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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 345, 390 |
| AccB1I | GGYRCC | 1 cut(s) | 566 |
| AccBSI | CCGCTC | 1 cut(s) | 418 |
| AciI | CCGC | 3 cut(s) | 247, 418, 466 |
| AclWI | GGATC | 1 cut(s) | 278 |
| AcuI | CTGAAG | 1 cut(s) | 273 |
| AcvI | CACGTG | 2 cut(s) | 509, 527 |
| AcyI | GRCGYC | 1 cut(s) | 7 |
| AdeI | CACNNNGTG | 1 cut(s) | 512 |
| AfaI | GTAC | 1 cut(s) | 740 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 153, 404, 405, 475, 528, 557, 580 |
| AflIII | ACRYGT | 3 cut(s) | 506, 524, 630 |
| AgsI | TTSAA | 7 cut(s) | 74, 103, 126, 351, 667, 699, 796 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 170 |
| AjnI | CCWGG | 1 cut(s) | 550 |
| AluBI | AGCT | 7 cut(s) | 64, 131, 187, 289, 311, 695, 800 |
| AluI | AGCT | 7 cut(s) | 64, 131, 187, 289, 311, 695, 800 |
| Alw21I | GWGCWC | 1 cut(s) | 816 |
| Alw26I | GTCTC | 1 cut(s) | 762 |
| Alw44I | GTGCAC | 1 cut(s) | 812 |
| AlwI | GGATC | 1 cut(s) | 278 |
| AoxI | GGCC | 1 cut(s) | 353 |
| ApaLI | GTGCAC | 1 cut(s) | 812 |
| AspLEI | GCGC | 2 cut(s) | 90, 411 |
| AspS9I | GGNCC | 3 cut(s) | 354, 455, 718 |
| AsuHPI | GGTGA | 3 cut(s) | 128, 394, 772 |
| AvaII | GGWCC | 2 cut(s) | 455, 718 |
| AxyI | CCTNAGG | 2 cut(s) | 579, 722 |
| BaeGI | GKGCMC | 1 cut(s) | 816 |
| BanI | GGYRCC | 1 cut(s) | 566 |
| BauI | CACGAG | 2 cut(s) | 274, 332 |
| BbrPI | CACGTG | 2 cut(s) | 509, 527 |
| Bbv12I | GWGCWC | 1 cut(s) | 816 |
| BccI | CCATC | 1 cut(s) | 783 |
| BciT130I | CCWGG | 1 cut(s) | 552 |
| BciVI | GTATCC | 1 cut(s) | 557 |
| BcoDI | GTCTC | 1 cut(s) | 762 |
| BfaI | CTAG | 1 cut(s) | 692 |
| BfmI | CTRYAG | 2 cut(s) | 140, 306 |
| BfuI | GTATCC | 1 cut(s) | 557 |
| Bme1390I | CCNGG | 1 cut(s) | 552 |
| Bme18I | GGWCC | 2 cut(s) | 455, 718 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 170 |
| BmgT120I | GGNCC | 3 cut(s) | 354, 455, 718 |
| BmiI | GGNNCC | 3 cut(s) | 422, 456, 568 |
| BmrFI | CCNGG | 1 cut(s) | 552 |
| BmsI | GCATC | 2 cut(s) | 43, 811 |
| BoxI | GACNNNNGTC | 1 cut(s) | 633 |
| Bsa29I | ATCGAT | 1 cut(s) | 640 |
| BsaAI | YACGTR | 2 cut(s) | 509, 527 |
| BsaBI | GATNNNNATC | 1 cut(s) | 646 |
| BsaHI | GRCGYC | 1 cut(s) | 7 |
| BsaJI | CCNNGG | 1 cut(s) | 550 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 26, 56, 523, 553, 559, 589 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 153, 404, 405, 475, 528, 557, 580 |
| Bse21I | CCTNAGG | 2 cut(s) | 579, 722 |
| Bse3DI | GCAATG | 1 cut(s) | 677 |
| Bse8I | GATNNNNATC | 1 cut(s) | 646 |
| BseBI | CCWGG | 1 cut(s) | 552 |
| BseCI | ATCGAT | 1 cut(s) | 640 |
| BseDI | CCNNGG | 1 cut(s) | 550 |
| BseGI | GGATG | 3 cut(s) | 58, 771, 826 |
| BseJI | GATNNNNATC | 1 cut(s) | 646 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 153, 404, 405, 475, 528, 557, 580 |
| BseMI | GCAATG | 1 cut(s) | 677 |
| BseMII | CTCAG | 3 cut(s) | 40, 303, 713 |
| BseSI | GKGCMC | 1 cut(s) | 816 |
| BsgI | GTGCAG | 1 cut(s) | 519 |
| BshFI | GGCC | 1 cut(s) | 355 |
| BshNI | GGYRCC | 1 cut(s) | 566 |
| BshVI | ATCGAT | 1 cut(s) | 640 |
| BsiHKAI | GWGCWC | 1 cut(s) | 816 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 153, 404, 405, 475, 528, 557, 580 |
| BsmAI | GTCTC | 1 cut(s) | 762 |
| BsnI | GGCC | 1 cut(s) | 355 |
| Bsp1286I | GDGCHC | 1 cut(s) | 816 |
| Bsp143I | GATC | 2 cut(s) | 45, 270 |
| BspACI | CCGC | 3 cut(s) | 247, 418, 466 |
| BspANI | GGCC | 1 cut(s) | 355 |
| BspCNI | CTCAG | 3 cut(s) | 39, 304, 714 |
| BspDI | ATCGAT | 1 cut(s) | 640 |
| BspHI | TCATGA | 1 cut(s) | 376 |
| BspLI | GGNNCC | 3 cut(s) | 422, 456, 568 |
| BspPI | GGATC | 1 cut(s) | 278 |
| BspQI | GCTCTTC | 1 cut(s) | 138 |
| BspT107I | GGYRCC | 1 cut(s) | 566 |
| BsrBI | CCGCTC | 1 cut(s) | 418 |
| BsrDI | GCAATG | 1 cut(s) | 677 |
| BssECI | CCNNGG | 1 cut(s) | 550 |
| BssMI | GATC | 2 cut(s) | 45, 270 |
| BssNI | GRCGYC | 1 cut(s) | 7 |
| BssSI | CACGAG | 2 cut(s) | 274, 332 |
| Bst2BI | CACGAG | 2 cut(s) | 274, 332 |
| Bst2UI | CCWGG | 1 cut(s) | 552 |
| Bst4CI | ACNGT | 1 cut(s) | 144 |
| Bst6I | CTCTTC | 1 cut(s) | 138 |
| BstACI | GRCGYC | 1 cut(s) | 7 |
| BstBAI | YACGTR | 2 cut(s) | 509, 527 |
| BstC8I | GCNNGC | 2 cut(s) | 682, 686 |
| BstDEI | CTNAG | 5 cut(s) | 26, 312, 426, 579, 722 |
| BstF5I | GGATG | 3 cut(s) | 58, 771, 826 |
| BstHHI | GCGC | 2 cut(s) | 90, 411 |
| BstKTI | GATC | 2 cut(s) | 48, 273 |
| BstMAI | GTCTC | 1 cut(s) | 762 |
| BstMBI | GATC | 2 cut(s) | 45, 270 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 415, 681 |
| BstNI | CCWGG | 1 cut(s) | 552 |
| BstNSI | RCATGY | 1 cut(s) | 634 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 633 |
| BstSCI | CCNGG | 1 cut(s) | 550 |
| BstSFI | CTRYAG | 2 cut(s) | 140, 306 |
| BstSLI | GKGCMC | 1 cut(s) | 816 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 494 |
| Bsu15I | ATCGAT | 1 cut(s) | 640 |
| Bsu36I | CCTNAGG | 2 cut(s) | 579, 722 |
| BsuI | GTATCC | 1 cut(s) | 557 |
| BsuRI | GGCC | 1 cut(s) | 355 |
| BsuTUI | ATCGAT | 1 cut(s) | 640 |
| BtsCI | GGATG | 3 cut(s) | 58, 771, 826 |
| BtsIMutI | CAGTG | 1 cut(s) | 249 |
| Cac8I | GCNNGC | 2 cut(s) | 682, 686 |
| CciI | TCATGA | 1 cut(s) | 376 |
| CfoI | GCGC | 2 cut(s) | 90, 411 |
| Cfr13I | GGNCC | 3 cut(s) | 354, 455, 718 |
| ClaI | ATCGAT | 1 cut(s) | 640 |
| CseI | GACGC | 1 cut(s) | 15 |
| Csp6I | GTAC | 1 cut(s) | 739 |
| CviAII | CATG | 5 cut(s) | 13, 148, 320, 377, 631 |
| CviJI | RGCY | 9 cut(s) | 64, 131, 187, 224, 289, 311, 355, 695, 800 |
| CviKI_1 | RGCY | 9 cut(s) | 64, 131, 187, 224, 289, 311, 355, 695, 800 |
| CviQI | GTAC | 1 cut(s) | 739 |
| DdeI | CTNAG | 5 cut(s) | 26, 312, 426, 579, 722 |
| DpnI | GATC | 2 cut(s) | 47, 272 |
| DpnII | GATC | 2 cut(s) | 45, 270 |
| DraIII | CACNNNGTG | 1 cut(s) | 512 |
| DriI | GACNNNNNGTC | 1 cut(s) | 170 |
| Eam1104I | CTCTTC | 1 cut(s) | 138 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 170 |
| EarI | CTCTTC | 1 cut(s) | 138 |
| Eco47I | GGWCC | 2 cut(s) | 455, 718 |
| Eco57I | CTGAAG | 1 cut(s) | 273 |
| Eco72I | CACGTG | 2 cut(s) | 509, 527 |
| Eco81I | CCTNAGG | 2 cut(s) | 579, 722 |
| EcoO109I | RGGNCCY | 1 cut(s) | 718 |
| EcoRII | CCWGG | 1 cut(s) | 550 |
| FaeI | CATG | 5 cut(s) | 16, 151, 323, 380, 634 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 726, 758 |
| FatI | CATG | 5 cut(s) | 12, 147, 319, 376, 630 |
| FokI | GGATG | 3 cut(s) | 65, 758, 833 |
| FspBI | CTAG | 1 cut(s) | 692 |
| GlaI | GCGC | 2 cut(s) | 89, 410 |
| HaeIII | GGCC | 1 cut(s) | 355 |
| HgaI | GACGC | 1 cut(s) | 15 |
| HhaI | GCGC | 2 cut(s) | 90, 411 |
| Hin1I | GRCGYC | 1 cut(s) | 7 |
| Hin1II | CATG | 5 cut(s) | 16, 151, 323, 380, 634 |
| Hin6I | GCGC | 2 cut(s) | 88, 409 |
| HinP1I | GCGC | 2 cut(s) | 88, 409 |
| HinfI | GANTC | 2 cut(s) | 70, 647 |
| HphI | GGTGA | 3 cut(s) | 128, 394, 772 |
| Hpy166II | GTNNAC | 4 cut(s) | 164, 599, 739, 814 |
| Hpy188I | TCNGA | 1 cut(s) | 29 |
| Hpy188III | TCNNGA | 4 cut(s) | 274, 334, 377, 699 |
| Hpy8I | GTNNAC | 4 cut(s) | 164, 599, 739, 814 |
| Hpy99I | CGWCG | 1 cut(s) | 9 |
| HpyAV | CCTTC | 1 cut(s) | 220 |
| HpyCH4III | ACNGT | 1 cut(s) | 144 |
| HpyCH4IV | ACGT | 3 cut(s) | 508, 526, 595 |
| HpyCH4V | TGCA | 6 cut(s) | 56, 395, 500, 675, 746, 814 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 415, 681 |
| HpyF3I | CTNAG | 5 cut(s) | 26, 312, 426, 579, 722 |
| HpySE526I | ACGT | 3 cut(s) | 508, 526, 595 |
| Hsp92I | GRCGYC | 1 cut(s) | 7 |
| Hsp92II | CATG | 5 cut(s) | 16, 151, 323, 380, 634 |
| HspAI | GCGC | 2 cut(s) | 88, 409 |
| Kzo9I | GATC | 2 cut(s) | 45, 270 |
| LguI | GCTCTTC | 1 cut(s) | 138 |
| LmnI | GCTCC | 2 cut(s) | 415, 727 |
| LpnPI | CCDG | 6 cut(s) | 183, 249, 475, 537, 564, 734 |
| LweI | GCATC | 2 cut(s) | 43, 811 |
| MaeI | CTAG | 1 cut(s) | 692 |
| MaeII | ACGT | 3 cut(s) | 508, 526, 595 |
| MaeIII | GTNAC | 1 cut(s) | 172 |
| MalI | GATC | 2 cut(s) | 47, 272 |
| MbiI | CCGCTC | 1 cut(s) | 418 |
| MboI | GATC | 2 cut(s) | 45, 270 |
| MboII | GAAGA | 3 cut(s) | 125, 491, 761 |
| MhlI | GDGCHC | 1 cut(s) | 816 |
| MluCI | AATT | 5 cut(s) | 121, 189, 340, 346, 385 |
| MseI | TTAA | 1 cut(s) | 608 |
| MslI | CAYNNNNRTG | 3 cut(s) | 332, 642, 819 |
| MspR9I | CCNGG | 1 cut(s) | 552 |
| MvaI | CCWGG | 1 cut(s) | 552 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 415, 681 |
| NdeII | GATC | 2 cut(s) | 45, 270 |
| NlaIII | CATG | 5 cut(s) | 16, 151, 323, 380, 634 |
| NlaIV | GGNNCC | 3 cut(s) | 422, 456, 568 |
| NmuCI | GTSAC | 1 cut(s) | 172 |
| NspI | RCATGY | 1 cut(s) | 634 |
| PagI | TCATGA | 1 cut(s) | 376 |
| PciI | ACATGT | 1 cut(s) | 630 |
| PciSI | GCTCTTC | 1 cut(s) | 138 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 592 |
| PfeI | GAWTC | 2 cut(s) | 70, 647 |
| PmaCI | CACGTG | 2 cut(s) | 509, 527 |
| PmlI | CACGTG | 2 cut(s) | 509, 527 |
| Ppu21I | YACGTR | 2 cut(s) | 509, 527 |
| PpuMI | RGGWCCY | 1 cut(s) | 718 |
| PscI | ACATGT | 1 cut(s) | 630 |
| PshAI | GACNNNNGTC | 1 cut(s) | 633 |
| PsiI | TTATAA | 2 cut(s) | 345, 390 |
| Psp5II | RGGWCCY | 1 cut(s) | 718 |
| Psp6I | CCWGG | 1 cut(s) | 550 |
| PspCI | CACGTG | 2 cut(s) | 509, 527 |
| PspGI | CCWGG | 1 cut(s) | 550 |
| PspN4I | GGNNCC | 3 cut(s) | 422, 456, 568 |
| PspPI | GGNCC | 3 cut(s) | 354, 455, 718 |
| PspPPI | RGGWCCY | 1 cut(s) | 718 |
| RsaI | GTAC | 1 cut(s) | 740 |
| RsaNI | GTAC | 1 cut(s) | 739 |
| RseI | CAYNNNNRTG | 3 cut(s) | 332, 642, 819 |
| SapI | GCTCTTC | 1 cut(s) | 138 |
| SaqAI | TTAA | 1 cut(s) | 608 |
| Sau3AI | GATC | 2 cut(s) | 45, 270 |
| Sau96I | GGNCC | 3 cut(s) | 354, 455, 718 |
| ScrFI | CCNGG | 1 cut(s) | 552 |
| SduI | GDGCHC | 1 cut(s) | 816 |
| SfaNI | GCATC | 2 cut(s) | 43, 811 |
| SfcI | CTRYAG | 2 cut(s) | 140, 306 |
| SinI | GGWCC | 2 cut(s) | 455, 718 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 332, 642, 819 |
| Sse9I | AATT | 5 cut(s) | 121, 189, 340, 346, 385 |
| SsiI | CCGC | 3 cut(s) | 247, 418, 466 |
| SspMI | CTAG | 1 cut(s) | 692 |
| StyD4I | CCNGG | 1 cut(s) | 550 |
| TaaI | ACNGT | 1 cut(s) | 144 |
| TaiI | ACGT | 3 cut(s) | 511, 529, 598 |
| TaqI | TCGA | 2 cut(s) | 44, 640 |
| TasI | AATT | 5 cut(s) | 121, 189, 340, 346, 385 |
| TfiI | GAWTC | 2 cut(s) | 70, 647 |
| Tru1I | TTAA | 1 cut(s) | 608 |
| Tru9I | TTAA | 1 cut(s) | 608 |
| TscAI | CASTG | 1 cut(s) | 256 |
| TseFI | GTSAC | 1 cut(s) | 172 |
| Tsp45I | GTSAC | 1 cut(s) | 172 |
| TspDTI | ATGAA | 2 cut(s) | 272, 365 |
| TspGWI | ACGGA | 1 cut(s) | 283 |
| TspRI | CASTG | 1 cut(s) | 256 |
| VneI | GTGCAC | 1 cut(s) | 812 |
| VpaK11BI | GGWCC | 2 cut(s) | 455, 718 |
| XceI | RCATGY | 1 cut(s) | 634 |
| XspI | CTAG | 1 cut(s) | 692 |