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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 365, 386 |
| AciI | CCGC | 1 cut(s) | 410 |
| AclWI | GGATC | 1 cut(s) | 475 |
| AcuI | CTGAAG | 1 cut(s) | 642 |
| AcvI | CACGTG | 2 cut(s) | 308, 326 |
| AdeI | CACNNNGTG | 1 cut(s) | 311 |
| AfaI | GTAC | 1 cut(s) | 560 |
| AfeI | AGCGCT | 1 cut(s) | 74 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 198, 327, 400 |
| AflIII | ACRYGT | 2 cut(s) | 305, 323 |
| AgsI | TTSAA | 6 cut(s) | 112, 119, 148, 487, 519, 616 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 215 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 60, 92 |
| AluBI | AGCT | 4 cut(s) | 52, 176, 232, 515 |
| AluI | AGCT | 4 cut(s) | 52, 176, 232, 515 |
| Alw21I | GWGCWC | 1 cut(s) | 421 |
| Alw26I | GTCTC | 1 cut(s) | 429 |
| Alw44I | GTGCAC | 1 cut(s) | 417 |
| AlwI | GGATC | 1 cut(s) | 475 |
| Aor51HI | AGCGCT | 1 cut(s) | 74 |
| ApaLI | GTGCAC | 1 cut(s) | 417 |
| ApeKI | GCWGC | 1 cut(s) | 644 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 177 |
| AspLEI | GCGC | 1 cut(s) | 75 |
| AspS9I | GGNCC | 1 cut(s) | 538 |
| AsuHPI | GGTGA | 1 cut(s) | 592 |
| AvaII | GGWCC | 1 cut(s) | 538 |
| AxyI | CCTNAGG | 1 cut(s) | 542 |
| BaeGI | GKGCMC | 1 cut(s) | 421 |
| BanI | GGYRCC | 2 cut(s) | 365, 386 |
| BbrPI | CACGTG | 2 cut(s) | 308, 326 |
| Bbv12I | GWGCWC | 1 cut(s) | 421 |
| BbvI | GCAGC | 1 cut(s) | 656 |
| BccI | CCATC | 1 cut(s) | 575 |
| BciVI | GTATCC | 2 cut(s) | 295, 356 |
| BcoDI | GTCTC | 1 cut(s) | 429 |
| BfaI | CTAG | 4 cut(s) | 65, 351, 399, 512 |
| BfoI | RGCGCY | 1 cut(s) | 76 |
| BfuI | GTATCC | 2 cut(s) | 295, 356 |
| BisI | GCNGC | 1 cut(s) | 645 |
| BlsI | GCNGC | 1 cut(s) | 646 |
| Bme18I | GGWCC | 1 cut(s) | 538 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 215 |
| BmgT120I | GGNCC | 1 cut(s) | 538 |
| BmiI | GGNNCC | 3 cut(s) | 367, 388, 539 |
| BmsI | GCATC | 1 cut(s) | 631 |
| BpuEI | CTTGAG | 1 cut(s) | 272 |
| BsaAI | YACGTR | 2 cut(s) | 308, 326 |
| BsaBI | GATNNNNATC | 1 cut(s) | 594 |
| BsaJI | CCNNGG | 1 cut(s) | 369 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 14, 44, 322, 352 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 198, 327, 400 |
| Bse21I | CCTNAGG | 1 cut(s) | 542 |
| Bse3DI | GCAATG | 2 cut(s) | 88, 497 |
| Bse8I | GATNNNNATC | 1 cut(s) | 594 |
| BseDI | CCNNGG | 1 cut(s) | 369 |
| BseGI | GGATG | 1 cut(s) | 646 |
| BseJI | GATNNNNATC | 1 cut(s) | 594 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 198, 327, 400 |
| BseMI | GCAATG | 2 cut(s) | 88, 497 |
| BseMII | CTCAG | 2 cut(s) | 28, 533 |
| BseRI | GAGGAG | 1 cut(s) | 89 |
| BseSI | GKGCMC | 1 cut(s) | 421 |
| BseXI | GCAGC | 1 cut(s) | 656 |
| BshNI | GGYRCC | 2 cut(s) | 365, 386 |
| BsiHKAI | GWGCWC | 1 cut(s) | 421 |
| BslFI | GGGAC | 1 cut(s) | 551 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 198, 327, 400 |
| BsmAI | GTCTC | 1 cut(s) | 429 |
| BsmFI | GGGAC | 1 cut(s) | 551 |
| BsmI | GAATGC | 1 cut(s) | 46 |
| Bsp1286I | GDGCHC | 1 cut(s) | 421 |
| Bsp143I | GATC | 2 cut(s) | 33, 467 |
| Bsp19I | CCATGG | 1 cut(s) | 369 |
| BspACI | CCGC | 1 cut(s) | 410 |
| BspCNI | CTCAG | 2 cut(s) | 27, 534 |
| BspLI | GGNNCC | 3 cut(s) | 367, 388, 539 |
| BspPI | GGATC | 1 cut(s) | 475 |
| BspQI | GCTCTTC | 2 cut(s) | 63, 183 |
| BspT107I | GGYRCC | 2 cut(s) | 365, 386 |
| BsrDI | GCAATG | 2 cut(s) | 88, 497 |
| BssECI | CCNNGG | 1 cut(s) | 369 |
| BssMI | GATC | 2 cut(s) | 33, 467 |
| BssT1I | CCWWGG | 1 cut(s) | 369 |
| Bst4CI | ACNGT | 1 cut(s) | 189 |
| Bst6I | CTCTTC | 2 cut(s) | 63, 183 |
| BstBAI | YACGTR | 2 cut(s) | 308, 326 |
| BstC8I | GCNNGC | 2 cut(s) | 410, 502 |
| BstDEI | CTNAG | 2 cut(s) | 14, 542 |
| BstDSI | CCRYGG | 1 cut(s) | 369 |
| BstF5I | GGATG | 1 cut(s) | 646 |
| BstH2I | RGCGCY | 1 cut(s) | 76 |
| BstHHI | GCGC | 1 cut(s) | 75 |
| BstKTI | GATC | 2 cut(s) | 36, 470 |
| BstMAI | GTCTC | 1 cut(s) | 429 |
| BstMBI | GATC | 2 cut(s) | 33, 467 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 501 |
| BstSLI | GKGCMC | 1 cut(s) | 421 |
| BstV1I | GCAGC | 1 cut(s) | 656 |
| Bsu36I | CCTNAGG | 1 cut(s) | 542 |
| BsuI | GTATCC | 2 cut(s) | 295, 356 |
| BtgI | CCRYGG | 1 cut(s) | 369 |
| BtsCI | GGATG | 1 cut(s) | 646 |
| Cac8I | GCNNGC | 2 cut(s) | 410, 502 |
| CfoI | GCGC | 1 cut(s) | 75 |
| Cfr13I | GGNCC | 1 cut(s) | 538 |
| Csp6I | GTAC | 1 cut(s) | 559 |
| CviAII | CATG | 2 cut(s) | 193, 370 |
| CviJI | RGCY | 5 cut(s) | 52, 176, 232, 269, 515 |
| CviKI_1 | RGCY | 5 cut(s) | 52, 176, 232, 269, 515 |
| CviQI | GTAC | 1 cut(s) | 559 |
| DdeI | CTNAG | 2 cut(s) | 14, 542 |
| DpnI | GATC | 2 cut(s) | 35, 469 |
| DpnII | GATC | 2 cut(s) | 33, 467 |
| DraIII | CACNNNGTG | 1 cut(s) | 311 |
| DriI | GACNNNNNGTC | 1 cut(s) | 215 |
| Eam1104I | CTCTTC | 2 cut(s) | 63, 183 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 215 |
| EarI | CTCTTC | 2 cut(s) | 63, 183 |
| Eco130I | CCWWGG | 1 cut(s) | 369 |
| Eco47I | GGWCC | 1 cut(s) | 538 |
| Eco47III | AGCGCT | 1 cut(s) | 74 |
| Eco57I | CTGAAG | 1 cut(s) | 642 |
| Eco72I | CACGTG | 2 cut(s) | 308, 326 |
| Eco81I | CCTNAGG | 1 cut(s) | 542 |
| EcoO109I | RGGNCCY | 1 cut(s) | 538 |
| EcoT14I | CCWWGG | 1 cut(s) | 369 |
| ErhI | CCWWGG | 1 cut(s) | 369 |
| FaeI | CATG | 2 cut(s) | 196, 373 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 546, 578 |
| FaqI | GGGAC | 1 cut(s) | 551 |
| FatI | CATG | 2 cut(s) | 192, 369 |
| FauI | CCCGC | 1 cut(s) | 417 |
| FauNDI | CATATG | 1 cut(s) | 532 |
| Fnu4HI | GCNGC | 1 cut(s) | 645 |
| FokI | GGATG | 1 cut(s) | 653 |
| Fsp4HI | GCNGC | 1 cut(s) | 645 |
| FspBI | CTAG | 4 cut(s) | 65, 351, 399, 512 |
| GlaI | GCGC | 1 cut(s) | 74 |
| GluI | GCNGC | 1 cut(s) | 645 |
| HaeII | RGCGCY | 1 cut(s) | 76 |
| HhaI | GCGC | 1 cut(s) | 75 |
| Hin1II | CATG | 2 cut(s) | 196, 373 |
| Hin6I | GCGC | 1 cut(s) | 73 |
| HinP1I | GCGC | 1 cut(s) | 73 |
| HinfI | GANTC | 1 cut(s) | 92 |
| HphI | GGTGA | 1 cut(s) | 592 |
| Hpy166II | GTNNAC | 3 cut(s) | 209, 419, 559 |
| Hpy188I | TCNGA | 2 cut(s) | 17, 172 |
| Hpy188III | TCNNGA | 2 cut(s) | 37, 519 |
| Hpy8I | GTNNAC | 3 cut(s) | 209, 419, 559 |
| HpyAV | CCTTC | 3 cut(s) | 106, 265, 272 |
| HpyCH4III | ACNGT | 1 cut(s) | 189 |
| HpyCH4IV | ACGT | 3 cut(s) | 307, 325, 415 |
| HpyCH4V | TGCA | 5 cut(s) | 44, 419, 495, 634, 644 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 501 |
| HpyF3I | CTNAG | 2 cut(s) | 14, 542 |
| HpySE526I | ACGT | 3 cut(s) | 307, 325, 415 |
| Hsp92II | CATG | 2 cut(s) | 196, 373 |
| HspAI | GCGC | 1 cut(s) | 73 |
| Kzo9I | GATC | 2 cut(s) | 33, 467 |
| LguI | GCTCTTC | 2 cut(s) | 63, 183 |
| LmnI | GCTCC | 1 cut(s) | 547 |
| LpnPI | CCDG | 4 cut(s) | 117, 228, 511, 554 |
| Lsp1109I | GCAGC | 1 cut(s) | 656 |
| LweI | GCATC | 1 cut(s) | 631 |
| MaeI | CTAG | 4 cut(s) | 65, 351, 399, 512 |
| MaeII | ACGT | 3 cut(s) | 307, 325, 415 |
| MaeIII | GTNAC | 1 cut(s) | 217 |
| MalI | GATC | 2 cut(s) | 35, 469 |
| MboI | GATC | 2 cut(s) | 33, 467 |
| MboII | GAAGA | 7 cut(s) | 80, 170, 581, 584, 587, 590, 635 |
| MfeI | CAATTG | 1 cut(s) | 471 |
| MhlI | GDGCHC | 1 cut(s) | 421 |
| MluCI | AATT | 5 cut(s) | 166, 234, 425, 471, 629 |
| MnlI | CCTC | 8 cut(s) | 107, 110, 192, 296, 326, 432, 499, 537 |
| MroXI | GAANNNNTTC | 1 cut(s) | 177 |
| MseI | TTAA | 1 cut(s) | 428 |
| MslI | CAYNNNNRTG | 4 cut(s) | 360, 447, 462, 639 |
| MunI | CAATTG | 1 cut(s) | 471 |
| Mva1269I | GAATGC | 1 cut(s) | 46 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 501 |
| NcoI | CCATGG | 1 cut(s) | 369 |
| NdeI | CATATG | 1 cut(s) | 532 |
| NdeII | GATC | 2 cut(s) | 33, 467 |
| NlaIII | CATG | 2 cut(s) | 196, 373 |
| NlaIV | GGNNCC | 3 cut(s) | 367, 388, 539 |
| NmuCI | GTSAC | 1 cut(s) | 217 |
| PciSI | GCTCTTC | 2 cut(s) | 63, 183 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 412 |
| PctI | GAATGC | 1 cut(s) | 46 |
| PdmI | GAANNNNTTC | 1 cut(s) | 177 |
| PfeI | GAWTC | 1 cut(s) | 92 |
| PkrI | GCNGC | 1 cut(s) | 646 |
| PmaCI | CACGTG | 2 cut(s) | 308, 326 |
| PmlI | CACGTG | 2 cut(s) | 308, 326 |
| Ppu21I | YACGTR | 2 cut(s) | 308, 326 |
| PpuMI | RGGWCCY | 1 cut(s) | 538 |
| Psp5II | RGGWCCY | 1 cut(s) | 538 |
| PspCI | CACGTG | 2 cut(s) | 308, 326 |
| PspN4I | GGNNCC | 3 cut(s) | 367, 388, 539 |
| PspPI | GGNCC | 1 cut(s) | 538 |
| PspPPI | RGGWCCY | 1 cut(s) | 538 |
| RsaI | GTAC | 1 cut(s) | 560 |
| RsaNI | GTAC | 1 cut(s) | 559 |
| RseI | CAYNNNNRTG | 4 cut(s) | 360, 447, 462, 639 |
| SapI | GCTCTTC | 2 cut(s) | 63, 183 |
| SaqAI | TTAA | 1 cut(s) | 428 |
| SatI | GCNGC | 1 cut(s) | 645 |
| Sau3AI | GATC | 2 cut(s) | 33, 467 |
| Sau96I | GGNCC | 1 cut(s) | 538 |
| SduI | GDGCHC | 1 cut(s) | 421 |
| SfaNI | GCATC | 1 cut(s) | 631 |
| SinI | GGWCC | 1 cut(s) | 538 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 360, 447, 462, 639 |
| SmlI | CTYRAG | 1 cut(s) | 287 |
| SmoI | CTYRAG | 1 cut(s) | 287 |
| Sse9I | AATT | 5 cut(s) | 166, 234, 425, 471, 629 |
| SsiI | CCGC | 1 cut(s) | 410 |
| SspMI | CTAG | 4 cut(s) | 65, 351, 399, 512 |
| StyI | CCWWGG | 1 cut(s) | 369 |
| TaaI | ACNGT | 1 cut(s) | 189 |
| TaiI | ACGT | 3 cut(s) | 310, 328, 418 |
| TaqI | TCGA | 1 cut(s) | 32 |
| TasI | AATT | 5 cut(s) | 166, 234, 425, 471, 629 |
| TfiI | GAWTC | 1 cut(s) | 92 |
| Tru1I | TTAA | 1 cut(s) | 428 |
| Tru9I | TTAA | 1 cut(s) | 428 |
| TseFI | GTSAC | 1 cut(s) | 217 |
| TseI | GCWGC | 1 cut(s) | 644 |
| Tsp45I | GTSAC | 1 cut(s) | 217 |
| TspDTI | ATGAA | 1 cut(s) | 642 |
| VneI | GTGCAC | 1 cut(s) | 417 |
| VpaK11BI | GGWCC | 1 cut(s) | 538 |
| XmnI | GAANNNNTTC | 1 cut(s) | 177 |
| XspI | CTAG | 4 cut(s) | 65, 351, 399, 512 |