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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 404, 485 |
| AccI | GTMKAC | 1 cut(s) | 417 |
| AciI | CCGC | 2 cut(s) | 79, 408 |
| AcsI | RAATTY | 1 cut(s) | 553 |
| AcyI | GRCGYC | 1 cut(s) | 468 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 430, 434 |
| AgsI | TTSAA | 2 cut(s) | 376, 521 |
| AhlI | ACTAGT | 1 cut(s) | 44 |
| AjnI | CCWGG | 1 cut(s) | 129 |
| AleI | CACNNNNGTG | 1 cut(s) | 366 |
| AluBI | AGCT | 4 cut(s) | 143, 155, 161, 598 |
| AluI | AGCT | 4 cut(s) | 143, 155, 161, 598 |
| Alw26I | GTCTC | 1 cut(s) | 292 |
| Ama87I | CYCGRG | 1 cut(s) | 119 |
| AoxI | GGCC | 3 cut(s) | 93, 436, 542 |
| ApeKI | GCWGC | 2 cut(s) | 179, 500 |
| ApoI | RAATTY | 1 cut(s) | 553 |
| AspA2I | CCTAGG | 2 cut(s) | 428, 490 |
| AspS9I | GGNCC | 2 cut(s) | 437, 543 |
| AsuHPI | GGTGA | 3 cut(s) | 491, 499, 506 |
| AvaI | CYCGRG | 1 cut(s) | 119 |
| AvrII | CCTAGG | 2 cut(s) | 428, 490 |
| BanI | GGYRCC | 2 cut(s) | 404, 485 |
| BbsI | GAAGAC | 1 cut(s) | 273 |
| BbvI | GCAGC | 2 cut(s) | 191, 487 |
| BccI | CCATC | 6 cut(s) | 92, 215, 342, 458, 476, 480 |
| BciT130I | CCWGG | 1 cut(s) | 131 |
| BcoDI | GTCTC | 1 cut(s) | 292 |
| BcuI | ACTAGT | 1 cut(s) | 44 |
| BfaI | CTAG | 4 cut(s) | 45, 126, 429, 491 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 188 |
| BisI | GCNGC | 2 cut(s) | 180, 501 |
| BlnI | CCTAGG | 2 cut(s) | 428, 490 |
| BlsI | GCNGC | 2 cut(s) | 181, 502 |
| Bme1390I | CCNGG | 1 cut(s) | 131 |
| BmeT110I | CYCGRG | 1 cut(s) | 119 |
| BmgT120I | GGNCC | 2 cut(s) | 437, 543 |
| BmiI | GGNNCC | 2 cut(s) | 406, 487 |
| BmrFI | CCNGG | 1 cut(s) | 131 |
| BmrI | ACTGGG | 1 cut(s) | 434 |
| BmsI | GCATC | 2 cut(s) | 94, 487 |
| BmuI | ACTGGG | 1 cut(s) | 434 |
| BpiI | GAAGAC | 1 cut(s) | 273 |
| BpmI | CTGGAG | 1 cut(s) | 227 |
| Bpu10I | CCTNAGC | 1 cut(s) | 539 |
| BpuEI | CTTGAG | 2 cut(s) | 74, 141 |
| BsaHI | GRCGYC | 1 cut(s) | 468 |
| BsaJI | CCNNGG | 3 cut(s) | 428, 459, 490 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 430, 434 |
| Bse1I | ACTGG | 3 cut(s) | 171, 244, 440 |
| BseBI | CCWGG | 1 cut(s) | 131 |
| BseDI | CCNNGG | 3 cut(s) | 428, 459, 490 |
| BseGI | GGATG | 3 cut(s) | 210, 238, 469 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 430, 434 |
| BseMII | CTCAG | 1 cut(s) | 553 |
| BseNI | ACTGG | 3 cut(s) | 171, 244, 440 |
| BseXI | GCAGC | 2 cut(s) | 191, 487 |
| BshFI | GGCC | 3 cut(s) | 95, 438, 544 |
| BshNI | GGYRCC | 2 cut(s) | 404, 485 |
| BsiHKCI | CYCGRG | 1 cut(s) | 119 |
| BslFI | GGGAC | 1 cut(s) | 428 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 430, 434 |
| BsmAI | GTCTC | 1 cut(s) | 292 |
| BsmBI | CGTCTC | 1 cut(s) | 292 |
| BsmFI | GGGAC | 1 cut(s) | 428 |
| BsnI | GGCC | 3 cut(s) | 95, 438, 544 |
| BsoBI | CYCGRG | 1 cut(s) | 119 |
| BspACI | CCGC | 2 cut(s) | 79, 408 |
| BspANI | GGCC | 3 cut(s) | 95, 438, 544 |
| BspCNI | CTCAG | 1 cut(s) | 552 |
| BspLI | GGNNCC | 2 cut(s) | 406, 487 |
| BspT107I | GGYRCC | 2 cut(s) | 404, 485 |
| BsrI | ACTGG | 3 cut(s) | 171, 244, 440 |
| BssECI | CCNNGG | 3 cut(s) | 428, 459, 490 |
| BssNI | GRCGYC | 1 cut(s) | 468 |
| BssT1I | CCWWGG | 3 cut(s) | 428, 459, 490 |
| Bst2UI | CCWGG | 1 cut(s) | 131 |
| BstACI | GRCGYC | 1 cut(s) | 468 |
| BstC8I | GCNNGC | 3 cut(s) | 83, 153, 436 |
| BstDEI | CTNAG | 4 cut(s) | 184, 337, 539, 606 |
| BstF5I | GGATG | 3 cut(s) | 210, 238, 469 |
| BstMAI | GTCTC | 1 cut(s) | 292 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 167, 176, 188, 197, 574 |
| BstNI | CCWGG | 1 cut(s) | 131 |
| BstSCI | CCNGG | 1 cut(s) | 129 |
| BstV1I | GCAGC | 2 cut(s) | 191, 487 |
| BstV2I | GAAGAC | 1 cut(s) | 273 |
| BsuRI | GGCC | 3 cut(s) | 95, 438, 544 |
| BtsCI | GGATG | 3 cut(s) | 210, 238, 469 |
| Cac8I | GCNNGC | 3 cut(s) | 83, 153, 436 |
| Cfr13I | GGNCC | 2 cut(s) | 437, 543 |
| CseI | GACGC | 3 cut(s) | 274, 457, 544 |
| CviAII | CATG | 1 cut(s) | 476 |
| DdeI | CTNAG | 4 cut(s) | 184, 337, 539, 606 |
| EciI | GGCGGA | 1 cut(s) | 68 |
| Eco130I | CCWWGG | 3 cut(s) | 428, 459, 490 |
| Eco32I | GATATC | 1 cut(s) | 56 |
| Eco88I | CYCGRG | 1 cut(s) | 119 |
| EcoRII | CCWGG | 1 cut(s) | 129 |
| EcoRV | GATATC | 1 cut(s) | 56 |
| EcoT14I | CCWWGG | 3 cut(s) | 428, 459, 490 |
| ErhI | CCWWGG | 3 cut(s) | 428, 459, 490 |
| Esp3I | CGTCTC | 1 cut(s) | 292 |
| FaeI | CATG | 1 cut(s) | 479 |
| FaiI | YATR | 9 cut(s) | 107, 228, 230, 249, 257, 354, 393, 453, 477 |
| FaqI | GGGAC | 1 cut(s) | 428 |
| FatI | CATG | 1 cut(s) | 475 |
| FauNDI | CATATG | 1 cut(s) | 228 |
| FblI | GTMKAC | 1 cut(s) | 417 |
| Fnu4HI | GCNGC | 2 cut(s) | 180, 501 |
| FokI | GGATG | 3 cut(s) | 197, 245, 476 |
| Fsp4HI | GCNGC | 2 cut(s) | 180, 501 |
| FspBI | CTAG | 4 cut(s) | 45, 126, 429, 491 |
| GluI | GCNGC | 2 cut(s) | 180, 501 |
| GsuI | CTGGAG | 1 cut(s) | 227 |
| HaeIII | GGCC | 3 cut(s) | 95, 438, 544 |
| HgaI | GACGC | 3 cut(s) | 274, 457, 544 |
| Hin1I | GRCGYC | 1 cut(s) | 468 |
| Hin1II | CATG | 1 cut(s) | 479 |
| HindIII | AAGCTT | 2 cut(s) | 159, 596 |
| HinfI | GANTC | 5 cut(s) | 102, 115, 220, 236, 320 |
| HphI | GGTGA | 3 cut(s) | 491, 499, 506 |
| Hpy166II | GTNNAC | 1 cut(s) | 418 |
| Hpy188I | TCNGA | 2 cut(s) | 400, 534 |
| Hpy188III | TCNNGA | 5 cut(s) | 51, 71, 119, 332, 386 |
| Hpy8I | GTNNAC | 1 cut(s) | 418 |
| HpyAV | CCTTC | 2 cut(s) | 270, 395 |
| HpyCH4IV | ACGT | 1 cut(s) | 312 |
| HpyCH4V | TGCA | 1 cut(s) | 503 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 167, 176, 188, 197, 574 |
| HpyF3I | CTNAG | 4 cut(s) | 184, 337, 539, 606 |
| HpySE526I | ACGT | 1 cut(s) | 312 |
| Hsp92I | GRCGYC | 1 cut(s) | 468 |
| Hsp92II | CATG | 1 cut(s) | 479 |
| LmnI | GCTCC | 2 cut(s) | 34, 246 |
| Lsp1109I | GCAGC | 2 cut(s) | 191, 487 |
| LweI | GCATC | 2 cut(s) | 94, 487 |
| MaeI | CTAG | 4 cut(s) | 45, 126, 429, 491 |
| MaeII | ACGT | 1 cut(s) | 312 |
| MaeIII | GTNAC | 2 cut(s) | 5, 317 |
| MboII | GAAGA | 2 cut(s) | 275, 278 |
| MluCI | AATT | 2 cut(s) | 17, 553 |
| MlyI | GAGTC | 2 cut(s) | 214, 314 |
| MnlI | CCTC | 4 cut(s) | 181, 368, 421, 588 |
| MslI | CAYNNNNRTG | 5 cut(s) | 215, 231, 366, 477, 480 |
| MspR9I | CCNGG | 1 cut(s) | 131 |
| MvaI | CCWGG | 1 cut(s) | 131 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 167, 176, 188, 197, 574 |
| NdeI | CATATG | 1 cut(s) | 228 |
| NlaIII | CATG | 1 cut(s) | 479 |
| NlaIV | GGNNCC | 2 cut(s) | 406, 487 |
| NmuCI | GTSAC | 1 cut(s) | 317 |
| OliI | CACNNNNGTG | 1 cut(s) | 366 |
| PaeR7I | CTCGAG | 1 cut(s) | 119 |
| PfeI | GAWTC | 3 cut(s) | 102, 115, 236 |
| PkrI | GCNGC | 2 cut(s) | 181, 502 |
| PleI | GAGTC | 2 cut(s) | 214, 314 |
| PpsI | GAGTC | 2 cut(s) | 214, 314 |
| Psp6I | CCWGG | 1 cut(s) | 129 |
| PspGI | CCWGG | 1 cut(s) | 129 |
| PspN4I | GGNNCC | 2 cut(s) | 406, 487 |
| PspPI | GGNCC | 2 cut(s) | 437, 543 |
| RseI | CAYNNNNRTG | 5 cut(s) | 215, 231, 366, 477, 480 |
| SatI | GCNGC | 2 cut(s) | 180, 501 |
| Sau96I | GGNCC | 2 cut(s) | 437, 543 |
| SchI | GAGTC | 2 cut(s) | 214, 314 |
| ScrFI | CCNGG | 1 cut(s) | 131 |
| SetI | ASST | 9 cut(s) | 12, 65, 135, 145, 157, 163, 315, 496, 600 |
| SfaNI | GCATC | 2 cut(s) | 94, 487 |
| Sfr274I | CTCGAG | 1 cut(s) | 119 |
| SlaI | CTCGAG | 1 cut(s) | 119 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 215, 231, 366, 477, 480 |
| SmlI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| SmoI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| SpeI | ACTAGT | 1 cut(s) | 44 |
| Sse9I | AATT | 2 cut(s) | 17, 553 |
| SsiI | CCGC | 2 cut(s) | 79, 408 |
| SspMI | CTAG | 4 cut(s) | 45, 126, 429, 491 |
| StyD4I | CCNGG | 1 cut(s) | 129 |
| StyI | CCWWGG | 3 cut(s) | 428, 459, 490 |
| TaiI | ACGT | 1 cut(s) | 315 |
| TaqI | TCGA | 1 cut(s) | 120 |
| TasI | AATT | 2 cut(s) | 17, 553 |
| TfiI | GAWTC | 3 cut(s) | 102, 115, 236 |
| TseFI | GTSAC | 1 cut(s) | 317 |
| TseI | GCWGC | 2 cut(s) | 179, 500 |
| Tsp45I | GTSAC | 1 cut(s) | 317 |
| TspDTI | ATGAA | 3 cut(s) | 272, 276, 312 |
| TspGWI | ACGGA | 2 cut(s) | 305, 403 |
| XapI | RAATTY | 1 cut(s) | 553 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 431, 479 |
| XhoI | CTCGAG | 1 cut(s) | 119 |
| XmaJI | CCTAGG | 2 cut(s) | 428, 490 |
| XmiI | GTMKAC | 1 cut(s) | 417 |
| XspI | CTAG | 4 cut(s) | 45, 126, 429, 491 |