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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 441, 486 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 549 |
| AccB1I | GGYRCC | 3 cut(s) | 647, 668, 689 |
| AciI | CCGC | 2 cut(s) | 148, 596 |
| AclWI | GGATC | 1 cut(s) | 374 |
| AcuI | CTGAAG | 1 cut(s) | 369 |
| AcvI | CACGTG | 1 cut(s) | 605 |
| AcyI | GRCGYC | 2 cut(s) | 46, 648 |
| AdeI | CACNNNGTG | 2 cut(s) | 608, 719 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 249, 500, 501, 571, 624, 703 |
| AflIII | ACRYGT | 3 cut(s) | 602, 620, 753 |
| AgsI | TTSAA | 5 cut(s) | 140, 163, 170, 199, 447 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 111, 143, 342, 374 |
| AluBI | AGCT | 4 cut(s) | 103, 227, 283, 407 |
| AluI | AGCT | 4 cut(s) | 103, 227, 283, 407 |
| Alw26I | GTCTC | 1 cut(s) | 37 |
| AlwI | GGATC | 1 cut(s) | 374 |
| AoxI | GGCC | 1 cut(s) | 449 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 228 |
| AspA2I | CCTAGG | 1 cut(s) | 701 |
| AspLEI | GCGC | 4 cut(s) | 186, 507, 650, 724 |
| AspS9I | GGNCC | 2 cut(s) | 450, 551 |
| AvaII | GGWCC | 1 cut(s) | 551 |
| AvrII | CCTAGG | 1 cut(s) | 701 |
| BanI | GGYRCC | 3 cut(s) | 647, 668, 689 |
| BauI | CACGAG | 2 cut(s) | 370, 428 |
| BbrPI | CACGTG | 1 cut(s) | 605 |
| BciVI | GTATCC | 1 cut(s) | 592 |
| BcoDI | GTCTC | 1 cut(s) | 37 |
| BfaI | CTAG | 2 cut(s) | 116, 702 |
| BfmI | CTRYAG | 2 cut(s) | 402, 583 |
| BfoI | RGCGCY | 1 cut(s) | 651 |
| BfuI | GTATCC | 1 cut(s) | 592 |
| BlnI | CCTAGG | 1 cut(s) | 701 |
| Bme18I | GGWCC | 1 cut(s) | 551 |
| BmgT120I | GGNCC | 2 cut(s) | 450, 551 |
| BmiI | GGNNCC | 4 cut(s) | 552, 649, 670, 691 |
| BmsI | GCATC | 1 cut(s) | 82 |
| BpuEI | CTTGAG | 1 cut(s) | 9 |
| BsaAI | YACGTR | 1 cut(s) | 605 |
| BsaHI | GRCGYC | 2 cut(s) | 46, 648 |
| BsaJI | CCNNGG | 3 cut(s) | 651, 672, 701 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 65, 95, 619, 649, 682, 712 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 249, 500, 501, 571, 624, 703 |
| Bse3DI | GCAATG | 2 cut(s) | 139, 619 |
| BseDI | CCNNGG | 3 cut(s) | 651, 672, 701 |
| BseGI | GGATG | 1 cut(s) | 97 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 249, 500, 501, 571, 624, 703 |
| BseMI | GCAATG | 2 cut(s) | 139, 619 |
| BseMII | CTCAG | 3 cut(s) | 79, 399, 740 |
| BshFI | GGCC | 1 cut(s) | 451 |
| BshNI | GGYRCC | 3 cut(s) | 647, 668, 689 |
| BslFI | GGGAC | 1 cut(s) | 555 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 249, 500, 501, 571, 624, 703 |
| BsmAI | GTCTC | 1 cut(s) | 37 |
| BsmBI | CGTCTC | 1 cut(s) | 37 |
| BsmFI | GGGAC | 1 cut(s) | 555 |
| BsmI | GAATGC | 2 cut(s) | 468, 713 |
| BsnI | GGCC | 1 cut(s) | 451 |
| Bsp143I | GATC | 2 cut(s) | 84, 366 |
| Bsp19I | CCATGG | 2 cut(s) | 651, 672 |
| BspACI | CCGC | 2 cut(s) | 148, 596 |
| BspANI | GGCC | 1 cut(s) | 451 |
| BspCNI | CTCAG | 3 cut(s) | 78, 400, 739 |
| BspHI | TCATGA | 1 cut(s) | 472 |
| BspLI | GGNNCC | 4 cut(s) | 552, 649, 670, 691 |
| BspPI | GGATC | 1 cut(s) | 374 |
| BspQI | GCTCTTC | 2 cut(s) | 114, 234 |
| BspT107I | GGYRCC | 3 cut(s) | 647, 668, 689 |
| BsrDI | GCAATG | 2 cut(s) | 139, 619 |
| BssECI | CCNNGG | 3 cut(s) | 651, 672, 701 |
| BssMI | GATC | 2 cut(s) | 84, 366 |
| BssNI | GRCGYC | 2 cut(s) | 46, 648 |
| BssSI | CACGAG | 2 cut(s) | 370, 428 |
| BssT1I | CCWWGG | 3 cut(s) | 651, 672, 701 |
| Bst2BI | CACGAG | 2 cut(s) | 370, 428 |
| Bst4CI | ACNGT | 1 cut(s) | 584 |
| Bst6I | CTCTTC | 2 cut(s) | 114, 234 |
| BstACI | GRCGYC | 2 cut(s) | 46, 648 |
| BstBAI | YACGTR | 1 cut(s) | 605 |
| BstC8I | GCNNGC | 1 cut(s) | 21 |
| BstDEI | CTNAG | 4 cut(s) | 65, 408, 522, 726 |
| BstDSI | CCRYGG | 2 cut(s) | 651, 672 |
| BstF5I | GGATG | 1 cut(s) | 97 |
| BstH2I | RGCGCY | 1 cut(s) | 651 |
| BstHHI | GCGC | 4 cut(s) | 186, 507, 650, 724 |
| BstKTI | GATC | 2 cut(s) | 87, 369 |
| BstMAI | GTCTC | 1 cut(s) | 37 |
| BstMBI | GATC | 2 cut(s) | 84, 366 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 511 |
| BstNSI | RCATGY | 3 cut(s) | 23, 624, 757 |
| BstSFI | CTRYAG | 2 cut(s) | 402, 583 |
| BsuI | GTATCC | 1 cut(s) | 592 |
| BsuRI | GGCC | 1 cut(s) | 451 |
| BtgI | CCRYGG | 2 cut(s) | 651, 672 |
| BtsCI | GGATG | 1 cut(s) | 97 |
| BtsIMutI | CAGTG | 1 cut(s) | 345 |
| Cac8I | GCNNGC | 1 cut(s) | 21 |
| CciI | TCATGA | 1 cut(s) | 472 |
| CfoI | GCGC | 4 cut(s) | 186, 507, 650, 724 |
| Cfr13I | GGNCC | 2 cut(s) | 450, 551 |
| CseI | GACGC | 1 cut(s) | 54 |
| CviAII | CATG | 9 cut(s) | 20, 244, 416, 473, 621, 652, 659, 673, 754 |
| CviJI | RGCY | 7 cut(s) | 103, 227, 283, 320, 407, 451, 656 |
| CviKI_1 | RGCY | 7 cut(s) | 103, 227, 283, 320, 407, 451, 656 |
| DdeI | CTNAG | 4 cut(s) | 65, 408, 522, 726 |
| DinI | GGCGCC | 1 cut(s) | 649 |
| DpnI | GATC | 2 cut(s) | 86, 368 |
| DpnII | GATC | 2 cut(s) | 84, 366 |
| DraIII | CACNNNGTG | 2 cut(s) | 608, 719 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 549 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 549 |
| Eam1104I | CTCTTC | 2 cut(s) | 114, 234 |
| EarI | CTCTTC | 2 cut(s) | 114, 234 |
| Eco130I | CCWWGG | 3 cut(s) | 651, 672, 701 |
| Eco47I | GGWCC | 1 cut(s) | 551 |
| Eco57I | CTGAAG | 1 cut(s) | 369 |
| Eco72I | CACGTG | 1 cut(s) | 605 |
| EcoT14I | CCWWGG | 3 cut(s) | 651, 672, 701 |
| EgeI | GGCGCC | 1 cut(s) | 649 |
| EheI | GGCGCC | 1 cut(s) | 649 |
| ErhI | CCWWGG | 3 cut(s) | 651, 672, 701 |
| Esp3I | CGTCTC | 1 cut(s) | 37 |
| FaeI | CATG | 9 cut(s) | 23, 247, 419, 476, 624, 655, 662, 676, 757 |
| FaqI | GGGAC | 1 cut(s) | 555 |
| FatI | CATG | 9 cut(s) | 19, 243, 415, 472, 620, 651, 658, 672, 753 |
| FauI | CCCGC | 1 cut(s) | 155 |
| FauNDI | CATATG | 2 cut(s) | 51, 546 |
| FokI | GGATG | 1 cut(s) | 104 |
| FspBI | CTAG | 2 cut(s) | 116, 702 |
| GlaI | GCGC | 4 cut(s) | 185, 506, 649, 723 |
| HaeII | RGCGCY | 1 cut(s) | 651 |
| HaeIII | GGCC | 1 cut(s) | 451 |
| HgaI | GACGC | 1 cut(s) | 54 |
| HhaI | GCGC | 4 cut(s) | 186, 507, 650, 724 |
| Hin1I | GRCGYC | 2 cut(s) | 46, 648 |
| Hin1II | CATG | 9 cut(s) | 23, 247, 419, 476, 624, 655, 662, 676, 757 |
| Hin6I | GCGC | 4 cut(s) | 184, 505, 648, 722 |
| HinP1I | GCGC | 4 cut(s) | 184, 505, 648, 722 |
| HinfI | GANTC | 1 cut(s) | 143 |
| Hpy166II | GTNNAC | 1 cut(s) | 260 |
| Hpy188I | TCNGA | 2 cut(s) | 68, 223 |
| Hpy188III | TCNNGA | 5 cut(s) | 37, 140, 370, 430, 473 |
| Hpy8I | GTNNAC | 1 cut(s) | 260 |
| HpyAV | CCTTC | 3 cut(s) | 157, 316, 569 |
| HpyCH4III | ACNGT | 1 cut(s) | 584 |
| HpyCH4IV | ACGT | 2 cut(s) | 604, 718 |
| HpyCH4V | TGCA | 2 cut(s) | 95, 491 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 511 |
| HpyF3I | CTNAG | 4 cut(s) | 65, 408, 522, 726 |
| HpySE526I | ACGT | 2 cut(s) | 604, 718 |
| Hsp92I | GRCGYC | 2 cut(s) | 46, 648 |
| Hsp92II | CATG | 9 cut(s) | 23, 247, 419, 476, 624, 655, 662, 676, 757 |
| HspAI | GCGC | 4 cut(s) | 184, 505, 648, 722 |
| KasI | GGCGCC | 1 cut(s) | 647 |
| Kzo9I | GATC | 2 cut(s) | 84, 366 |
| LguI | GCTCTTC | 2 cut(s) | 114, 234 |
| LmnI | GCTCC | 1 cut(s) | 511 |
| LpnPI | CCDG | 1 cut(s) | 168 |
| LweI | GCATC | 1 cut(s) | 82 |
| MaeI | CTAG | 2 cut(s) | 116, 702 |
| MaeII | ACGT | 2 cut(s) | 604, 718 |
| MalI | GATC | 2 cut(s) | 86, 368 |
| MboI | GATC | 2 cut(s) | 84, 366 |
| MboII | GAAGA | 2 cut(s) | 131, 221 |
| MluCI | AATT | 5 cut(s) | 217, 285, 436, 442, 481 |
| Mly113I | GGCGCC | 1 cut(s) | 648 |
| MmeI | TCCRAC | 1 cut(s) | 340 |
| MroXI | GAANNNNTTC | 1 cut(s) | 228 |
| MseI | TTAA | 2 cut(s) | 480, 731 |
| MslI | CAYNNNNRTG | 1 cut(s) | 428 |
| Mva1269I | GAATGC | 2 cut(s) | 468, 713 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 511 |
| NarI | GGCGCC | 1 cut(s) | 648 |
| NcoI | CCATGG | 2 cut(s) | 651, 672 |
| NdeI | CATATG | 2 cut(s) | 51, 546 |
| NdeII | GATC | 2 cut(s) | 84, 366 |
| NlaIII | CATG | 9 cut(s) | 23, 247, 419, 476, 624, 655, 662, 676, 757 |
| NlaIV | GGNNCC | 4 cut(s) | 552, 649, 670, 691 |
| NspI | RCATGY | 3 cut(s) | 23, 624, 757 |
| PaeI | GCATGC | 1 cut(s) | 23 |
| PagI | TCATGA | 1 cut(s) | 472 |
| PciI | ACATGT | 2 cut(s) | 620, 753 |
| PciSI | GCTCTTC | 2 cut(s) | 114, 234 |
| PctI | GAATGC | 2 cut(s) | 468, 713 |
| PdmI | GAANNNNTTC | 1 cut(s) | 228 |
| PfeI | GAWTC | 1 cut(s) | 143 |
| PluTI | GGCGCC | 1 cut(s) | 651 |
| PmaCI | CACGTG | 1 cut(s) | 605 |
| PmlI | CACGTG | 1 cut(s) | 605 |
| Ppu21I | YACGTR | 1 cut(s) | 605 |
| PscI | ACATGT | 2 cut(s) | 620, 753 |
| PsiI | TTATAA | 2 cut(s) | 441, 486 |
| PspCI | CACGTG | 1 cut(s) | 605 |
| PspN4I | GGNNCC | 4 cut(s) | 552, 649, 670, 691 |
| PspPI | GGNCC | 2 cut(s) | 450, 551 |
| RseI | CAYNNNNRTG | 1 cut(s) | 428 |
| SapI | GCTCTTC | 2 cut(s) | 114, 234 |
| SaqAI | TTAA | 2 cut(s) | 480, 731 |
| Sau3AI | GATC | 2 cut(s) | 84, 366 |
| Sau96I | GGNCC | 2 cut(s) | 450, 551 |
| SfaNI | GCATC | 1 cut(s) | 82 |
| SfcI | CTRYAG | 2 cut(s) | 402, 583 |
| SfoI | GGCGCC | 1 cut(s) | 649 |
| SinI | GGWCC | 1 cut(s) | 551 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 428 |
| SmlI | CTYRAG | 1 cut(s) | 24 |
| SmoI | CTYRAG | 1 cut(s) | 24 |
| SphI | GCATGC | 1 cut(s) | 23 |
| Sse9I | AATT | 5 cut(s) | 217, 285, 436, 442, 481 |
| SsiI | CCGC | 2 cut(s) | 148, 596 |
| SspDI | GGCGCC | 1 cut(s) | 647 |
| SspMI | CTAG | 2 cut(s) | 116, 702 |
| StyI | CCWWGG | 3 cut(s) | 651, 672, 701 |
| TaaI | ACNGT | 1 cut(s) | 584 |
| TaiI | ACGT | 2 cut(s) | 607, 721 |
| TaqI | TCGA | 1 cut(s) | 83 |
| TasI | AATT | 5 cut(s) | 217, 285, 436, 442, 481 |
| TfiI | GAWTC | 1 cut(s) | 143 |
| Tru1I | TTAA | 2 cut(s) | 480, 731 |
| Tru9I | TTAA | 2 cut(s) | 480, 731 |
| TscAI | CASTG | 1 cut(s) | 352 |
| TspDTI | ATGAA | 1 cut(s) | 461 |
| TspGWI | ACGGA | 1 cut(s) | 379 |
| TspRI | CASTG | 1 cut(s) | 352 |
| VpaK11BI | GGWCC | 1 cut(s) | 551 |
| XceI | RCATGY | 3 cut(s) | 23, 624, 757 |
| XmaJI | CCTAGG | 1 cut(s) | 701 |
| XmnI | GAANNNNTTC | 1 cut(s) | 228 |
| XspI | CTAG | 2 cut(s) | 116, 702 |