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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 372 |
| Acc65I | GGTACC | 2 cut(s) | 532, 657 |
| AccB1I | GGYRCC | 4 cut(s) | 404, 440, 532, 657 |
| AccBSI | CCGCTC | 1 cut(s) | 651 |
| AccII | CGCG | 1 cut(s) | 327 |
| AclWI | GGATC | 1 cut(s) | 706 |
| AcsI | RAATTY | 2 cut(s) | 95, 202 |
| AcyI | GRCGYC | 2 cut(s) | 441, 461 |
| AfaI | GTAC | 3 cut(s) | 263, 534, 659 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 450, 457, 505 |
| AgsI | TTSAA | 4 cut(s) | 17, 94, 103, 245 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 193, 225 |
| AluBI | AGCT | 2 cut(s) | 41, 776 |
| AluI | AGCT | 2 cut(s) | 41, 776 |
| AlwI | GGATC | 1 cut(s) | 706 |
| Ama87I | CYCGRG | 2 cut(s) | 503, 646 |
| AoxI | GGCC | 4 cut(s) | 115, 292, 312, 524 |
| ApoI | RAATTY | 2 cut(s) | 95, 202 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 12 |
| Asp718I | GGTACC | 2 cut(s) | 532, 657 |
| AspLEI | GCGC | 1 cut(s) | 443 |
| AspS9I | GGNCC | 3 cut(s) | 312, 588, 606 |
| AsuC2I | CCSGG | 1 cut(s) | 452 |
| AsuHPI | GGTGA | 2 cut(s) | 210, 290 |
| AvaI | CYCGRG | 2 cut(s) | 503, 646 |
| AvaII | GGWCC | 2 cut(s) | 588, 606 |
| BaeGI | GKGCMC | 1 cut(s) | 409 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 649, 682 |
| BanI | GGYRCC | 4 cut(s) | 404, 440, 532, 657 |
| BauI | CACGAG | 1 cut(s) | 685 |
| BbsI | GAAGAC | 2 cut(s) | 5, 471 |
| BccI | CCATC | 5 cut(s) | 46, 53, 60, 452, 648 |
| BceAI | ACGGC | 5 cut(s) | 45, 103, 199, 326, 409 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 472, 506 |
| BcnI | CCSGG | 1 cut(s) | 452 |
| BfoI | RGCGCY | 1 cut(s) | 444 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 347 |
| BisI | GCNGC | 3 cut(s) | 393, 519, 748 |
| BlsI | GCNGC | 3 cut(s) | 394, 520, 749 |
| Bme1390I | CCNGG | 1 cut(s) | 452 |
| Bme18I | GGWCC | 2 cut(s) | 588, 606 |
| BmeT110I | CYCGRG | 2 cut(s) | 503, 646 |
| BmgT120I | GGNCC | 3 cut(s) | 312, 588, 606 |
| BmiI | GGNNCC | 7 cut(s) | 313, 406, 423, 442, 534, 590, 659 |
| BmrFI | CCNGG | 1 cut(s) | 452 |
| BmrI | ACTGGG | 1 cut(s) | 460 |
| BmsI | GCATC | 1 cut(s) | 743 |
| BmuI | ACTGGG | 1 cut(s) | 460 |
| BpiI | GAAGAC | 2 cut(s) | 5, 471 |
| BpuEI | CTTGAG | 1 cut(s) | 146 |
| BpuMI | CCSGG | 1 cut(s) | 452 |
| Bsa29I | ATCGAT | 1 cut(s) | 710 |
| BsaHI | GRCGYC | 2 cut(s) | 441, 461 |
| BsaJI | CCNNGG | 5 cut(s) | 274, 295, 342, 387, 527 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 580, 610 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 450, 457, 505 |
| Bse118I | RCCGGY | 1 cut(s) | 498 |
| Bse1I | ACTGG | 1 cut(s) | 466 |
| BseCI | ATCGAT | 1 cut(s) | 710 |
| BseDI | CCNNGG | 5 cut(s) | 274, 295, 342, 387, 527 |
| BseGI | GGATG | 4 cut(s) | 57, 64, 71, 659 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 450, 457, 505 |
| BseNI | ACTGG | 1 cut(s) | 466 |
| BseSI | GKGCMC | 1 cut(s) | 409 |
| Bsh1236I | CGCG | 1 cut(s) | 327 |
| Bsh1285I | CGRYCG | 2 cut(s) | 362, 451 |
| BshFI | GGCC | 4 cut(s) | 117, 294, 314, 526 |
| BshNI | GGYRCC | 4 cut(s) | 404, 440, 532, 657 |
| BshVI | ATCGAT | 1 cut(s) | 710 |
| BsiEI | CGRYCG | 2 cut(s) | 362, 451 |
| BsiHKCI | CYCGRG | 2 cut(s) | 503, 646 |
| BsiSI | CCGG | 3 cut(s) | 451, 499, 732 |
| BslFI | GGGAC | 1 cut(s) | 448 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 450, 457, 505 |
| BsmFI | GGGAC | 1 cut(s) | 448 |
| BsmI | GAATGC | 2 cut(s) | 495, 749 |
| BsnI | GGCC | 4 cut(s) | 117, 294, 314, 526 |
| BsoBI | CYCGRG | 2 cut(s) | 503, 646 |
| Bsp1286I | GDGCHC | 1 cut(s) | 409 |
| Bsp1407I | TGTACA | 1 cut(s) | 261 |
| Bsp143I | GATC | 3 cut(s) | 359, 695, 711 |
| BspANI | GGCC | 4 cut(s) | 117, 294, 314, 526 |
| BspDI | ATCGAT | 1 cut(s) | 710 |
| BspFNI | CGCG | 1 cut(s) | 327 |
| BspHI | TCATGA | 1 cut(s) | 765 |
| BspLI | GGNNCC | 7 cut(s) | 313, 406, 423, 442, 534, 590, 659 |
| BspPI | GGATC | 1 cut(s) | 706 |
| BspT107I | GGYRCC | 4 cut(s) | 404, 440, 532, 657 |
| BsrBI | CCGCTC | 1 cut(s) | 651 |
| BsrFI | RCCGGY | 1 cut(s) | 498 |
| BsrGI | TGTACA | 1 cut(s) | 261 |
| BsrI | ACTGG | 1 cut(s) | 466 |
| BssAI | RCCGGY | 1 cut(s) | 498 |
| BssECI | CCNNGG | 5 cut(s) | 274, 295, 342, 387, 527 |
| BssMI | GATC | 3 cut(s) | 359, 695, 711 |
| BssNI | GRCGYC | 2 cut(s) | 441, 461 |
| BssSI | CACGAG | 1 cut(s) | 685 |
| Bst2BI | CACGAG | 1 cut(s) | 685 |
| BstACI | GRCGYC | 2 cut(s) | 441, 461 |
| BstAUI | TGTACA | 1 cut(s) | 261 |
| BstC8I | GCNNGC | 1 cut(s) | 500 |
| BstDSI | CCRYGG | 1 cut(s) | 342 |
| BstEII | GGTNACC | 1 cut(s) | 635 |
| BstF5I | GGATG | 4 cut(s) | 57, 64, 71, 659 |
| BstFNI | CGCG | 1 cut(s) | 327 |
| BstH2I | RGCGCY | 1 cut(s) | 444 |
| BstHHI | GCGC | 1 cut(s) | 443 |
| BstKTI | GATC | 3 cut(s) | 362, 698, 714 |
| BstMBI | GATC | 3 cut(s) | 359, 695, 711 |
| BstMCI | CGRYCG | 2 cut(s) | 362, 451 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 38, 338, 347, 499, 753 |
| BstNSI | RCATGY | 1 cut(s) | 190 |
| BstPI | GGTNACC | 1 cut(s) | 635 |
| BstSCI | CCNGG | 1 cut(s) | 450 |
| BstSLI | GKGCMC | 1 cut(s) | 409 |
| BstUI | CGCG | 1 cut(s) | 327 |
| BstV2I | GAAGAC | 2 cut(s) | 5, 471 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 473 |
| Bsu15I | ATCGAT | 1 cut(s) | 710 |
| BsuRI | GGCC | 4 cut(s) | 117, 294, 314, 526 |
| BsuTUI | ATCGAT | 1 cut(s) | 710 |
| BtgI | CCRYGG | 1 cut(s) | 342 |
| BtsCI | GGATG | 4 cut(s) | 57, 64, 71, 659 |
| BtsIMutI | CAGTG | 1 cut(s) | 473 |
| Cac8I | GCNNGC | 1 cut(s) | 500 |
| CciI | TCATGA | 1 cut(s) | 765 |
| CfoI | GCGC | 1 cut(s) | 443 |
| Cfr10I | RCCGGY | 1 cut(s) | 498 |
| Cfr13I | GGNCC | 3 cut(s) | 312, 588, 606 |
| ClaI | ATCGAT | 1 cut(s) | 710 |
| CpoI | CGGWCCG | 1 cut(s) | 606 |
| CseI | GACGC | 1 cut(s) | 450 |
| Csp6I | GTAC | 3 cut(s) | 262, 533, 658 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 5, 40 |
| CspI | CGGWCCG | 1 cut(s) | 606 |
| CviAII | CATG | 2 cut(s) | 187, 766 |
| CviQI | GTAC | 3 cut(s) | 262, 533, 658 |
| DinI | GGCGCC | 1 cut(s) | 442 |
| DpnI | GATC | 3 cut(s) | 361, 697, 713 |
| DpnII | GATC | 3 cut(s) | 359, 695, 711 |
| EciI | GGCGGA | 4 cut(s) | 260, 303, 587, 601 |
| Eco47I | GGWCC | 2 cut(s) | 588, 606 |
| Eco88I | CYCGRG | 2 cut(s) | 503, 646 |
| Eco91I | GGTNACC | 1 cut(s) | 635 |
| EcoO65I | GGTNACC | 1 cut(s) | 635 |
| EgeI | GGCGCC | 1 cut(s) | 442 |
| EheI | GGCGCC | 1 cut(s) | 442 |
| FaeI | CATG | 2 cut(s) | 190, 769 |
| FaiI | YATR | 5 cut(s) | 188, 260, 372, 602, 767 |
| FalI | AAGNNNNNCTT | 1 cut(s) | 29 |
| FaqI | GGGAC | 1 cut(s) | 448 |
| FatI | CATG | 2 cut(s) | 186, 765 |
| Fnu4HI | GCNGC | 3 cut(s) | 393, 519, 748 |
| FokI | GGATG | 4 cut(s) | 64, 71, 78, 666 |
| Fsp4HI | GCNGC | 3 cut(s) | 393, 519, 748 |
| GlaI | GCGC | 1 cut(s) | 442 |
| GluI | GCNGC | 3 cut(s) | 393, 519, 748 |
| HaeII | RGCGCY | 1 cut(s) | 444 |
| HaeIII | GGCC | 4 cut(s) | 117, 294, 314, 526 |
| HapII | CCGG | 3 cut(s) | 451, 499, 732 |
| HgaI | GACGC | 1 cut(s) | 450 |
| HhaI | GCGC | 1 cut(s) | 443 |
| Hin1I | GRCGYC | 2 cut(s) | 441, 461 |
| Hin1II | CATG | 2 cut(s) | 190, 769 |
| Hin6I | GCGC | 1 cut(s) | 441 |
| HinP1I | GCGC | 1 cut(s) | 441 |
| HincII | GTYRAC | 1 cut(s) | 384 |
| HindII | GTYRAC | 1 cut(s) | 384 |
| HinfI | GANTC | 2 cut(s) | 484, 704 |
| HpaII | CCGG | 3 cut(s) | 451, 499, 732 |
| HphI | GGTGA | 2 cut(s) | 210, 290 |
| Hpy166II | GTNNAC | 2 cut(s) | 27, 384 |
| Hpy188I | TCNGA | 2 cut(s) | 610, 716 |
| Hpy188III | TCNNGA | 2 cut(s) | 100, 766 |
| Hpy8I | GTNNAC | 2 cut(s) | 27, 384 |
| Hpy99I | CGWCG | 2 cut(s) | 310, 430 |
| HpyAV | CCTTC | 3 cut(s) | 278, 358, 391 |
| HpyCH4IV | ACGT | 1 cut(s) | 417 |
| HpyCH4V | TGCA | 4 cut(s) | 4, 47, 181, 493 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 38, 338, 347, 499, 753 |
| HpySE526I | ACGT | 1 cut(s) | 417 |
| Hsp92I | GRCGYC | 2 cut(s) | 441, 461 |
| Hsp92II | CATG | 2 cut(s) | 190, 769 |
| HspAI | GCGC | 1 cut(s) | 441 |
| KasI | GGCGCC | 1 cut(s) | 440 |
| KpnI | GGTACC | 2 cut(s) | 536, 661 |
| KroI | GCCGGC | 1 cut(s) | 498 |
| KroNI | GCCGGC | 1 cut(s) | 500 |
| Kzo9I | GATC | 3 cut(s) | 359, 695, 711 |
| LmnI | GCTCC | 3 cut(s) | 421, 761, 781 |
| LpnPI | CCDG | 6 cut(s) | 147, 464, 479, 512, 534, 745 |
| LweI | GCATC | 1 cut(s) | 743 |
| MaeII | ACGT | 1 cut(s) | 417 |
| MaeIII | GTNAC | 1 cut(s) | 635 |
| MalI | GATC | 3 cut(s) | 361, 697, 713 |
| MbiI | CCGCTC | 1 cut(s) | 651 |
| MboI | GATC | 3 cut(s) | 359, 695, 711 |
| MboII | GAAGA | 5 cut(s) | 5, 85, 293, 471, 781 |
| MhlI | GDGCHC | 1 cut(s) | 409 |
| MluCI | AATT | 4 cut(s) | 95, 202, 214, 240 |
| Mly113I | GGCGCC | 1 cut(s) | 441 |
| MlyI | GAGTC | 2 cut(s) | 493, 713 |
| MroNI | GCCGGC | 1 cut(s) | 498 |
| MroXI | GAANNNNTTC | 1 cut(s) | 12 |
| MseI | TTAA | 1 cut(s) | 354 |
| MslI | CAYNNNNRTG | 1 cut(s) | 666 |
| MspI | CCGG | 3 cut(s) | 451, 499, 732 |
| MspR9I | CCNGG | 1 cut(s) | 452 |
| Mva1269I | GAATGC | 2 cut(s) | 495, 749 |
| MvnI | CGCG | 1 cut(s) | 327 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 38, 338, 347, 499, 753 |
| NaeI | GCCGGC | 1 cut(s) | 500 |
| NarI | GGCGCC | 1 cut(s) | 441 |
| NciI | CCSGG | 1 cut(s) | 452 |
| NdeII | GATC | 3 cut(s) | 359, 695, 711 |
| NgoMIV | GCCGGC | 1 cut(s) | 498 |
| NlaIII | CATG | 2 cut(s) | 190, 769 |
| NlaIV | GGNNCC | 7 cut(s) | 313, 406, 423, 442, 534, 590, 659 |
| NmeAIII | GCCGAG | 5 cut(s) | 299, 320, 340, 552, 562 |
| NspI | RCATGY | 1 cut(s) | 190 |
| PagI | TCATGA | 1 cut(s) | 765 |
| PctI | GAATGC | 2 cut(s) | 495, 749 |
| PdiI | GCCGGC | 1 cut(s) | 500 |
| PdmI | GAANNNNTTC | 1 cut(s) | 12 |
| PflFI | GACNNNGTC | 1 cut(s) | 452 |
| PkrI | GCNGC | 3 cut(s) | 394, 520, 749 |
| Ple19I | CGATCG | 1 cut(s) | 362 |
| PleI | GAGTC | 2 cut(s) | 492, 712 |
| PluTI | GGCGCC | 1 cut(s) | 444 |
| PpsI | GAGTC | 2 cut(s) | 492, 712 |
| PsiI | TTATAA | 1 cut(s) | 372 |
| PspEI | GGTNACC | 1 cut(s) | 635 |
| PspN4I | GGNNCC | 7 cut(s) | 313, 406, 423, 442, 534, 590, 659 |
| PspPI | GGNCC | 3 cut(s) | 312, 588, 606 |
| PsyI | GACNNNGTC | 1 cut(s) | 452 |
| PvuI | CGATCG | 1 cut(s) | 362 |
| RsaI | GTAC | 3 cut(s) | 263, 534, 659 |
| RsaNI | GTAC | 3 cut(s) | 262, 533, 658 |
| RseI | CAYNNNNRTG | 1 cut(s) | 666 |
| Rsr2I | CGGWCCG | 1 cut(s) | 606 |
| RsrII | CGGWCCG | 1 cut(s) | 606 |
| SaqAI | TTAA | 1 cut(s) | 354 |
| SatI | GCNGC | 3 cut(s) | 393, 519, 748 |
| Sau3AI | GATC | 3 cut(s) | 359, 695, 711 |
| Sau96I | GGNCC | 3 cut(s) | 312, 588, 606 |
| SchI | GAGTC | 2 cut(s) | 493, 713 |
| ScrFI | CCNGG | 1 cut(s) | 452 |
| SduI | GDGCHC | 1 cut(s) | 409 |
| SfaNI | GCATC | 1 cut(s) | 743 |
| SfoI | GGCGCC | 1 cut(s) | 442 |
| SinI | GGWCC | 2 cut(s) | 588, 606 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 666 |
| SmlI | CTYRAG | 1 cut(s) | 125 |
| SmoI | CTYRAG | 1 cut(s) | 125 |
| Sse9I | AATT | 4 cut(s) | 95, 202, 214, 240 |
| SspDI | GGCGCC | 1 cut(s) | 440 |
| StyD4I | CCNGG | 1 cut(s) | 450 |
| TaiI | ACGT | 1 cut(s) | 420 |
| TaqI | TCGA | 7 cut(s) | 362, 428, 447, 482, 487, 698, 710 |
| TaqII | GACCGA | 1 cut(s) | 401 |
| TasI | AATT | 4 cut(s) | 95, 202, 214, 240 |
| TatI | WGTACW | 1 cut(s) | 261 |
| TauI | GCSGC | 3 cut(s) | 395, 521, 750 |
| Tru1I | TTAA | 1 cut(s) | 354 |
| Tru9I | TTAA | 1 cut(s) | 354 |
| TscAI | CASTG | 1 cut(s) | 473 |
| TspDTI | ATGAA | 2 cut(s) | 754, 782 |
| TspRI | CASTG | 1 cut(s) | 473 |
| Tth111I | GACNNNGTC | 1 cut(s) | 452 |
| VpaK11BI | GGWCC | 2 cut(s) | 588, 606 |
| XapI | RAATTY | 2 cut(s) | 95, 202 |
| XceI | RCATGY | 1 cut(s) | 190 |
| XmnI | GAANNNNTTC | 1 cut(s) | 12 |