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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 642 |
| AccB1I | GGYRCC | 3 cut(s) | 597, 672, 752 |
| AccII | CGCG | 1 cut(s) | 582 |
| AccIII | TCCGGA | 1 cut(s) | 562 |
| AciI | CCGC | 3 cut(s) | 79, 274, 676 |
| AclWI | GGATC | 2 cut(s) | 464, 534 |
| AcsI | RAATTY | 2 cut(s) | 341, 820 |
| AcyI | GRCGYC | 2 cut(s) | 598, 735 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 701 |
| AflIII | ACRYGT | 1 cut(s) | 135 |
| AgsI | TTSAA | 2 cut(s) | 289, 788 |
| AjnI | CCWGG | 2 cut(s) | 129, 757 |
| AluBI | AGCT | 4 cut(s) | 155, 161, 475, 485 |
| AluI | AGCT | 4 cut(s) | 155, 161, 475, 485 |
| Alw21I | GWGCWC | 1 cut(s) | 477 |
| Alw26I | GTCTC | 4 cut(s) | 205, 392, 715, 874 |
| AlwI | GGATC | 2 cut(s) | 464, 534 |
| Aor13HI | TCCGGA | 1 cut(s) | 562 |
| AoxI | GGCC | 1 cut(s) | 93 |
| ApeKI | GCWGC | 2 cut(s) | 179, 767 |
| ApoI | RAATTY | 2 cut(s) | 341, 820 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 318 |
| AspA2I | CCTAGG | 1 cut(s) | 695 |
| AspLEI | GCGC | 2 cut(s) | 584, 600 |
| AspS9I | GGNCC | 1 cut(s) | 644 |
| AsuHPI | GGTGA | 5 cut(s) | 677, 758, 766, 773, 850 |
| AvaII | GGWCC | 1 cut(s) | 644 |
| AvrII | CCTAGG | 1 cut(s) | 695 |
| AxyI | CCTNAGG | 2 cut(s) | 620, 862 |
| BaeGI | GKGCMC | 1 cut(s) | 675 |
| BanI | GGYRCC | 3 cut(s) | 597, 672, 752 |
| BanII | GRGCYC | 1 cut(s) | 477 |
| Bbv12I | GWGCWC | 1 cut(s) | 477 |
| BbvI | GCAGC | 2 cut(s) | 191, 754 |
| BccI | CCATC | 6 cut(s) | 92, 255, 409, 695, 743, 747 |
| BciT130I | CCWGG | 2 cut(s) | 131, 759 |
| BciVI | GTATCC | 1 cut(s) | 619 |
| BcoDI | GTCTC | 4 cut(s) | 205, 392, 715, 874 |
| BfaI | CTAG | 4 cut(s) | 107, 126, 251, 696 |
| BfmI | CTRYAG | 1 cut(s) | 447 |
| BfoI | RGCGCY | 1 cut(s) | 601 |
| BfuI | GTATCC | 1 cut(s) | 619 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 188 |
| BisI | GCNGC | 2 cut(s) | 180, 768 |
| BlnI | CCTAGG | 1 cut(s) | 695 |
| BlsI | GCNGC | 2 cut(s) | 181, 769 |
| Bme1390I | CCNGG | 2 cut(s) | 131, 759 |
| Bme18I | GGWCC | 1 cut(s) | 644 |
| BmgT120I | GGNCC | 1 cut(s) | 644 |
| BmiI | GGNNCC | 3 cut(s) | 599, 674, 754 |
| BmrFI | CCNGG | 2 cut(s) | 131, 759 |
| BmsI | GCATC | 2 cut(s) | 94, 754 |
| BpuEI | CTTGAG | 3 cut(s) | 74, 104, 141 |
| BsaHI | GRCGYC | 2 cut(s) | 598, 735 |
| BsaI | GGTCTC | 2 cut(s) | 205, 874 |
| BsaJI | CCNNGG | 3 cut(s) | 336, 695, 757 |
| BsaWI | WCCGGW | 1 cut(s) | 562 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 701 |
| Bse1I | ACTGG | 1 cut(s) | 49 |
| Bse21I | CCTNAGG | 2 cut(s) | 620, 862 |
| BseAI | TCCGGA | 1 cut(s) | 562 |
| BseBI | CCWGG | 2 cut(s) | 131, 759 |
| BseDI | CCNNGG | 3 cut(s) | 336, 695, 757 |
| BseGI | GGATG | 1 cut(s) | 706 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 701 |
| BseMII | CTCAG | 1 cut(s) | 869 |
| BseNI | ACTGG | 1 cut(s) | 49 |
| BseSI | GKGCMC | 1 cut(s) | 675 |
| BseXI | GCAGC | 2 cut(s) | 191, 754 |
| Bsh1236I | CGCG | 1 cut(s) | 582 |
| BshFI | GGCC | 1 cut(s) | 95 |
| BshNI | GGYRCC | 3 cut(s) | 597, 672, 752 |
| BsiHKAI | GWGCWC | 1 cut(s) | 477 |
| BsiSI | CCGG | 1 cut(s) | 563 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 701 |
| BsmAI | GTCTC | 4 cut(s) | 205, 392, 715, 874 |
| BsnI | GGCC | 1 cut(s) | 95 |
| Bso31I | GGTCTC | 2 cut(s) | 205, 874 |
| Bsp1286I | GDGCHC | 2 cut(s) | 477, 675 |
| Bsp13I | TCCGGA | 1 cut(s) | 562 |
| Bsp143I | GATC | 3 cut(s) | 357, 456, 539 |
| Bsp19I | CCATGG | 1 cut(s) | 336 |
| BspACI | CCGC | 3 cut(s) | 79, 274, 676 |
| BspANI | GGCC | 1 cut(s) | 95 |
| BspCNI | CTCAG | 1 cut(s) | 870 |
| BspEI | TCCGGA | 1 cut(s) | 562 |
| BspFNI | CGCG | 1 cut(s) | 582 |
| BspHI | TCATGA | 1 cut(s) | 469 |
| BspLI | GGNNCC | 3 cut(s) | 599, 674, 754 |
| BspPI | GGATC | 2 cut(s) | 464, 534 |
| BspQI | GCTCTTC | 1 cut(s) | 664 |
| BspT107I | GGYRCC | 3 cut(s) | 597, 672, 752 |
| BspTNI | GGTCTC | 2 cut(s) | 205, 874 |
| BsrI | ACTGG | 1 cut(s) | 49 |
| BssECI | CCNNGG | 3 cut(s) | 336, 695, 757 |
| BssMI | GATC | 3 cut(s) | 357, 456, 539 |
| BssNI | GRCGYC | 2 cut(s) | 598, 735 |
| BssT1I | CCWWGG | 2 cut(s) | 336, 695 |
| Bst2UI | CCWGG | 2 cut(s) | 131, 759 |
| Bst4CI | ACNGT | 2 cut(s) | 145, 885 |
| Bst6I | CTCTTC | 2 cut(s) | 377, 664 |
| BstACI | GRCGYC | 2 cut(s) | 598, 735 |
| BstC8I | GCNNGC | 2 cut(s) | 83, 153 |
| BstDEI | CTNAG | 7 cut(s) | 184, 423, 588, 620, 806, 862, 878 |
| BstDSI | CCRYGG | 1 cut(s) | 336 |
| BstF5I | GGATG | 1 cut(s) | 706 |
| BstFNI | CGCG | 1 cut(s) | 582 |
| BstH2I | RGCGCY | 1 cut(s) | 601 |
| BstHHI | GCGC | 2 cut(s) | 584, 600 |
| BstKTI | GATC | 3 cut(s) | 360, 459, 542 |
| BstMAI | GTCTC | 4 cut(s) | 205, 392, 715, 874 |
| BstMBI | GATC | 3 cut(s) | 357, 456, 539 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 188, 604, 841 |
| BstNI | CCWGG | 2 cut(s) | 131, 759 |
| BstSCI | CCNGG | 2 cut(s) | 129, 757 |
| BstSFI | CTRYAG | 1 cut(s) | 447 |
| BstSLI | GKGCMC | 1 cut(s) | 675 |
| BstUI | CGCG | 1 cut(s) | 582 |
| BstV1I | GCAGC | 2 cut(s) | 191, 754 |
| BstX2I | RGATCY | 1 cut(s) | 539 |
| BstYI | RGATCY | 1 cut(s) | 539 |
| Bsu36I | CCTNAGG | 2 cut(s) | 620, 862 |
| BsuI | GTATCC | 1 cut(s) | 619 |
| BsuRI | GGCC | 1 cut(s) | 95 |
| BtgI | CCRYGG | 1 cut(s) | 336 |
| BtgZI | GCGATG | 1 cut(s) | 383 |
| BtsCI | GGATG | 1 cut(s) | 706 |
| Cac8I | GCNNGC | 2 cut(s) | 83, 153 |
| CciI | TCATGA | 1 cut(s) | 469 |
| CfoI | GCGC | 2 cut(s) | 584, 600 |
| Cfr13I | GGNCC | 1 cut(s) | 644 |
| CseI | GACGC | 2 cut(s) | 724, 811 |
| CviAII | CATG | 5 cut(s) | 337, 470, 506, 727, 743 |
| DdeI | CTNAG | 7 cut(s) | 184, 423, 588, 620, 806, 862, 878 |
| DinI | GGCGCC | 1 cut(s) | 599 |
| DpnI | GATC | 3 cut(s) | 359, 458, 541 |
| DpnII | GATC | 3 cut(s) | 357, 456, 539 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 642 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 642 |
| Eam1104I | CTCTTC | 2 cut(s) | 377, 664 |
| EarI | CTCTTC | 2 cut(s) | 377, 664 |
| EciI | GGCGGA | 1 cut(s) | 68 |
| Ecl136II | GAGCTC | 1 cut(s) | 475 |
| Eco130I | CCWWGG | 2 cut(s) | 336, 695 |
| Eco24I | GRGCYC | 1 cut(s) | 477 |
| Eco31I | GGTCTC | 2 cut(s) | 205, 874 |
| Eco32I | GATATC | 1 cut(s) | 56 |
| Eco47I | GGWCC | 1 cut(s) | 644 |
| Eco53kI | GAGCTC | 1 cut(s) | 475 |
| Eco81I | CCTNAGG | 2 cut(s) | 620, 862 |
| EcoICRI | GAGCTC | 1 cut(s) | 475 |
| EcoRI | GAATTC | 1 cut(s) | 341 |
| EcoRII | CCWGG | 2 cut(s) | 129, 757 |
| EcoRV | GATATC | 1 cut(s) | 56 |
| EcoT14I | CCWWGG | 2 cut(s) | 336, 695 |
| EcoT38I | GRGCYC | 1 cut(s) | 477 |
| EgeI | GGCGCC | 1 cut(s) | 599 |
| EheI | GGCGCC | 1 cut(s) | 599 |
| ErhI | CCWWGG | 2 cut(s) | 336, 695 |
| FaeI | CATG | 5 cut(s) | 340, 473, 509, 730, 746 |
| FatI | CATG | 5 cut(s) | 336, 469, 505, 726, 742 |
| Fnu4HI | GCNGC | 2 cut(s) | 180, 768 |
| FokI | GGATG | 1 cut(s) | 713 |
| FriOI | GRGCYC | 1 cut(s) | 477 |
| Fsp4HI | GCNGC | 2 cut(s) | 180, 768 |
| FspBI | CTAG | 4 cut(s) | 107, 126, 251, 696 |
| GlaI | GCGC | 2 cut(s) | 583, 599 |
| GluI | GCNGC | 2 cut(s) | 180, 768 |
| HaeII | RGCGCY | 1 cut(s) | 601 |
| HaeIII | GGCC | 1 cut(s) | 95 |
| HapII | CCGG | 1 cut(s) | 563 |
| HgaI | GACGC | 2 cut(s) | 724, 811 |
| HhaI | GCGC | 2 cut(s) | 584, 600 |
| Hin1I | GRCGYC | 2 cut(s) | 598, 735 |
| Hin1II | CATG | 5 cut(s) | 340, 473, 509, 730, 746 |
| Hin6I | GCGC | 2 cut(s) | 582, 598 |
| HinP1I | GCGC | 2 cut(s) | 582, 598 |
| HincII | GTYRAC | 1 cut(s) | 141 |
| HindII | GTYRAC | 1 cut(s) | 141 |
| HindIII | AAGCTT | 1 cut(s) | 159 |
| HinfI | GANTC | 7 cut(s) | 102, 115, 233, 385, 566, 930, 941 |
| HpaI | GTTAAC | 1 cut(s) | 141 |
| HpaII | CCGG | 1 cut(s) | 563 |
| HphI | GGTGA | 5 cut(s) | 677, 758, 766, 773, 850 |
| Hpy166II | GTNNAC | 1 cut(s) | 141 |
| Hpy188I | TCNGA | 2 cut(s) | 313, 801 |
| Hpy188III | TCNNGA | 6 cut(s) | 51, 245, 470, 537, 563, 633 |
| Hpy8I | GTNNAC | 1 cut(s) | 141 |
| HpyAV | CCTTC | 4 cut(s) | 406, 588, 662, 692 |
| HpyCH4III | ACNGT | 2 cut(s) | 145, 885 |
| HpyCH4IV | ACGT | 3 cut(s) | 137, 637, 811 |
| HpyCH4V | TGCA | 3 cut(s) | 410, 770, 893 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 188, 604, 841 |
| HpyF3I | CTNAG | 7 cut(s) | 184, 423, 588, 620, 806, 862, 878 |
| HpySE526I | ACGT | 3 cut(s) | 137, 637, 811 |
| Hsp92I | GRCGYC | 2 cut(s) | 598, 735 |
| Hsp92II | CATG | 5 cut(s) | 340, 473, 509, 730, 746 |
| HspAI | GCGC | 2 cut(s) | 582, 598 |
| KasI | GGCGCC | 1 cut(s) | 597 |
| Kpn2I | TCCGGA | 1 cut(s) | 562 |
| KspAI | GTTAAC | 1 cut(s) | 141 |
| Kzo9I | GATC | 3 cut(s) | 357, 456, 539 |
| LguI | GCTCTTC | 1 cut(s) | 664 |
| LmnI | GCTCC | 1 cut(s) | 34 |
| Lsp1109I | GCAGC | 2 cut(s) | 191, 754 |
| LweI | GCATC | 2 cut(s) | 94, 754 |
| MaeI | CTAG | 4 cut(s) | 107, 126, 251, 696 |
| MaeII | ACGT | 3 cut(s) | 137, 637, 811 |
| MaeIII | GTNAC | 4 cut(s) | 5, 230, 442, 812 |
| MalI | GATC | 3 cut(s) | 359, 458, 541 |
| MboI | GATC | 3 cut(s) | 357, 456, 539 |
| MboII | GAAGA | 5 cut(s) | 179, 290, 394, 535, 651 |
| MflI | RGATCY | 1 cut(s) | 539 |
| MhlI | GDGCHC | 2 cut(s) | 477, 675 |
| MluCI | AATT | 6 cut(s) | 341, 435, 532, 571, 820, 869 |
| Mly113I | GGCGCC | 1 cut(s) | 598 |
| MlyI | GAGTC | 2 cut(s) | 227, 394 |
| MnlI | CCTC | 4 cut(s) | 181, 281, 343, 855 |
| MroI | TCCGGA | 1 cut(s) | 562 |
| MroXI | GAANNNNTTC | 1 cut(s) | 318 |
| MseI | TTAA | 2 cut(s) | 140, 327 |
| MslI | CAYNNNNRTG | 2 cut(s) | 744, 747 |
| MspI | CCGG | 1 cut(s) | 563 |
| MspR9I | CCNGG | 2 cut(s) | 131, 759 |
| MvaI | CCWGG | 2 cut(s) | 131, 759 |
| MvnI | CGCG | 1 cut(s) | 582 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 188, 604, 841 |
| NarI | GGCGCC | 1 cut(s) | 598 |
| NcoI | CCATGG | 1 cut(s) | 336 |
| NdeII | GATC | 3 cut(s) | 357, 456, 539 |
| NlaIII | CATG | 5 cut(s) | 340, 473, 509, 730, 746 |
| NlaIV | GGNNCC | 3 cut(s) | 599, 674, 754 |
| NmuCI | GTSAC | 1 cut(s) | 230 |
| PagI | TCATGA | 1 cut(s) | 469 |
| PciSI | GCTCTTC | 1 cut(s) | 664 |
| PdmI | GAANNNNTTC | 1 cut(s) | 318 |
| PfeI | GAWTC | 5 cut(s) | 102, 115, 566, 930, 941 |
| PkrI | GCNGC | 2 cut(s) | 181, 769 |
| PleI | GAGTC | 2 cut(s) | 227, 393 |
| PluTI | GGCGCC | 1 cut(s) | 601 |
| PpsI | GAGTC | 2 cut(s) | 227, 393 |
| Psp124BI | GAGCTC | 1 cut(s) | 477 |
| Psp6I | CCWGG | 2 cut(s) | 129, 757 |
| PspGI | CCWGG | 2 cut(s) | 129, 757 |
| PspN4I | GGNNCC | 3 cut(s) | 599, 674, 754 |
| PspPI | GGNCC | 1 cut(s) | 644 |
| PsuI | RGATCY | 1 cut(s) | 539 |
| RseI | CAYNNNNRTG | 2 cut(s) | 744, 747 |
| SacI | GAGCTC | 1 cut(s) | 477 |
| SapI | GCTCTTC | 1 cut(s) | 664 |
| SaqAI | TTAA | 2 cut(s) | 140, 327 |
| SatI | GCNGC | 2 cut(s) | 180, 768 |
| Sau3AI | GATC | 3 cut(s) | 357, 456, 539 |
| Sau96I | GGNCC | 1 cut(s) | 644 |
| SchI | GAGTC | 2 cut(s) | 227, 394 |
| ScrFI | CCNGG | 2 cut(s) | 131, 759 |
| SduI | GDGCHC | 2 cut(s) | 477, 675 |
| SfaNI | GCATC | 2 cut(s) | 94, 754 |
| SfcI | CTRYAG | 1 cut(s) | 447 |
| SfoI | GGCGCC | 1 cut(s) | 599 |
| SinI | GGWCC | 1 cut(s) | 644 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 744, 747 |
| SmlI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| SmoI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| Sse9I | AATT | 6 cut(s) | 341, 435, 532, 571, 820, 869 |
| SsiI | CCGC | 3 cut(s) | 79, 274, 676 |
| SspDI | GGCGCC | 1 cut(s) | 597 |
| SspMI | CTAG | 4 cut(s) | 107, 126, 251, 696 |
| SstI | GAGCTC | 1 cut(s) | 477 |
| StyD4I | CCNGG | 2 cut(s) | 129, 757 |
| StyI | CCWWGG | 2 cut(s) | 336, 695 |
| TaaI | ACNGT | 2 cut(s) | 145, 885 |
| TaiI | ACGT | 3 cut(s) | 140, 640, 814 |
| TaqI | TCGA | 2 cut(s) | 433, 536 |
| TasI | AATT | 6 cut(s) | 341, 435, 532, 571, 820, 869 |
| TfiI | GAWTC | 5 cut(s) | 102, 115, 566, 930, 941 |
| Tru1I | TTAA | 2 cut(s) | 140, 327 |
| Tru9I | TTAA | 2 cut(s) | 140, 327 |
| TseFI | GTSAC | 1 cut(s) | 230 |
| TseI | GCWGC | 2 cut(s) | 179, 767 |
| Tsp45I | GTSAC | 1 cut(s) | 230 |
| TspDTI | ATGAA | 4 cut(s) | 458, 503, 743, 917 |
| TspGWI | ACGGA | 4 cut(s) | 218, 469, 532, 923 |
| VpaK11BI | GGWCC | 1 cut(s) | 644 |
| XapI | RAATTY | 2 cut(s) | 341, 820 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 746 |
| XmaJI | CCTAGG | 1 cut(s) | 695 |
| XmnI | GAANNNNTTC | 1 cut(s) | 318 |
| XspI | CTAG | 4 cut(s) | 107, 126, 251, 696 |