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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 241 |
| AccII | CGCG | 1 cut(s) | 280 |
| AccIII | TCCGGA | 1 cut(s) | 149 |
| AciI | CCGC | 2 cut(s) | 121, 172 |
| AclWI | GGATC | 2 cut(s) | 155, 168 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 107, 181 |
| AflIII | ACRYGT | 1 cut(s) | 154 |
| AgsI | TTSAA | 3 cut(s) | 51, 220, 295 |
| AjiI | CACGTC | 1 cut(s) | 155 |
| Alw21I | GWGCWC | 1 cut(s) | 100 |
| Alw44I | GTGCAC | 1 cut(s) | 96 |
| AlwI | GGATC | 2 cut(s) | 155, 168 |
| Ama87I | CYCGRG | 1 cut(s) | 262 |
| Aor13HI | TCCGGA | 1 cut(s) | 149 |
| AoxI | GGCC | 1 cut(s) | 53 |
| ApaLI | GTGCAC | 1 cut(s) | 96 |
| AseI | ATTAAT | 1 cut(s) | 75 |
| AspLEI | GCGC | 3 cut(s) | 114, 242, 282 |
| AspS9I | GGNCC | 1 cut(s) | 229 |
| AsuC2I | CCSGG | 2 cut(s) | 263, 264 |
| AsuHPI | GGTGA | 1 cut(s) | 94 |
| AvaI | CYCGRG | 1 cut(s) | 262 |
| AvaII | GGWCC | 1 cut(s) | 229 |
| BaeGI | GKGCMC | 1 cut(s) | 100 |
| BamHI | GGATCC | 1 cut(s) | 160 |
| Bbv12I | GWGCWC | 1 cut(s) | 100 |
| BceAI | ACGGC | 1 cut(s) | 267 |
| BcnI | CCSGG | 2 cut(s) | 263, 264 |
| Bme1390I | CCNGG | 2 cut(s) | 263, 264 |
| Bme18I | GGWCC | 1 cut(s) | 229 |
| BmeT110I | CYCGRG | 1 cut(s) | 262 |
| BmgBI | CACGTC | 1 cut(s) | 155 |
| BmgT120I | GGNCC | 1 cut(s) | 229 |
| BmiI | GGNNCC | 3 cut(s) | 125, 162, 231 |
| BmrFI | CCNGG | 2 cut(s) | 263, 264 |
| BmsI | GCATC | 1 cut(s) | 193 |
| BpuMI | CCSGG | 2 cut(s) | 263, 264 |
| BsaBI | GATNNNNATC | 1 cut(s) | 207 |
| BsaJI | CCNNGG | 2 cut(s) | 262, 263 |
| BsaWI | WCCGGW | 1 cut(s) | 149 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 107, 181 |
| Bse1I | ACTGG | 1 cut(s) | 56 |
| Bse8I | GATNNNNATC | 1 cut(s) | 207 |
| BseAI | TCCGGA | 1 cut(s) | 149 |
| BseDI | CCNNGG | 2 cut(s) | 262, 263 |
| BseGI | GGATG | 1 cut(s) | 208 |
| BseJI | GATNNNNATC | 1 cut(s) | 207 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 107, 181 |
| BseNI | ACTGG | 1 cut(s) | 56 |
| BseSI | GKGCMC | 1 cut(s) | 100 |
| Bsh1236I | CGCG | 1 cut(s) | 280 |
| BshFI | GGCC | 1 cut(s) | 55 |
| BsiHKAI | GWGCWC | 1 cut(s) | 100 |
| BsiHKCI | CYCGRG | 1 cut(s) | 262 |
| BsiSI | CCGG | 2 cut(s) | 150, 263 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 107, 181 |
| BsnI | GGCC | 1 cut(s) | 55 |
| BsoBI | CYCGRG | 1 cut(s) | 262 |
| Bsp1286I | GDGCHC | 1 cut(s) | 100 |
| Bsp13I | TCCGGA | 1 cut(s) | 149 |
| Bsp143I | GATC | 2 cut(s) | 160, 298 |
| BspACI | CCGC | 2 cut(s) | 121, 172 |
| BspANI | GGCC | 1 cut(s) | 55 |
| BspEI | TCCGGA | 1 cut(s) | 149 |
| BspFNI | CGCG | 1 cut(s) | 280 |
| BspLI | GGNNCC | 3 cut(s) | 125, 162, 231 |
| BspPI | GGATC | 2 cut(s) | 155, 168 |
| BsrI | ACTGG | 1 cut(s) | 56 |
| BssECI | CCNNGG | 2 cut(s) | 262, 263 |
| BssMI | GATC | 2 cut(s) | 160, 298 |
| BstDEI | CTNAG | 1 cut(s) | 302 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 105 |
| BstF5I | GGATG | 1 cut(s) | 208 |
| BstFNI | CGCG | 1 cut(s) | 280 |
| BstHHI | GCGC | 3 cut(s) | 114, 242, 282 |
| BstKTI | GATC | 2 cut(s) | 163, 301 |
| BstMBI | GATC | 2 cut(s) | 160, 298 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 118 |
| BstSCI | CCNGG | 2 cut(s) | 261, 262 |
| BstSLI | GKGCMC | 1 cut(s) | 100 |
| BstUI | CGCG | 1 cut(s) | 280 |
| BstX2I | RGATCY | 1 cut(s) | 160 |
| BstYI | RGATCY | 1 cut(s) | 160 |
| BsuRI | GGCC | 1 cut(s) | 55 |
| BtrI | CACGTC | 1 cut(s) | 155 |
| BtsCI | GGATG | 1 cut(s) | 208 |
| CfoI | GCGC | 3 cut(s) | 114, 242, 282 |
| Cfr13I | GGNCC | 1 cut(s) | 229 |
| Cfr9I | CCCGGG | 1 cut(s) | 262 |
| CviAII | CATG | 2 cut(s) | 20, 314 |
| CviJI | RGCY | 1 cut(s) | 55 |
| CviKI_1 | RGCY | 1 cut(s) | 55 |
| DdeI | CTNAG | 1 cut(s) | 302 |
| DpnI | GATC | 2 cut(s) | 162, 300 |
| DpnII | GATC | 2 cut(s) | 160, 298 |
| Eco47I | GGWCC | 1 cut(s) | 229 |
| Eco88I | CYCGRG | 1 cut(s) | 262 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 105 |
| EcoO109I | RGGNCCY | 1 cut(s) | 229 |
| FaeI | CATG | 2 cut(s) | 23, 317 |
| FaiI | YATR | 7 cut(s) | 21, 29, 90, 166, 168, 275, 315 |
| FatI | CATG | 2 cut(s) | 19, 313 |
| FokI | GGATG | 1 cut(s) | 195 |
| FspI | TGCGCA | 1 cut(s) | 241 |
| GlaI | GCGC | 3 cut(s) | 113, 241, 281 |
| HaeIII | GGCC | 1 cut(s) | 55 |
| HapII | CCGG | 2 cut(s) | 150, 263 |
| HhaI | GCGC | 3 cut(s) | 114, 242, 282 |
| Hin1II | CATG | 2 cut(s) | 23, 317 |
| Hin6I | GCGC | 3 cut(s) | 112, 240, 280 |
| HinP1I | GCGC | 3 cut(s) | 112, 240, 280 |
| HpaII | CCGG | 2 cut(s) | 150, 263 |
| HphI | GGTGA | 1 cut(s) | 94 |
| Hpy166II | GTNNAC | 1 cut(s) | 98 |
| Hpy188III | TCNNGA | 1 cut(s) | 150 |
| Hpy8I | GTNNAC | 1 cut(s) | 98 |
| HpyAV | CCTTC | 1 cut(s) | 179 |
| HpyCH4IV | ACGT | 1 cut(s) | 154 |
| HpyCH4V | TGCA | 4 cut(s) | 11, 98, 206, 313 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 118 |
| HpyF3I | CTNAG | 1 cut(s) | 302 |
| HpySE526I | ACGT | 1 cut(s) | 154 |
| Hsp92II | CATG | 2 cut(s) | 23, 317 |
| HspAI | GCGC | 3 cut(s) | 112, 240, 280 |
| Kpn2I | TCCGGA | 1 cut(s) | 149 |
| Kzo9I | GATC | 2 cut(s) | 160, 298 |
| LpnPI | CCDG | 5 cut(s) | 45, 69, 163, 209, 276 |
| LweI | GCATC | 1 cut(s) | 193 |
| MaeII | ACGT | 1 cut(s) | 154 |
| MalI | GATC | 2 cut(s) | 162, 300 |
| MboI | GATC | 2 cut(s) | 160, 298 |
| MboII | GAAGA | 1 cut(s) | 49 |
| MfeI | CAATTG | 1 cut(s) | 6 |
| MflI | RGATCY | 1 cut(s) | 160 |
| MhlI | GDGCHC | 1 cut(s) | 100 |
| MluCI | AATT | 4 cut(s) | 6, 46, 85, 215 |
| MmeI | TCCRAC | 1 cut(s) | 40 |
| MnlI | CCTC | 3 cut(s) | 73, 101, 220 |
| MroI | TCCGGA | 1 cut(s) | 149 |
| MseI | TTAA | 1 cut(s) | 75 |
| MslI | CAYNNNNRTG | 1 cut(s) | 32 |
| MspI | CCGG | 2 cut(s) | 150, 263 |
| MspR9I | CCNGG | 2 cut(s) | 263, 264 |
| MunI | CAATTG | 1 cut(s) | 6 |
| MvnI | CGCG | 1 cut(s) | 280 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 118 |
| NciI | CCSGG | 2 cut(s) | 263, 264 |
| NdeII | GATC | 2 cut(s) | 160, 298 |
| NlaIII | CATG | 2 cut(s) | 23, 317 |
| NlaIV | GGNNCC | 3 cut(s) | 125, 162, 231 |
| NsbI | TGCGCA | 1 cut(s) | 241 |
| PpuMI | RGGWCCY | 1 cut(s) | 229 |
| PshBI | ATTAAT | 1 cut(s) | 75 |
| Psp5II | RGGWCCY | 1 cut(s) | 229 |
| PspN4I | GGNNCC | 3 cut(s) | 125, 162, 231 |
| PspPI | GGNCC | 1 cut(s) | 229 |
| PspPPI | RGGWCCY | 1 cut(s) | 229 |
| PsuI | RGATCY | 1 cut(s) | 160 |
| RseI | CAYNNNNRTG | 1 cut(s) | 32 |
| SaqAI | TTAA | 1 cut(s) | 75 |
| Sau3AI | GATC | 2 cut(s) | 160, 298 |
| Sau96I | GGNCC | 1 cut(s) | 229 |
| ScrFI | CCNGG | 2 cut(s) | 263, 264 |
| SduI | GDGCHC | 1 cut(s) | 100 |
| SetI | ASST | 4 cut(s) | 34, 84, 103, 157 |
| SfaNI | GCATC | 1 cut(s) | 193 |
| SinI | GGWCC | 1 cut(s) | 229 |
| SmaI | CCCGGG | 1 cut(s) | 264 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 32 |
| Sse9I | AATT | 4 cut(s) | 6, 46, 85, 215 |
| SsiI | CCGC | 2 cut(s) | 121, 172 |
| StyD4I | CCNGG | 2 cut(s) | 261, 262 |
| TaiI | ACGT | 1 cut(s) | 157 |
| TaqI | TCGA | 1 cut(s) | 247 |
| TasI | AATT | 4 cut(s) | 6, 46, 85, 215 |
| Tru1I | TTAA | 1 cut(s) | 75 |
| Tru9I | TTAA | 1 cut(s) | 75 |
| TspGWI | ACGGA | 1 cut(s) | 239 |
| TspMI | CCCGGG | 1 cut(s) | 262 |
| VneI | GTGCAC | 1 cut(s) | 96 |
| VpaK11BI | GGWCC | 1 cut(s) | 229 |
| VspI | ATTAAT | 1 cut(s) | 75 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 105 |
| XmaI | CCCGGG | 1 cut(s) | 262 |