gag-polypeptide of LTR copia-type
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 803 |
| AciI | CCGC | 2 cut(s) | 38, 348 |
| AclI | AACGTT | 1 cut(s) | 138 |
| AclWI | GGATC | 3 cut(s) | 661, 673, 674 |
| AcoI | YGGCCR | 3 cut(s) | 98, 269, 442 |
| AcsI | RAATTY | 1 cut(s) | 492 |
| AfaI | GTAC | 5 cut(s) | 511, 676, 702, 706, 818 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 96, 149, 226, 451, 486, 628, 826 |
| AflII | CTTAAG | 1 cut(s) | 653 |
| AflIII | ACRYGT | 1 cut(s) | 395 |
| AgsI | TTSAA | 4 cut(s) | 19, 156, 287, 731 |
| AjiI | CACGTC | 2 cut(s) | 365, 405 |
| AjnI | CCWGG | 1 cut(s) | 61 |
| AluBI | AGCT | 6 cut(s) | 504, 521, 588, 719, 743, 764 |
| AluI | AGCT | 6 cut(s) | 504, 521, 588, 719, 743, 764 |
| Alw26I | GTCTC | 1 cut(s) | 596 |
| AlwI | GGATC | 3 cut(s) | 661, 673, 674 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 614 |
| AoxI | GGCC | 4 cut(s) | 98, 249, 269, 442 |
| ApeKI | GCWGC | 5 cut(s) | 179, 199, 518, 719, 722 |
| ApoI | RAATTY | 1 cut(s) | 492 |
| AspLEI | GCGC | 3 cut(s) | 614, 645, 805 |
| AspS9I | GGNCC | 1 cut(s) | 631 |
| AsuC2I | CCSGG | 2 cut(s) | 150, 221 |
| AsuHPI | GGTGA | 1 cut(s) | 159 |
| AvaII | GGWCC | 1 cut(s) | 631 |
| BaeGI | GKGCMC | 1 cut(s) | 12 |
| BamHI | GGATCC | 1 cut(s) | 666 |
| BbsI | GAAGAC | 1 cut(s) | 837 |
| BbvCI | CCTCAGC | 1 cut(s) | 33 |
| BbvI | GCAGC | 5 cut(s) | 191, 211, 530, 706, 709 |
| BccI | CCATC | 4 cut(s) | 93, 561, 656, 779 |
| BciT130I | CCWGG | 1 cut(s) | 63 |
| BciVI | GTATCC | 1 cut(s) | 611 |
| BcnI | CCSGG | 2 cut(s) | 150, 221 |
| BcoDI | GTCTC | 1 cut(s) | 596 |
| BfaI | CTAG | 3 cut(s) | 117, 599, 859 |
| BfmI | CTRYAG | 4 cut(s) | 177, 197, 505, 522 |
| BfoI | RGCGCY | 1 cut(s) | 615 |
| BfrI | CTTAAG | 1 cut(s) | 653 |
| BfuI | GTATCC | 1 cut(s) | 611 |
| BglII | AGATCT | 1 cut(s) | 51 |
| BisI | GCNGC | 7 cut(s) | 38, 180, 200, 348, 519, 720, 723 |
| BlsI | GCNGC | 7 cut(s) | 39, 181, 201, 349, 520, 721, 724 |
| BmcAI | AGTACT | 1 cut(s) | 511 |
| Bme1390I | CCNGG | 3 cut(s) | 63, 150, 221 |
| Bme18I | GGWCC | 1 cut(s) | 631 |
| BmgBI | CACGTC | 2 cut(s) | 365, 405 |
| BmgT120I | GGNCC | 1 cut(s) | 631 |
| BmiI | GGNNCC | 3 cut(s) | 225, 632, 668 |
| BmrFI | CCNGG | 3 cut(s) | 63, 150, 221 |
| BmsI | GCATC | 2 cut(s) | 390, 658 |
| BpiI | GAAGAC | 1 cut(s) | 837 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 577, 609 |
| BpmI | CTGGAG | 1 cut(s) | 45 |
| Bpu10I | CCTNAGC | 1 cut(s) | 33 |
| BpuMI | CCSGG | 2 cut(s) | 150, 221 |
| BsaAI | YACGTR | 1 cut(s) | 704 |
| BsaWI | WCCGGW | 4 cut(s) | 123, 226, 241, 497 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 177, 207 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 96, 149, 226, 451, 486, 628, 826 |
| Bse118I | RCCGGY | 6 cut(s) | 75, 96, 267, 295, 414, 428 |
| Bse1I | ACTGG | 1 cut(s) | 385 |
| BseBI | CCWGG | 1 cut(s) | 63 |
| BseGI | GGATG | 5 cut(s) | 85, 259, 381, 570, 774 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 96, 149, 226, 451, 486, 628, 826 |
| BseMII | CTCAG | 2 cut(s) | 47, 662 |
| BseNI | ACTGG | 1 cut(s) | 385 |
| BseRI | GAGGAG | 1 cut(s) | 699 |
| BseSI | GKGCMC | 1 cut(s) | 12 |
| BseX3I | CGGCCG | 1 cut(s) | 98 |
| BseXI | GCAGC | 5 cut(s) | 191, 211, 530, 706, 709 |
| Bsh1236I | CGCG | 1 cut(s) | 803 |
| Bsh1285I | CGRYCG | 1 cut(s) | 101 |
| BshFI | GGCC | 4 cut(s) | 100, 251, 271, 444 |
| BsiEI | CGRYCG | 1 cut(s) | 101 |
| BsiWI | CGTACG | 1 cut(s) | 700 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 96, 149, 226, 451, 486, 628, 826 |
| BsmAI | GTCTC | 1 cut(s) | 596 |
| BsnI | GGCC | 4 cut(s) | 100, 251, 271, 444 |
| Bsp1286I | GDGCHC | 1 cut(s) | 12 |
| Bsp143I | GATC | 3 cut(s) | 51, 666, 678 |
| BspACI | CCGC | 2 cut(s) | 38, 348 |
| BspANI | GGCC | 4 cut(s) | 100, 251, 271, 444 |
| BspCNI | CTCAG | 2 cut(s) | 46, 663 |
| BspFNI | CGCG | 1 cut(s) | 803 |
| BspHI | TCATGA | 1 cut(s) | 780 |
| BspLI | GGNNCC | 3 cut(s) | 225, 632, 668 |
| BspMAI | CTGCAG | 2 cut(s) | 181, 201 |
| BspPI | GGATC | 3 cut(s) | 661, 673, 674 |
| BspTI | CTTAAG | 1 cut(s) | 653 |
| BsrFI | RCCGGY | 6 cut(s) | 75, 96, 267, 295, 414, 428 |
| BsrI | ACTGG | 1 cut(s) | 385 |
| BssAI | RCCGGY | 6 cut(s) | 75, 96, 267, 295, 414, 428 |
| BssMI | GATC | 3 cut(s) | 51, 666, 678 |
| Bst2UI | CCWGG | 1 cut(s) | 63 |
| Bst4CI | ACNGT | 2 cut(s) | 509, 526 |
| Bst6I | CTCTTC | 1 cut(s) | 273 |
| BstAFI | CTTAAG | 1 cut(s) | 653 |
| BstBAI | YACGTR | 1 cut(s) | 704 |
| BstC8I | GCNNGC | 5 cut(s) | 12, 379, 412, 430, 647 |
| BstDEI | CTNAG | 2 cut(s) | 33, 671 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 824 |
| BstF5I | GGATG | 5 cut(s) | 85, 259, 381, 570, 774 |
| BstFNI | CGCG | 1 cut(s) | 803 |
| BstH2I | RGCGCY | 1 cut(s) | 615 |
| BstHHI | GCGC | 3 cut(s) | 614, 645, 805 |
| BstKTI | GATC | 3 cut(s) | 54, 669, 681 |
| BstMAI | GTCTC | 1 cut(s) | 596 |
| BstMBI | GATC | 3 cut(s) | 51, 666, 678 |
| BstMCI | CGRYCG | 1 cut(s) | 101 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 347, 353, 367, 398, 407, 731, 740, 761 |
| BstNI | CCWGG | 1 cut(s) | 63 |
| BstNSI | RCATGY | 1 cut(s) | 399 |
| BstSCI | CCNGG | 3 cut(s) | 61, 148, 219 |
| BstSFI | CTRYAG | 4 cut(s) | 177, 197, 505, 522 |
| BstSLI | GKGCMC | 1 cut(s) | 12 |
| BstSNI | TACGTA | 1 cut(s) | 704 |
| BstUI | CGCG | 1 cut(s) | 803 |
| BstV1I | GCAGC | 5 cut(s) | 191, 211, 530, 706, 709 |
| BstV2I | GAAGAC | 1 cut(s) | 837 |
| BstX2I | RGATCY | 2 cut(s) | 51, 666 |
| BstYI | RGATCY | 2 cut(s) | 51, 666 |
| BstZI | CGGCCG | 1 cut(s) | 98 |
| BsuI | GTATCC | 1 cut(s) | 611 |
| BsuRI | GGCC | 4 cut(s) | 100, 251, 271, 444 |
| BtrI | CACGTC | 2 cut(s) | 365, 405 |
| BtsCI | GGATG | 5 cut(s) | 85, 259, 381, 570, 774 |
| Cac8I | GCNNGC | 5 cut(s) | 12, 379, 412, 430, 647 |
| CaiI | CAGNNNCTG | 1 cut(s) | 614 |
| CciI | TCATGA | 1 cut(s) | 780 |
| CfoI | GCGC | 3 cut(s) | 614, 645, 805 |
| Cfr10I | RCCGGY | 6 cut(s) | 75, 96, 267, 295, 414, 428 |
| Cfr13I | GGNCC | 1 cut(s) | 631 |
| Csp6I | GTAC | 5 cut(s) | 510, 675, 701, 705, 817 |
| CviAII | CATG | 3 cut(s) | 396, 781, 793 |
| CviQI | GTAC | 5 cut(s) | 510, 675, 701, 705, 817 |
| DdeI | CTNAG | 2 cut(s) | 33, 671 |
| DpnI | GATC | 3 cut(s) | 53, 668, 680 |
| DpnII | GATC | 3 cut(s) | 51, 666, 678 |
| EaeI | YGGCCR | 3 cut(s) | 98, 269, 442 |
| EagI | CGGCCG | 1 cut(s) | 98 |
| Eam1104I | CTCTTC | 1 cut(s) | 273 |
| EarI | CTCTTC | 1 cut(s) | 273 |
| EclXI | CGGCCG | 1 cut(s) | 98 |
| Eco105I | TACGTA | 1 cut(s) | 704 |
| Eco147I | AGGCCT | 1 cut(s) | 251 |
| Eco47I | GGWCC | 1 cut(s) | 631 |
| Eco52I | CGGCCG | 1 cut(s) | 98 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 824 |
| EcoRII | CCWGG | 1 cut(s) | 61 |
| FaeI | CATG | 3 cut(s) | 399, 784, 796 |
| FaiI | YATR | 6 cut(s) | 185, 255, 397, 782, 794, 847 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 572, 604 |
| FatI | CATG | 3 cut(s) | 395, 780, 792 |
| Fnu4HI | GCNGC | 7 cut(s) | 38, 180, 200, 348, 519, 720, 723 |
| FokI | GGATG | 5 cut(s) | 72, 246, 368, 577, 761 |
| Fsp4HI | GCNGC | 7 cut(s) | 38, 180, 200, 348, 519, 720, 723 |
| FspBI | CTAG | 3 cut(s) | 117, 599, 859 |
| GlaI | GCGC | 3 cut(s) | 613, 644, 804 |
| GluI | GCNGC | 7 cut(s) | 38, 180, 200, 348, 519, 720, 723 |
| GsuI | CTGGAG | 1 cut(s) | 45 |
| HaeII | RGCGCY | 1 cut(s) | 615 |
| HaeIII | GGCC | 4 cut(s) | 100, 251, 271, 444 |
| HhaI | GCGC | 3 cut(s) | 614, 645, 805 |
| Hin1II | CATG | 3 cut(s) | 399, 784, 796 |
| Hin6I | GCGC | 3 cut(s) | 612, 643, 803 |
| HinP1I | GCGC | 3 cut(s) | 612, 643, 803 |
| HincII | GTYRAC | 1 cut(s) | 420 |
| HindII | GTYRAC | 1 cut(s) | 420 |
| HinfI | GANTC | 1 cut(s) | 66 |
| HphI | GGTGA | 1 cut(s) | 159 |
| Hpy166II | GTNNAC | 1 cut(s) | 420 |
| Hpy188I | TCNGA | 4 cut(s) | 71, 264, 465, 550 |
| Hpy188III | TCNNGA | 3 cut(s) | 670, 695, 781 |
| Hpy8I | GTNNAC | 1 cut(s) | 420 |
| HpyAV | CCTTC | 2 cut(s) | 25, 171 |
| HpyCH4III | ACNGT | 2 cut(s) | 509, 526 |
| HpyCH4IV | ACGT | 5 cut(s) | 138, 364, 404, 699, 703 |
| HpyCH4V | TGCA | 2 cut(s) | 179, 199 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 347, 353, 367, 398, 407, 731, 740, 761 |
| HpyF3I | CTNAG | 2 cut(s) | 33, 671 |
| HpySE526I | ACGT | 5 cut(s) | 138, 364, 404, 699, 703 |
| Hsp92II | CATG | 3 cut(s) | 399, 784, 796 |
| HspAI | GCGC | 3 cut(s) | 612, 643, 803 |
| KroI | GCCGGC | 1 cut(s) | 428 |
| KroNI | GCCGGC | 1 cut(s) | 430 |
| Kzo9I | GATC | 3 cut(s) | 51, 666, 678 |
| LmnI | GCTCC | 2 cut(s) | 598, 810 |
| Lsp1109I | GCAGC | 5 cut(s) | 191, 211, 530, 706, 709 |
| LweI | GCATC | 2 cut(s) | 390, 658 |
| MaeI | CTAG | 3 cut(s) | 117, 599, 859 |
| MaeII | ACGT | 5 cut(s) | 138, 364, 404, 699, 703 |
| MaeIII | GTNAC | 2 cut(s) | 526, 569 |
| MalI | GATC | 3 cut(s) | 53, 668, 680 |
| MboI | GATC | 3 cut(s) | 51, 666, 678 |
| MboII | GAAGA | 4 cut(s) | 61, 139, 290, 842 |
| MflI | RGATCY | 2 cut(s) | 51, 666 |
| MhlI | GDGCHC | 1 cut(s) | 12 |
| MluCI | AATT | 3 cut(s) | 469, 492, 796 |
| MlyI | GAGTC | 1 cut(s) | 75 |
| MmeI | TCCRAC | 3 cut(s) | 232, 488, 573 |
| MroNI | GCCGGC | 1 cut(s) | 428 |
| MseI | TTAA | 2 cut(s) | 560, 654 |
| MslI | CAYNNNNRTG | 1 cut(s) | 779 |
| MspCI | CTTAAG | 1 cut(s) | 653 |
| MspR9I | CCNGG | 3 cut(s) | 63, 150, 221 |
| MvaI | CCWGG | 1 cut(s) | 63 |
| MvnI | CGCG | 1 cut(s) | 803 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 347, 353, 367, 398, 407, 731, 740, 761 |
| NaeI | GCCGGC | 1 cut(s) | 430 |
| NciI | CCSGG | 2 cut(s) | 150, 221 |
| NdeII | GATC | 3 cut(s) | 51, 666, 678 |
| NgoMIV | GCCGGC | 1 cut(s) | 428 |
| NlaIII | CATG | 3 cut(s) | 399, 784, 796 |
| NlaIV | GGNNCC | 3 cut(s) | 225, 632, 668 |
| NspI | RCATGY | 1 cut(s) | 399 |
| PagI | TCATGA | 1 cut(s) | 780 |
| PceI | AGGCCT | 1 cut(s) | 251 |
| PciI | ACATGT | 1 cut(s) | 395 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 752 |
| PdiI | GCCGGC | 1 cut(s) | 430 |
| Pfl23II | CGTACG | 1 cut(s) | 700 |
| PfoI | TCCNGGA | 1 cut(s) | 61 |
| PkrI | GCNGC | 7 cut(s) | 39, 181, 201, 349, 520, 721, 724 |
| PleI | GAGTC | 1 cut(s) | 74 |
| PpsI | GAGTC | 1 cut(s) | 74 |
| Ppu21I | YACGTR | 1 cut(s) | 704 |
| PscI | ACATGT | 1 cut(s) | 395 |
| Psp1406I | AACGTT | 1 cut(s) | 138 |
| Psp6I | CCWGG | 1 cut(s) | 61 |
| PspGI | CCWGG | 1 cut(s) | 61 |
| PspLI | CGTACG | 1 cut(s) | 700 |
| PspN4I | GGNNCC | 3 cut(s) | 225, 632, 668 |
| PspPI | GGNCC | 1 cut(s) | 631 |
| PstI | CTGCAG | 2 cut(s) | 181, 201 |
| PstNI | CAGNNNCTG | 1 cut(s) | 614 |
| PsuI | RGATCY | 2 cut(s) | 51, 666 |
| RsaI | GTAC | 5 cut(s) | 511, 676, 702, 706, 818 |
| RsaNI | GTAC | 5 cut(s) | 510, 675, 701, 705, 817 |
| RseI | CAYNNNNRTG | 1 cut(s) | 779 |
| SaqAI | TTAA | 2 cut(s) | 560, 654 |
| SatI | GCNGC | 7 cut(s) | 38, 180, 200, 348, 519, 720, 723 |
| Sau3AI | GATC | 3 cut(s) | 51, 666, 678 |
| Sau96I | GGNCC | 1 cut(s) | 631 |
| ScaI | AGTACT | 1 cut(s) | 511 |
| SchI | GAGTC | 1 cut(s) | 75 |
| ScrFI | CCNGG | 3 cut(s) | 63, 150, 221 |
| SduI | GDGCHC | 1 cut(s) | 12 |
| SfaNI | GCATC | 2 cut(s) | 390, 658 |
| SfcI | CTRYAG | 4 cut(s) | 177, 197, 505, 522 |
| SinI | GGWCC | 1 cut(s) | 631 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 779 |
| SmlI | CTYRAG | 1 cut(s) | 653 |
| SmoI | CTYRAG | 1 cut(s) | 653 |
| SnaBI | TACGTA | 1 cut(s) | 704 |
| Sse9I | AATT | 3 cut(s) | 469, 492, 796 |
| SseBI | AGGCCT | 1 cut(s) | 251 |
| SsiI | CCGC | 2 cut(s) | 38, 348 |
| SspMI | CTAG | 3 cut(s) | 117, 599, 859 |
| StuI | AGGCCT | 1 cut(s) | 251 |
| StyD4I | CCNGG | 3 cut(s) | 61, 148, 219 |
| TaaI | ACNGT | 2 cut(s) | 509, 526 |
| TaiI | ACGT | 5 cut(s) | 141, 367, 407, 702, 706 |
| TaqI | TCGA | 1 cut(s) | 47 |
| TasI | AATT | 3 cut(s) | 469, 492, 796 |
| TatI | WGTACW | 1 cut(s) | 509 |
| TauI | GCSGC | 2 cut(s) | 40, 350 |
| Tru1I | TTAA | 2 cut(s) | 560, 654 |
| Tru9I | TTAA | 2 cut(s) | 560, 654 |
| TseI | GCWGC | 5 cut(s) | 179, 199, 518, 719, 722 |
| TspDTI | ATGAA | 2 cut(s) | 774, 809 |
| TspGWI | ACGGA | 1 cut(s) | 623 |
| Vha464I | CTTAAG | 1 cut(s) | 653 |
| VpaK11BI | GGWCC | 1 cut(s) | 631 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 824 |
| XapI | RAATTY | 1 cut(s) | 492 |
| XceI | RCATGY | 1 cut(s) | 399 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 843 |
| XspI | CTAG | 3 cut(s) | 117, 599, 859 |
| ZrmI | AGTACT | 1 cut(s) | 511 |