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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 729 |
| AccB1I | GGYRCC | 2 cut(s) | 684, 791 |
| AccIII | TCCGGA | 1 cut(s) | 649 |
| AciI | CCGC | 2 cut(s) | 79, 933 |
| AclWI | GGATC | 1 cut(s) | 621 |
| AcoI | YGGCCR | 1 cut(s) | 778 |
| AcyI | GRCGYC | 2 cut(s) | 685, 792 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 680, 740, 894 |
| AflIII | ACRYGT | 1 cut(s) | 60 |
| AgsI | TTSAA | 3 cut(s) | 149, 166, 829 |
| AjnI | CCWGG | 2 cut(s) | 105, 129 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 288, 320 |
| AluBI | AGCT | 5 cut(s) | 155, 161, 562, 914, 965 |
| AluI | AGCT | 5 cut(s) | 155, 161, 562, 914, 965 |
| Alw21I | GWGCWC | 2 cut(s) | 564, 916 |
| Alw26I | GTCTC | 1 cut(s) | 292 |
| AlwI | GGATC | 1 cut(s) | 621 |
| Ama87I | CYCGRG | 1 cut(s) | 119 |
| Aor13HI | TCCGGA | 1 cut(s) | 649 |
| AoxI | GGCC | 2 cut(s) | 93, 778 |
| ApeKI | GCWGC | 1 cut(s) | 179 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 405 |
| AspLEI | GCGC | 3 cut(s) | 671, 687, 794 |
| AspS9I | GGNCC | 2 cut(s) | 543, 731 |
| AsuHPI | GGTGA | 3 cut(s) | 211, 380, 922 |
| AvaI | CYCGRG | 1 cut(s) | 119 |
| AvaII | GGWCC | 2 cut(s) | 543, 731 |
| BaeGI | GKGCMC | 1 cut(s) | 901 |
| BalI | TGGCCA | 1 cut(s) | 780 |
| BanI | GGYRCC | 2 cut(s) | 684, 791 |
| BanII | GRGCYC | 2 cut(s) | 564, 916 |
| BauI | CACGAG | 1 cut(s) | 915 |
| BbsI | GAAGAC | 2 cut(s) | 273, 476 |
| Bbv12I | GWGCWC | 2 cut(s) | 564, 916 |
| BbvI | GCAGC | 1 cut(s) | 191 |
| BccI | CCATC | 4 cut(s) | 342, 496, 497, 819 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 515, 549 |
| BciT130I | CCWGG | 2 cut(s) | 107, 131 |
| BciVI | GTATCC | 3 cut(s) | 103, 706, 895 |
| BcoDI | GTCTC | 1 cut(s) | 292 |
| BfaI | CTAG | 3 cut(s) | 126, 338, 1001 |
| BfoI | RGCGCY | 2 cut(s) | 688, 795 |
| BfuI | GTATCC | 3 cut(s) | 103, 706, 895 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 188 |
| BisI | GCNGC | 1 cut(s) | 180 |
| BlsI | GCNGC | 1 cut(s) | 181 |
| Bme1390I | CCNGG | 2 cut(s) | 107, 131 |
| Bme18I | GGWCC | 2 cut(s) | 543, 731 |
| BmeT110I | CYCGRG | 1 cut(s) | 119 |
| BmgT120I | GGNCC | 2 cut(s) | 543, 731 |
| BmiI | GGNNCC | 3 cut(s) | 571, 686, 793 |
| BmrFI | CCNGG | 2 cut(s) | 107, 131 |
| BpiI | GAAGAC | 2 cut(s) | 273, 476 |
| BpmI | CTGGAG | 1 cut(s) | 227 |
| BpuEI | CTTGAG | 2 cut(s) | 74, 141 |
| Bsa29I | ATCGAT | 1 cut(s) | 525 |
| BsaHI | GRCGYC | 2 cut(s) | 685, 792 |
| BsaI | GGTCTC | 1 cut(s) | 292 |
| BsaWI | WCCGGW | 2 cut(s) | 365, 649 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 347, 377 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 680, 740, 894 |
| Bse1I | ACTGG | 2 cut(s) | 49, 244 |
| BseAI | TCCGGA | 1 cut(s) | 649 |
| BseBI | CCWGG | 2 cut(s) | 107, 131 |
| BseCI | ATCGAT | 1 cut(s) | 525 |
| BseGI | GGATG | 3 cut(s) | 210, 238, 600 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 680, 740, 894 |
| BseMII | CTCAG | 1 cut(s) | 843 |
| BseNI | ACTGG | 2 cut(s) | 49, 244 |
| BseSI | GKGCMC | 1 cut(s) | 901 |
| BseXI | GCAGC | 1 cut(s) | 191 |
| BshFI | GGCC | 2 cut(s) | 95, 780 |
| BshNI | GGYRCC | 2 cut(s) | 684, 791 |
| BshVI | ATCGAT | 1 cut(s) | 525 |
| BsiHKAI | GWGCWC | 2 cut(s) | 564, 916 |
| BsiHKCI | CYCGRG | 1 cut(s) | 119 |
| BsiSI | CCGG | 3 cut(s) | 366, 537, 650 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 680, 740, 894 |
| BsmAI | GTCTC | 1 cut(s) | 292 |
| BsnI | GGCC | 2 cut(s) | 95, 780 |
| Bso31I | GGTCTC | 1 cut(s) | 292 |
| BsoBI | CYCGRG | 1 cut(s) | 119 |
| Bsp1286I | GDGCHC | 3 cut(s) | 564, 901, 916 |
| Bsp13I | TCCGGA | 1 cut(s) | 649 |
| Bsp143I | GATC | 5 cut(s) | 444, 626, 889, 985, 997 |
| BspACI | CCGC | 2 cut(s) | 79, 933 |
| BspANI | GGCC | 2 cut(s) | 95, 780 |
| BspCNI | CTCAG | 1 cut(s) | 844 |
| BspDI | ATCGAT | 1 cut(s) | 525 |
| BspEI | TCCGGA | 1 cut(s) | 649 |
| BspLI | GGNNCC | 3 cut(s) | 571, 686, 793 |
| BspPI | GGATC | 1 cut(s) | 621 |
| BspT107I | GGYRCC | 2 cut(s) | 684, 791 |
| BspTNI | GGTCTC | 1 cut(s) | 292 |
| BsrI | ACTGG | 2 cut(s) | 49, 244 |
| BssMI | GATC | 5 cut(s) | 444, 626, 889, 985, 997 |
| BssNI | GRCGYC | 2 cut(s) | 685, 792 |
| BssSI | CACGAG | 1 cut(s) | 915 |
| Bst2BI | CACGAG | 1 cut(s) | 915 |
| Bst2UI | CCWGG | 2 cut(s) | 107, 131 |
| Bst4CI | ACNGT | 2 cut(s) | 145, 451 |
| BstACI | GRCGYC | 2 cut(s) | 685, 792 |
| BstDEI | CTNAG | 4 cut(s) | 510, 675, 707, 852 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 678 |
| BstF5I | GGATG | 3 cut(s) | 210, 238, 600 |
| BstH2I | RGCGCY | 2 cut(s) | 688, 795 |
| BstHHI | GCGC | 3 cut(s) | 671, 687, 794 |
| BstKTI | GATC | 5 cut(s) | 447, 629, 892, 988, 1000 |
| BstMAI | GTCTC | 1 cut(s) | 292 |
| BstMBI | GATC | 5 cut(s) | 444, 626, 889, 985, 997 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 167, 176, 188, 691, 830, 941, 962 |
| BstNI | CCWGG | 2 cut(s) | 107, 131 |
| BstNSI | RCATGY | 2 cut(s) | 64, 139 |
| BstSCI | CCNGG | 2 cut(s) | 105, 129 |
| BstSLI | GKGCMC | 1 cut(s) | 901 |
| BstV1I | GCAGC | 1 cut(s) | 191 |
| BstV2I | GAAGAC | 2 cut(s) | 273, 476 |
| BstX2I | RGATCY | 1 cut(s) | 626 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 788 |
| BstYI | RGATCY | 1 cut(s) | 626 |
| Bsu15I | ATCGAT | 1 cut(s) | 525 |
| BsuI | GTATCC | 3 cut(s) | 103, 706, 895 |
| BsuRI | GGCC | 2 cut(s) | 95, 780 |
| BsuTUI | ATCGAT | 1 cut(s) | 525 |
| BtgZI | GCGATG | 1 cut(s) | 470 |
| BtsCI | GGATG | 3 cut(s) | 210, 238, 600 |
| CfoI | GCGC | 3 cut(s) | 671, 687, 794 |
| Cfr13I | GGNCC | 2 cut(s) | 543, 731 |
| ClaI | ATCGAT | 1 cut(s) | 525 |
| CseI | GACGC | 1 cut(s) | 830 |
| CviAII | CATG | 6 cut(s) | 61, 136, 325, 574, 593, 782 |
| DdeI | CTNAG | 4 cut(s) | 510, 675, 707, 852 |
| DinI | GGCGCC | 2 cut(s) | 686, 793 |
| DpnI | GATC | 5 cut(s) | 446, 628, 891, 987, 999 |
| DpnII | GATC | 5 cut(s) | 444, 626, 889, 985, 997 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 729 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 729 |
| EaeI | YGGCCR | 1 cut(s) | 778 |
| EciI | GGCGGA | 1 cut(s) | 68 |
| Ecl136II | GAGCTC | 2 cut(s) | 562, 914 |
| Eco24I | GRGCYC | 2 cut(s) | 564, 916 |
| Eco31I | GGTCTC | 1 cut(s) | 292 |
| Eco32I | GATATC | 1 cut(s) | 56 |
| Eco47I | GGWCC | 2 cut(s) | 543, 731 |
| Eco53kI | GAGCTC | 2 cut(s) | 562, 914 |
| Eco88I | CYCGRG | 1 cut(s) | 119 |
| EcoICRI | GAGCTC | 2 cut(s) | 562, 914 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 678 |
| EcoRII | CCWGG | 2 cut(s) | 105, 129 |
| EcoRV | GATATC | 1 cut(s) | 56 |
| EcoT38I | GRGCYC | 2 cut(s) | 564, 916 |
| EgeI | GGCGCC | 2 cut(s) | 686, 793 |
| EheI | GGCGCC | 2 cut(s) | 686, 793 |
| FaeI | CATG | 6 cut(s) | 64, 139, 328, 577, 596, 785 |
| FatI | CATG | 6 cut(s) | 60, 135, 324, 573, 592, 781 |
| FauNDI | CATATG | 1 cut(s) | 228 |
| Fnu4HI | GCNGC | 1 cut(s) | 180 |
| FokI | GGATG | 3 cut(s) | 197, 245, 587 |
| FriOI | GRGCYC | 2 cut(s) | 564, 916 |
| Fsp4HI | GCNGC | 1 cut(s) | 180 |
| FspBI | CTAG | 3 cut(s) | 126, 338, 1001 |
| GlaI | GCGC | 3 cut(s) | 670, 686, 793 |
| GluI | GCNGC | 1 cut(s) | 180 |
| GsuI | CTGGAG | 1 cut(s) | 227 |
| HaeII | RGCGCY | 2 cut(s) | 688, 795 |
| HaeIII | GGCC | 2 cut(s) | 95, 780 |
| HapII | CCGG | 3 cut(s) | 366, 537, 650 |
| HgaI | GACGC | 1 cut(s) | 830 |
| HhaI | GCGC | 3 cut(s) | 671, 687, 794 |
| Hin1I | GRCGYC | 2 cut(s) | 685, 792 |
| Hin1II | CATG | 6 cut(s) | 64, 139, 328, 577, 596, 785 |
| Hin6I | GCGC | 3 cut(s) | 669, 685, 792 |
| HinP1I | GCGC | 3 cut(s) | 669, 685, 792 |
| HincII | GTYRAC | 1 cut(s) | 746 |
| HindII | GTYRAC | 1 cut(s) | 746 |
| HindIII | AAGCTT | 1 cut(s) | 159 |
| HinfI | GANTC | 9 cut(s) | 102, 115, 220, 236, 320, 472, 522, 653, 848 |
| HpaII | CCGG | 3 cut(s) | 366, 537, 650 |
| HphI | GGTGA | 3 cut(s) | 211, 380, 922 |
| Hpy166II | GTNNAC | 1 cut(s) | 746 |
| Hpy188I | TCNGA | 3 cut(s) | 400, 853, 889 |
| Hpy8I | GTNNAC | 1 cut(s) | 746 |
| HpyAV | CCTTC | 1 cut(s) | 493 |
| HpyCH4III | ACNGT | 2 cut(s) | 145, 451 |
| HpyCH4IV | ACGT | 1 cut(s) | 724 |
| HpyCH4V | TGCA | 1 cut(s) | 497 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 167, 176, 188, 691, 830, 941, 962 |
| HpyF3I | CTNAG | 4 cut(s) | 510, 675, 707, 852 |
| HpySE526I | ACGT | 1 cut(s) | 724 |
| Hsp92I | GRCGYC | 2 cut(s) | 685, 792 |
| Hsp92II | CATG | 6 cut(s) | 64, 139, 328, 577, 596, 785 |
| HspAI | GCGC | 3 cut(s) | 669, 685, 792 |
| KasI | GGCGCC | 2 cut(s) | 684, 791 |
| Kpn2I | TCCGGA | 1 cut(s) | 649 |
| Kzo9I | GATC | 5 cut(s) | 444, 626, 889, 985, 997 |
| LmnI | GCTCC | 5 cut(s) | 34, 246, 368, 559, 569 |
| Lsp1109I | GCAGC | 1 cut(s) | 191 |
| MaeI | CTAG | 3 cut(s) | 126, 338, 1001 |
| MaeII | ACGT | 1 cut(s) | 724 |
| MaeIII | GTNAC | 4 cut(s) | 5, 317, 529, 928 |
| MalI | GATC | 5 cut(s) | 446, 628, 891, 987, 999 |
| MboI | GATC | 5 cut(s) | 444, 626, 889, 985, 997 |
| MboII | GAAGA | 8 cut(s) | 275, 278, 308, 481, 622, 932, 995, 1004 |
| MflI | RGATCY | 1 cut(s) | 626 |
| MhlI | GDGCHC | 3 cut(s) | 564, 901, 916 |
| MlsI | TGGCCA | 1 cut(s) | 780 |
| MluCI | AATT | 5 cut(s) | 17, 428, 619, 658, 924 |
| MluNI | TGGCCA | 1 cut(s) | 780 |
| Mly113I | GGCGCC | 2 cut(s) | 685, 792 |
| MlyI | GAGTC | 5 cut(s) | 214, 230, 314, 466, 857 |
| MnlI | CCTC | 7 cut(s) | 368, 674, 734, 754, 758, 784, 846 |
| Mox20I | TGGCCA | 1 cut(s) | 780 |
| MroI | TCCGGA | 1 cut(s) | 649 |
| MroXI | GAANNNNTTC | 1 cut(s) | 405 |
| MscI | TGGCCA | 1 cut(s) | 780 |
| MseI | TTAA | 3 cut(s) | 185, 414, 422 |
| MslI | CAYNNNNRTG | 5 cut(s) | 215, 231, 605, 786, 816 |
| Msp20I | TGGCCA | 1 cut(s) | 780 |
| MspI | CCGG | 3 cut(s) | 366, 537, 650 |
| MspR9I | CCNGG | 2 cut(s) | 107, 131 |
| MvaI | CCWGG | 2 cut(s) | 107, 131 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 167, 176, 188, 691, 830, 941, 962 |
| NarI | GGCGCC | 2 cut(s) | 685, 792 |
| NdeI | CATATG | 1 cut(s) | 228 |
| NdeII | GATC | 5 cut(s) | 444, 626, 889, 985, 997 |
| NlaIII | CATG | 6 cut(s) | 64, 139, 328, 577, 596, 785 |
| NlaIV | GGNNCC | 3 cut(s) | 571, 686, 793 |
| NmuCI | GTSAC | 2 cut(s) | 317, 928 |
| NspI | RCATGY | 2 cut(s) | 64, 139 |
| PaeR7I | CTCGAG | 1 cut(s) | 119 |
| PciI | ACATGT | 1 cut(s) | 60 |
| PdmI | GAANNNNTTC | 1 cut(s) | 405 |
| PfeI | GAWTC | 4 cut(s) | 102, 115, 522, 653 |
| PfoI | TCCNGGA | 1 cut(s) | 105 |
| PkrI | GCNGC | 1 cut(s) | 181 |
| PleI | GAGTC | 5 cut(s) | 214, 230, 314, 466, 856 |
| PluTI | GGCGCC | 2 cut(s) | 688, 795 |
| PpsI | GAGTC | 5 cut(s) | 214, 230, 314, 466, 856 |
| PscI | ACATGT | 1 cut(s) | 60 |
| Psp124BI | GAGCTC | 2 cut(s) | 564, 916 |
| Psp6I | CCWGG | 2 cut(s) | 105, 129 |
| PspGI | CCWGG | 2 cut(s) | 105, 129 |
| PspN4I | GGNNCC | 3 cut(s) | 571, 686, 793 |
| PspPI | GGNCC | 2 cut(s) | 543, 731 |
| PsuI | RGATCY | 1 cut(s) | 626 |
| RseI | CAYNNNNRTG | 5 cut(s) | 215, 231, 605, 786, 816 |
| SacI | GAGCTC | 2 cut(s) | 564, 916 |
| SaqAI | TTAA | 3 cut(s) | 185, 414, 422 |
| SatI | GCNGC | 1 cut(s) | 180 |
| Sau3AI | GATC | 5 cut(s) | 444, 626, 889, 985, 997 |
| Sau96I | GGNCC | 2 cut(s) | 543, 731 |
| SchI | GAGTC | 5 cut(s) | 214, 230, 314, 466, 857 |
| ScrFI | CCNGG | 2 cut(s) | 107, 131 |
| SduI | GDGCHC | 3 cut(s) | 564, 901, 916 |
| SfoI | GGCGCC | 2 cut(s) | 686, 793 |
| Sfr274I | CTCGAG | 1 cut(s) | 119 |
| SinI | GGWCC | 2 cut(s) | 543, 731 |
| SlaI | CTCGAG | 1 cut(s) | 119 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 215, 231, 605, 786, 816 |
| SmlI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| SmoI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| Sse9I | AATT | 5 cut(s) | 17, 428, 619, 658, 924 |
| SsiI | CCGC | 2 cut(s) | 79, 933 |
| SspDI | GGCGCC | 2 cut(s) | 684, 791 |
| SspMI | CTAG | 3 cut(s) | 126, 338, 1001 |
| SstI | GAGCTC | 2 cut(s) | 564, 916 |
| StyD4I | CCNGG | 2 cut(s) | 105, 129 |
| TaaI | ACNGT | 2 cut(s) | 145, 451 |
| TaiI | ACGT | 1 cut(s) | 727 |
| TaqI | TCGA | 6 cut(s) | 120, 294, 520, 525, 623, 874 |
| TasI | AATT | 5 cut(s) | 17, 428, 619, 658, 924 |
| TfiI | GAWTC | 4 cut(s) | 102, 115, 522, 653 |
| Tru1I | TTAA | 3 cut(s) | 185, 414, 422 |
| Tru9I | TTAA | 3 cut(s) | 185, 414, 422 |
| TseFI | GTSAC | 2 cut(s) | 317, 928 |
| TseI | GCWGC | 1 cut(s) | 179 |
| Tsp45I | GTSAC | 2 cut(s) | 317, 928 |
| TspDTI | ATGAA | 4 cut(s) | 272, 276, 590, 609 |
| TspGWI | ACGGA | 3 cut(s) | 21, 556, 619 |
| VpaK11BI | GGWCC | 2 cut(s) | 543, 731 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 678 |
| XbaI | TCTAGA | 1 cut(s) | 1000 |
| XceI | RCATGY | 2 cut(s) | 64, 139 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 103 |
| XhoI | CTCGAG | 1 cut(s) | 119 |
| XmnI | GAANNNNTTC | 1 cut(s) | 405 |
| XspI | CTAG | 3 cut(s) | 126, 338, 1001 |