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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 16 |
| AccI | GTMKAC | 1 cut(s) | 34 |
| AciI | CCGC | 3 cut(s) | 98, 120, 526 |
| AclWI | GGATC | 1 cut(s) | 789 |
| AcoI | YGGCCR | 2 cut(s) | 204, 239 |
| AcsI | RAATTY | 2 cut(s) | 232, 596 |
| AfaI | GTAC | 1 cut(s) | 416 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 166, 202 |
| AgsI | TTSAA | 2 cut(s) | 250, 544 |
| AjiI | CACGTC | 1 cut(s) | 304 |
| AjnI | CCWGG | 1 cut(s) | 41 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 456, 488 |
| AluBI | AGCT | 6 cut(s) | 83, 137, 323, 329, 730, 740 |
| AluI | AGCT | 6 cut(s) | 83, 137, 323, 329, 730, 740 |
| Alw21I | GWGCWC | 1 cut(s) | 732 |
| Alw26I | GTCTC | 2 cut(s) | 460, 664 |
| AlwI | GGATC | 1 cut(s) | 789 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 64, 86 |
| Ama87I | CYCGRG | 1 cut(s) | 287 |
| AoxI | GGCC | 7 cut(s) | 25, 154, 168, 204, 239, 261, 290 |
| ApeKI | GCWGC | 5 cut(s) | 89, 111, 347, 528, 701 |
| ApoI | RAATTY | 2 cut(s) | 232, 596 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 573 |
| AspLEI | GCGC | 2 cut(s) | 94, 116 |
| AspS9I | GGNCC | 2 cut(s) | 26, 290 |
| AvaI | CYCGRG | 1 cut(s) | 287 |
| BalI | TGGCCA | 1 cut(s) | 241 |
| BanII | GRGCYC | 1 cut(s) | 732 |
| BbsI | GAAGAC | 2 cut(s) | 441, 644 |
| Bbv12I | GWGCWC | 1 cut(s) | 732 |
| BbvI | GCAGC | 5 cut(s) | 101, 123, 359, 515, 688 |
| BccI | CCATC | 5 cut(s) | 215, 260, 383, 510, 664 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 683, 717 |
| BciT130I | CCWGG | 1 cut(s) | 43 |
| BciVI | GTATCC | 1 cut(s) | 271 |
| BcoDI | GTCTC | 2 cut(s) | 460, 664 |
| BfaI | CTAG | 4 cut(s) | 129, 134, 294, 506 |
| BfmI | CTRYAG | 4 cut(s) | 87, 109, 685, 702 |
| BfoI | RGCGCY | 2 cut(s) | 95, 117 |
| BfuAI | ACCTGC | 1 cut(s) | 16 |
| BfuI | GTATCC | 1 cut(s) | 271 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 356 |
| BisI | GCNGC | 6 cut(s) | 90, 112, 348, 526, 529, 702 |
| BlsI | GCNGC | 6 cut(s) | 91, 113, 349, 527, 530, 703 |
| Bme1390I | CCNGG | 1 cut(s) | 43 |
| BmeT110I | CYCGRG | 1 cut(s) | 287 |
| BmgBI | CACGTC | 1 cut(s) | 304 |
| BmgT120I | GGNCC | 2 cut(s) | 26, 290 |
| BmrFI | CCNGG | 1 cut(s) | 43 |
| BmsI | GCATC | 2 cut(s) | 57, 262 |
| BpiI | GAAGAC | 2 cut(s) | 441, 644 |
| BpmI | CTGGAG | 3 cut(s) | 123, 172, 395 |
| BpuEI | CTTGAG | 2 cut(s) | 242, 309 |
| Bsa29I | ATCGAT | 1 cut(s) | 693 |
| BsaI | GGTCTC | 1 cut(s) | 460 |
| BsaJI | CCNNGG | 3 cut(s) | 22, 41, 798 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 166, 202 |
| Bse1I | ACTGG | 3 cut(s) | 160, 189, 412 |
| BseBI | CCWGG | 1 cut(s) | 43 |
| BseCI | ATCGAT | 1 cut(s) | 693 |
| BseDI | CCNNGG | 3 cut(s) | 22, 41, 798 |
| BseGI | GGATG | 3 cut(s) | 378, 406, 768 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 166, 202 |
| BseNI | ACTGG | 3 cut(s) | 160, 189, 412 |
| BseRI | GAGGAG | 1 cut(s) | 65 |
| BseXI | GCAGC | 5 cut(s) | 101, 123, 359, 515, 688 |
| BsgI | GTGCAG | 1 cut(s) | 50 |
| BshFI | GGCC | 7 cut(s) | 27, 156, 170, 206, 241, 263, 292 |
| BshVI | ATCGAT | 1 cut(s) | 693 |
| BsiHKAI | GWGCWC | 1 cut(s) | 732 |
| BsiHKCI | CYCGRG | 1 cut(s) | 287 |
| BsiSI | CCGG | 1 cut(s) | 203 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 166, 202 |
| BsmAI | GTCTC | 2 cut(s) | 460, 664 |
| BsmBI | CGTCTC | 1 cut(s) | 664 |
| BsnI | GGCC | 7 cut(s) | 27, 156, 170, 206, 241, 263, 292 |
| Bso31I | GGTCTC | 1 cut(s) | 460 |
| BsoBI | CYCGRG | 1 cut(s) | 287 |
| Bsp1286I | GDGCHC | 1 cut(s) | 732 |
| Bsp143I | GATC | 2 cut(s) | 612, 794 |
| BspACI | CCGC | 3 cut(s) | 98, 120, 526 |
| BspANI | GGCC | 7 cut(s) | 27, 156, 170, 206, 241, 263, 292 |
| BspDI | ATCGAT | 1 cut(s) | 693 |
| BspHI | TCATGA | 1 cut(s) | 724 |
| BspMAI | CTGCAG | 3 cut(s) | 91, 113, 706 |
| BspMI | ACCTGC | 1 cut(s) | 16 |
| BspPI | GGATC | 1 cut(s) | 789 |
| BspTNI | GGTCTC | 1 cut(s) | 460 |
| BsrI | ACTGG | 3 cut(s) | 160, 189, 412 |
| BssECI | CCNNGG | 3 cut(s) | 22, 41, 798 |
| BssMI | GATC | 2 cut(s) | 612, 794 |
| Bst2UI | CCWGG | 1 cut(s) | 43 |
| Bst4CI | ACNGT | 2 cut(s) | 151, 313 |
| BstC8I | GCNNGC | 1 cut(s) | 321 |
| BstDEI | CTNAG | 2 cut(s) | 352, 678 |
| BstDSI | CCRYGG | 1 cut(s) | 798 |
| BstF5I | GGATG | 3 cut(s) | 378, 406, 768 |
| BstH2I | RGCGCY | 2 cut(s) | 95, 117 |
| BstHHI | GCGC | 2 cut(s) | 94, 116 |
| BstKTI | GATC | 2 cut(s) | 615, 797 |
| BstMAI | GTCTC | 2 cut(s) | 460, 664 |
| BstMBI | GATC | 2 cut(s) | 612, 794 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 89, 111, 335, 344, 356, 365 |
| BstNI | CCWGG | 1 cut(s) | 43 |
| BstSCI | CCNGG | 1 cut(s) | 41 |
| BstSFI | CTRYAG | 4 cut(s) | 87, 109, 685, 702 |
| BstV1I | GCAGC | 5 cut(s) | 101, 123, 359, 515, 688 |
| BstV2I | GAAGAC | 2 cut(s) | 441, 644 |
| BstX2I | RGATCY | 1 cut(s) | 794 |
| BstYI | RGATCY | 1 cut(s) | 794 |
| Bsu15I | ATCGAT | 1 cut(s) | 693 |
| BsuI | GTATCC | 1 cut(s) | 271 |
| BsuRI | GGCC | 7 cut(s) | 27, 156, 170, 206, 241, 263, 292 |
| BsuTUI | ATCGAT | 1 cut(s) | 693 |
| BtgI | CCRYGG | 1 cut(s) | 798 |
| BtgZI | GCGATG | 1 cut(s) | 638 |
| BtrI | CACGTC | 1 cut(s) | 304 |
| BtsCI | GGATG | 3 cut(s) | 378, 406, 768 |
| BtsIMutI | CAGTG | 1 cut(s) | 196 |
| BveI | ACCTGC | 1 cut(s) | 16 |
| Cac8I | GCNNGC | 1 cut(s) | 321 |
| CaiI | CAGNNNCTG | 2 cut(s) | 64, 86 |
| CciI | TCATGA | 1 cut(s) | 724 |
| CfoI | GCGC | 2 cut(s) | 94, 116 |
| Cfr13I | GGNCC | 2 cut(s) | 26, 290 |
| ClaI | ATCGAT | 1 cut(s) | 693 |
| Csp6I | GTAC | 1 cut(s) | 415 |
| CviAII | CATG | 3 cut(s) | 620, 725, 761 |
| CviQI | GTAC | 1 cut(s) | 415 |
| DdeI | CTNAG | 2 cut(s) | 352, 678 |
| DpnI | GATC | 2 cut(s) | 614, 796 |
| DpnII | GATC | 2 cut(s) | 612, 794 |
| EaeI | YGGCCR | 2 cut(s) | 204, 239 |
| Ecl136II | GAGCTC | 1 cut(s) | 730 |
| Eco24I | GRGCYC | 1 cut(s) | 732 |
| Eco31I | GGTCTC | 1 cut(s) | 460 |
| Eco53kI | GAGCTC | 1 cut(s) | 730 |
| Eco88I | CYCGRG | 1 cut(s) | 287 |
| EcoICRI | GAGCTC | 1 cut(s) | 730 |
| EcoO109I | RGGNCCY | 1 cut(s) | 26 |
| EcoRI | GAATTC | 1 cut(s) | 596 |
| EcoRII | CCWGG | 1 cut(s) | 41 |
| EcoT38I | GRGCYC | 1 cut(s) | 732 |
| Esp3I | CGTCTC | 1 cut(s) | 664 |
| FaeI | CATG | 3 cut(s) | 623, 728, 764 |
| FatI | CATG | 3 cut(s) | 619, 724, 760 |
| FauI | CCCGC | 1 cut(s) | 127 |
| FauNDI | CATATG | 1 cut(s) | 396 |
| FblI | GTMKAC | 1 cut(s) | 34 |
| Fnu4HI | GCNGC | 6 cut(s) | 90, 112, 348, 526, 529, 702 |
| FokI | GGATG | 3 cut(s) | 365, 413, 755 |
| FriOI | GRGCYC | 1 cut(s) | 732 |
| Fsp4HI | GCNGC | 6 cut(s) | 90, 112, 348, 526, 529, 702 |
| FspBI | CTAG | 4 cut(s) | 129, 134, 294, 506 |
| GlaI | GCGC | 2 cut(s) | 93, 115 |
| GluI | GCNGC | 6 cut(s) | 90, 112, 348, 526, 529, 702 |
| GsuI | CTGGAG | 3 cut(s) | 123, 172, 395 |
| HaeII | RGCGCY | 2 cut(s) | 95, 117 |
| HaeIII | GGCC | 7 cut(s) | 27, 156, 170, 206, 241, 263, 292 |
| HapII | CCGG | 1 cut(s) | 203 |
| HhaI | GCGC | 2 cut(s) | 94, 116 |
| Hin1II | CATG | 3 cut(s) | 623, 728, 764 |
| Hin6I | GCGC | 2 cut(s) | 92, 114 |
| HinP1I | GCGC | 2 cut(s) | 92, 114 |
| HincII | GTYRAC | 1 cut(s) | 35 |
| HindII | GTYRAC | 1 cut(s) | 35 |
| HindIII | AAGCTT | 1 cut(s) | 327 |
| HinfI | GANTC | 7 cut(s) | 270, 283, 388, 404, 488, 640, 690 |
| HpaII | CCGG | 1 cut(s) | 203 |
| Hpy166II | GTNNAC | 1 cut(s) | 35 |
| Hpy188I | TCNGA | 1 cut(s) | 568 |
| Hpy188III | TCNNGA | 5 cut(s) | 299, 500, 554, 725, 792 |
| Hpy8I | GTNNAC | 1 cut(s) | 35 |
| HpyAV | CCTTC | 1 cut(s) | 438 |
| HpyCH4III | ACNGT | 2 cut(s) | 151, 313 |
| HpyCH4IV | ACGT | 2 cut(s) | 303, 480 |
| HpyCH4V | TGCA | 6 cut(s) | 48, 67, 89, 111, 665, 704 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 89, 111, 335, 344, 356, 365 |
| HpyF3I | CTNAG | 2 cut(s) | 352, 678 |
| HpySE526I | ACGT | 2 cut(s) | 303, 480 |
| Hsp92II | CATG | 3 cut(s) | 623, 728, 764 |
| HspAI | GCGC | 2 cut(s) | 92, 114 |
| Kzo9I | GATC | 2 cut(s) | 612, 794 |
| LmnI | GCTCC | 4 cut(s) | 88, 142, 414, 737 |
| Lsp1109I | GCAGC | 5 cut(s) | 101, 123, 359, 515, 688 |
| LweI | GCATC | 2 cut(s) | 57, 262 |
| MaeI | CTAG | 4 cut(s) | 129, 134, 294, 506 |
| MaeII | ACGT | 2 cut(s) | 303, 480 |
| MaeIII | GTNAC | 3 cut(s) | 191, 485, 748 |
| MalI | GATC | 2 cut(s) | 614, 796 |
| MboI | GATC | 2 cut(s) | 612, 794 |
| MboII | GAAGA | 5 cut(s) | 443, 446, 476, 649, 790 |
| MflI | RGATCY | 1 cut(s) | 794 |
| MhlI | GDGCHC | 1 cut(s) | 732 |
| MlsI | TGGCCA | 1 cut(s) | 241 |
| MluCI | AATT | 3 cut(s) | 232, 596, 787 |
| MluNI | TGGCCA | 1 cut(s) | 241 |
| MlyI | GAGTC | 3 cut(s) | 382, 482, 634 |
| MnlI | CCTC | 6 cut(s) | 17, 83, 86, 105, 196, 349 |
| Mox20I | TGGCCA | 1 cut(s) | 241 |
| MroXI | GAANNNNTTC | 1 cut(s) | 573 |
| MscI | TGGCCA | 1 cut(s) | 241 |
| MseI | TTAA | 3 cut(s) | 216, 582, 590 |
| MslI | CAYNNNNRTG | 3 cut(s) | 383, 399, 773 |
| Msp20I | TGGCCA | 1 cut(s) | 241 |
| MspA1I | CMGCKG | 1 cut(s) | 528 |
| MspI | CCGG | 1 cut(s) | 203 |
| MspR9I | CCNGG | 1 cut(s) | 43 |
| MvaI | CCWGG | 1 cut(s) | 43 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 89, 111, 335, 344, 356, 365 |
| NdeI | CATATG | 1 cut(s) | 396 |
| NdeII | GATC | 2 cut(s) | 612, 794 |
| NlaIII | CATG | 3 cut(s) | 623, 728, 764 |
| NmuCI | GTSAC | 3 cut(s) | 191, 485, 748 |
| PagI | TCATGA | 1 cut(s) | 724 |
| PdmI | GAANNNNTTC | 1 cut(s) | 573 |
| PfeI | GAWTC | 4 cut(s) | 270, 283, 404, 690 |
| PkrI | GCNGC | 6 cut(s) | 91, 113, 349, 527, 530, 703 |
| PleI | GAGTC | 3 cut(s) | 382, 482, 634 |
| PpsI | GAGTC | 3 cut(s) | 382, 482, 634 |
| Psp124BI | GAGCTC | 1 cut(s) | 732 |
| Psp6I | CCWGG | 1 cut(s) | 41 |
| PspGI | CCWGG | 1 cut(s) | 41 |
| PspPI | GGNCC | 2 cut(s) | 26, 290 |
| PstI | CTGCAG | 3 cut(s) | 91, 113, 706 |
| PstNI | CAGNNNCTG | 2 cut(s) | 64, 86 |
| PsuI | RGATCY | 1 cut(s) | 794 |
| RsaI | GTAC | 1 cut(s) | 416 |
| RsaNI | GTAC | 1 cut(s) | 415 |
| RseI | CAYNNNNRTG | 3 cut(s) | 383, 399, 773 |
| SacI | GAGCTC | 1 cut(s) | 732 |
| SalI | GTCGAC | 1 cut(s) | 33 |
| SaqAI | TTAA | 3 cut(s) | 216, 582, 590 |
| SatI | GCNGC | 6 cut(s) | 90, 112, 348, 526, 529, 702 |
| Sau3AI | GATC | 2 cut(s) | 612, 794 |
| Sau96I | GGNCC | 2 cut(s) | 26, 290 |
| SchI | GAGTC | 3 cut(s) | 382, 482, 634 |
| ScrFI | CCNGG | 1 cut(s) | 43 |
| SduI | GDGCHC | 1 cut(s) | 732 |
| SfaNI | GCATC | 2 cut(s) | 57, 262 |
| SfcI | CTRYAG | 4 cut(s) | 87, 109, 685, 702 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 383, 399, 773 |
| SmlI | CTYRAG | 2 cut(s) | 257, 324 |
| SmoI | CTYRAG | 2 cut(s) | 257, 324 |
| Sse9I | AATT | 3 cut(s) | 232, 596, 787 |
| SsiI | CCGC | 3 cut(s) | 98, 120, 526 |
| SspMI | CTAG | 4 cut(s) | 129, 134, 294, 506 |
| SstI | GAGCTC | 1 cut(s) | 732 |
| StyD4I | CCNGG | 1 cut(s) | 41 |
| TaaI | ACNGT | 2 cut(s) | 151, 313 |
| TaiI | ACGT | 2 cut(s) | 306, 483 |
| TaqI | TCGA | 4 cut(s) | 34, 462, 693, 791 |
| TasI | AATT | 3 cut(s) | 232, 596, 787 |
| TauI | GCSGC | 1 cut(s) | 528 |
| TfiI | GAWTC | 4 cut(s) | 270, 283, 404, 690 |
| Tru1I | TTAA | 3 cut(s) | 216, 582, 590 |
| Tru9I | TTAA | 3 cut(s) | 216, 582, 590 |
| TscAI | CASTG | 1 cut(s) | 196 |
| TseFI | GTSAC | 3 cut(s) | 191, 485, 748 |
| TseI | GCWGC | 5 cut(s) | 89, 111, 347, 528, 701 |
| Tsp45I | GTSAC | 3 cut(s) | 191, 485, 748 |
| TspDTI | ATGAA | 4 cut(s) | 440, 444, 713, 758 |
| TspGWI | ACGGA | 2 cut(s) | 473, 787 |
| TspRI | CASTG | 1 cut(s) | 196 |
| XapI | RAATTY | 2 cut(s) | 232, 596 |
| XmiI | GTMKAC | 1 cut(s) | 34 |
| XmnI | GAANNNNTTC | 1 cut(s) | 573 |
| XspI | CTAG | 4 cut(s) | 129, 134, 294, 506 |