 |
| BstV2I | GAAGAC | 4 cut(s) | 64, 96, 456, 659 |
| BstX2I | RGATCY | 3 cut(s) | 227, 565, 809 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1022 |
| BstYI | RGATCY | 3 cut(s) | 227, 565, 809 |
| BstZI | CGGCCG | 1 cut(s) | 276 |
| Bsu15I | ATCGAT | 1 cut(s) | 708 |
| BsuI | GTATCC | 1 cut(s) | 889 |
| BsuRI | GGCC | 4 cut(s) | 78, 103, 278, 1014 |
| BsuTUI | ATCGAT | 1 cut(s) | 708 |
| BtgI | CCRYGG | 1 cut(s) | 813 |
| BtgZI | GCGATG | 1 cut(s) | 653 |
| BtrI | CACGTC | 3 cut(s) | 181, 256, 319 |
| BtsCI | GGATG | 4 cut(s) | 393, 421, 728, 783 |
| BtsIMutI | CAGTG | 2 cut(s) | 138, 765 |
| Cac8I | GCNNGC | 3 cut(s) | 152, 266, 336 |
| CciI | TCATGA | 1 cut(s) | 1222 |
| CfoI | GCGC | 2 cut(s) | 854, 1028 |
| Cfr13I | GGNCC | 2 cut(s) | 77, 102 |
| ClaI | ATCGAT | 1 cut(s) | 708 |
| CseI | GACGC | 3 cut(s) | 175, 206, 1064 |
| Csp6I | GTAC | 1 cut(s) | 430 |
| CviAII | CATG | 3 cut(s) | 776, 1016, 1223 |
| CviQI | GTAC | 1 cut(s) | 430 |
| DdeI | CTNAG | 4 cut(s) | 367, 693, 1038, 1086 |
| DinI | GGCGCC | 1 cut(s) | 1027 |
| DpnI | GATC | 8 cut(s) | 144, 229, 567, 629, 728, 811, 1221, 1230 |
| DpnII | GATC | 8 cut(s) | 142, 227, 565, 627, 726, 809, 1219, 1228 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 254 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 254 |
| EaeI | YGGCCR | 2 cut(s) | 276, 1012 |
| EagI | CGGCCG | 1 cut(s) | 276 |
| Eam1104I | CTCTTC | 1 cut(s) | 967 |
| EarI | CTCTTC | 1 cut(s) | 967 |
| EciI | GGCGGA | 1 cut(s) | 220 |
| Ecl136II | GAGCTC | 1 cut(s) | 745 |
| EclXI | CGGCCG | 1 cut(s) | 276 |
| Eco24I | GRGCYC | 1 cut(s) | 747 |
| Eco31I | GGTCTC | 1 cut(s) | 475 |
| Eco52I | CGGCCG | 1 cut(s) | 276 |
| Eco53kI | GAGCTC | 1 cut(s) | 745 |
| Eco57I | CTGAAG | 1 cut(s) | 222 |
| EcoICRI | GAGCTC | 1 cut(s) | 745 |
| EcoRI | GAATTC | 1 cut(s) | 611 |
| EcoRII | CCWGG | 1 cut(s) | 288 |
| EcoT38I | GRGCYC | 1 cut(s) | 747 |
| EgeI | GGCGCC | 1 cut(s) | 1027 |
| EheI | GGCGCC | 1 cut(s) | 1027 |
| FaeI | CATG | 3 cut(s) | 779, 1019, 1226 |
| FatI | CATG | 3 cut(s) | 775, 1015, 1222 |
| FauNDI | CATATG | 1 cut(s) | 411 |
| Fnu4HI | GCNGC | 6 cut(s) | 12, 170, 215, 262, 363, 855 |
| FokI | GGATG | 4 cut(s) | 380, 428, 735, 770 |
| FriOI | GRGCYC | 1 cut(s) | 747 |
| Fsp4HI | GCNGC | 6 cut(s) | 12, 170, 215, 262, 363, 855 |
| FspBI | CTAG | 4 cut(s) | 146, 309, 521, 1235 |
| GlaI | GCGC | 2 cut(s) | 853, 1027 |
| GluI | GCNGC | 6 cut(s) | 12, 170, 215, 262, 363, 855 |
| GsuI | CTGGAG | 1 cut(s) | 410 |
| HaeII | RGCGCY | 1 cut(s) | 1029 |
| HaeIII | GGCC | 4 cut(s) | 78, 103, 278, 1014 |
| HapII | CCGG | 1 cut(s) | 314 |
| HgaI | GACGC | 3 cut(s) | 175, 206, 1064 |
| HhaI | GCGC | 2 cut(s) | 854, 1028 |
| Hin1I | GRCGYC | 2 cut(s) | 158, 1026 |
| Hin1II | CATG | 3 cut(s) | 779, 1019, 1226 |
| Hin6I | GCGC | 2 cut(s) | 852, 1026 |
| HinP1I | GCGC | 2 cut(s) | 852, 1026 |
| HincII | GTYRAC | 2 cut(s) | 50, 980 |
| HindII | GTYRAC | 2 cut(s) | 50, 980 |
| HindIII | AAGCTT | 1 cut(s) | 342 |
| HpaII | CCGG | 1 cut(s) | 314 |
| HphI | GGTGA | 3 cut(s) | 190, 394, 1156 |
| Hpy166II | GTNNAC | 3 cut(s) | 50, 190, 980 |
| Hpy188I | TCNGA | 3 cut(s) | 565, 583, 1087 |
| Hpy188III | TCNNGA | 8 cut(s) | 302, 515, 569, 833, 903, 1107, 1223, 1235 |
| Hpy8I | GTNNAC | 3 cut(s) | 50, 190, 980 |
| HpyAV | CCTTC | 5 cut(s) | 44, 453, 551, 676, 932 |
| HpyCH4III | ACNGT | 1 cut(s) | 328 |
| HpyCH4IV | ACGT | 6 cut(s) | 158, 180, 255, 318, 495, 982 |
| HpyCH4V | TGCA | 5 cut(s) | 128, 169, 680, 719, 870 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 220, 239, 258, 371, 1064, 1175, 1196 |
| HpyF3I | CTNAG | 4 cut(s) | 367, 693, 1038, 1086 |
| HpySE526I | ACGT | 6 cut(s) | 158, 180, 255, 318, 495, 982 |
| Hsp92I | GRCGYC | 2 cut(s) | 158, 1026 |
| Hsp92II | CATG | 3 cut(s) | 779, 1019, 1226 |
| HspAI | GCGC | 2 cut(s) | 852, 1026 |
| KasI | GGCGCC | 1 cut(s) | 1025 |
| Kzo9I | GATC | 8 cut(s) | 142, 227, 565, 627, 726, 809, 1219, 1228 |
| LmnI | GCTCC | 1 cut(s) | 429 |
| Lsp1109I | GCAGC | 5 cut(s) | 23, 181, 201, 273, 374 |
| LweI | GCATC | 1 cut(s) | 625 |
| MaeI | CTAG | 4 cut(s) | 146, 309, 521, 1235 |
| MaeII | ACGT | 6 cut(s) | 158, 180, 255, 318, 495, 982 |
| MaeIII | GTNAC | 5 cut(s) | 500, 712, 763, 941, 1162 |
| MalI | GATC | 8 cut(s) | 144, 229, 567, 629, 728, 811, 1221, 1230 |
| MboI | GATC | 8 cut(s) | 142, 227, 565, 627, 726, 809, 1219, 1228 |
| MflI | RGATCY | 3 cut(s) | 227, 565, 809 |
| MhlI | GDGCHC | 2 cut(s) | 747, 1135 |
| MlsI | TGGCCA | 1 cut(s) | 1014 |
| MluCI | AATT | 4 cut(s) | 611, 802, 841, 1158 |
| MluNI | TGGCCA | 1 cut(s) | 1014 |
| Mly113I | GGCGCC | 1 cut(s) | 1026 |
| MlyI | GAGTC | 5 cut(s) | 497, 649, 668, 1051, 1091 |
| MnlI | CCTC | 7 cut(s) | 132, 364, 968, 988, 992, 1018, 1080 |
| Mox20I | TGGCCA | 1 cut(s) | 1014 |
| MroXI | GAANNNNTTC | 2 cut(s) | 486, 588 |
| MscI | TGGCCA | 1 cut(s) | 1014 |
| MseI | TTAA | 4 cut(s) | 597, 605, 885, 891 |
| MslI | CAYNNNNRTG | 5 cut(s) | 398, 414, 788, 1020, 1050 |
| Msp20I | TGGCCA | 1 cut(s) | 1014 |
| MspCI | CTTAAG | 1 cut(s) | 890 |
| MspI | CCGG | 1 cut(s) | 314 |
| MspR9I | CCNGG | 2 cut(s) | 290, 314 |
| MvaI | CCWGG | 1 cut(s) | 290 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 220, 239, 258, 371, 1064, 1175, 1196 |
| NarI | GGCGCC | 1 cut(s) | 1026 |
| NciI | CCSGG | 1 cut(s) | 314 |
| NdeI | CATATG | 1 cut(s) | 411 |
| NdeII | GATC | 8 cut(s) | 142, 227, 565, 627, 726, 809, 1219, 1228 |
| NlaIII | CATG | 3 cut(s) | 779, 1019, 1226 |
| NlaIV | GGNNCC | 2 cut(s) | 968, 1027 |
| NmuCI | GTSAC | 3 cut(s) | 500, 763, 1162 |
| PagI | TCATGA | 1 cut(s) | 1222 |
| PdmI | GAANNNNTTC | 2 cut(s) | 486, 588 |
| PfeI | GAWTC | 6 cut(s) | 285, 298, 419, 705, 836, 1118 |
| PfoI | TCCNGGA | 1 cut(s) | 288 |
| PkrI | GCNGC | 6 cut(s) | 13, 171, 216, 263, 364, 856 |
| PleI | GAGTC | 5 cut(s) | 497, 649, 668, 1050, 1090 |
| PluTI | GGCGCC | 1 cut(s) | 1029 |
| PpsI | GAGTC | 5 cut(s) | 497, 649, 668, 1050, 1090 |
| Psp124BI | GAGCTC | 1 cut(s) | 747 |
| Psp6I | CCWGG | 1 cut(s) | 288 |
| PspGI | CCWGG | 1 cut(s) | 288 |
| PspN4I | GGNNCC | 2 cut(s) | 968, 1027 |
| PspPI | GGNCC | 2 cut(s) | 77, 102 |
| PstI | CTGCAG | 2 cut(s) | 171, 721 |
| PsuI | RGATCY | 3 cut(s) | 227, 565, 809 |
| RsaI | GTAC | 1 cut(s) | 431 |
| RsaNI | GTAC | 1 cut(s) | 430 |
| RseI | CAYNNNNRTG | 5 cut(s) | 398, 414, 788, 1020, 1050 |
| SacI | GAGCTC | 1 cut(s) | 747 |
| SaqAI | TTAA | 4 cut(s) | 597, 605, 885, 891 |
| SatI | GCNGC | 6 cut(s) | 12, 170, 215, 262, 363, 855 |
| Sau3AI | GATC | 8 cut(s) | 142, 227, 565, 627, 726, 809, 1219, 1228 |
| Sau96I | GGNCC | 2 cut(s) | 77, 102 |
| SchI | GAGTC | 5 cut(s) | 497, 649, 668, 1051, 1091 |
| ScrFI | CCNGG | 2 cut(s) | 290, 314 |
| SduI | GDGCHC | 2 cut(s) | 747, 1135 |
| SfaNI | GCATC | 1 cut(s) | 625 |
| SfcI | CTRYAG | 2 cut(s) | 167, 717 |
| SfoI | GGCGCC | 1 cut(s) | 1027 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 398, 414, 788, 1020, 1050 |
| SmlI | CTYRAG | 3 cut(s) | 302, 339, 890 |
| SmoI | CTYRAG | 3 cut(s) | 302, 339, 890 |
| Sse9I | AATT | 4 cut(s) | 611, 802, 841, 1158 |
| SsiI | CCGC | 3 cut(s) | 231, 855, 1167 |
| SspDI | GGCGCC | 1 cut(s) | 1025 |
| SspMI | CTAG | 4 cut(s) | 146, 309, 521, 1235 |
| SstI | GAGCTC | 1 cut(s) | 747 |
| StyD4I | CCNGG | 2 cut(s) | 288, 312 |
| TaaI | ACNGT | 1 cut(s) | 328 |
| TaiI | ACGT | 6 cut(s) | 161, 183, 258, 321, 498, 985 |
| TaqI | TCGA | 3 cut(s) | 703, 708, 1108 |
| TasI | AATT | 4 cut(s) | 611, 802, 841, 1158 |
| TauI | GCSGC | 1 cut(s) | 857 |
| TfiI | GAWTC | 6 cut(s) | 285, 298, 419, 705, 836, 1118 |
| Tru1I | TTAA | 4 cut(s) | 597, 605, 885, 891 |
| Tru9I | TTAA | 4 cut(s) | 597, 605, 885, 891 |
| TscAI | CASTG | 2 cut(s) | 145, 772 |
| TseFI | GTSAC | 3 cut(s) | 500, 763, 1162 |
| TseI | GCWGC | 5 cut(s) | 11, 169, 214, 261, 362 |
| Tsp45I | GTSAC | 3 cut(s) | 500, 763, 1162 |
| TspDTI | ATGAA | 5 cut(s) | 455, 459, 773, 906, 1239 |
| TspGWI | ACGGA | 1 cut(s) | 802 |
| TspRI | CASTG | 2 cut(s) | 145, 772 |
| Vha464I | CTTAAG | 1 cut(s) | 890 |
| XapI | RAATTY | 1 cut(s) | 611 |
| XbaI | TCTAGA | 1 cut(s) | 1234 |
| XmnI | GAANNNNTTC | 2 cut(s) | 486, 588 |
| XspI | CTAG | 4 cut(s) | 146, 309, 521, 1235 |
| ZraI | GACGTC | 1 cut(s) | 159 |