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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 193 |
| AclWI | GGATC | 1 cut(s) | 141 |
| AcyI | GRCGYC | 1 cut(s) | 190 |
| AfaI | GTAC | 2 cut(s) | 147, 221 |
| AfeI | AGCGCT | 1 cut(s) | 258 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 64 |
| AflIII | ACRYGT | 1 cut(s) | 222 |
| AgsI | TTSAA | 5 cut(s) | 7, 96, 307, 314, 343 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 343 |
| AjnI | CCWGG | 1 cut(s) | 117 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 255, 287 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 125, 157 |
| AluBI | AGCT | 5 cut(s) | 48, 63, 247, 371, 427 |
| AluI | AGCT | 5 cut(s) | 48, 63, 247, 371, 427 |
| Alw26I | GTCTC | 1 cut(s) | 478 |
| AlwI | GGATC | 1 cut(s) | 141 |
| Aor51HI | AGCGCT | 1 cut(s) | 258 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 372 |
| AspLEI | GCGC | 2 cut(s) | 259, 330 |
| AsuC2I | CCSGG | 1 cut(s) | 131 |
| AsuHPI | GGTGA | 1 cut(s) | 325 |
| BccI | CCATC | 1 cut(s) | 419 |
| BciT130I | CCWGG | 1 cut(s) | 119 |
| BcnI | CCSGG | 1 cut(s) | 131 |
| BcoDI | GTCTC | 1 cut(s) | 478 |
| BfaI | CTAG | 2 cut(s) | 260, 380 |
| BfoI | RGCGCY | 1 cut(s) | 260 |
| Bme1390I | CCNGG | 2 cut(s) | 119, 131 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 343 |
| BmrFI | CCNGG | 2 cut(s) | 119, 131 |
| BmsI | GCATC | 1 cut(s) | 174 |
| BpuEI | CTTGAG | 1 cut(s) | 153 |
| BpuMI | CCSGG | 1 cut(s) | 131 |
| BsaHI | GRCGYC | 1 cut(s) | 190 |
| BsaI | GGTCTC | 1 cut(s) | 478 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 64 |
| Bse3DI | GCAATG | 1 cut(s) | 283 |
| BseBI | CCWGG | 1 cut(s) | 119 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 64 |
| BseMI | GCAATG | 1 cut(s) | 283 |
| BseYI | CCCAGC | 1 cut(s) | 63 |
| BsiSI | CCGG | 1 cut(s) | 131 |
| BsiWI | CGTACG | 1 cut(s) | 145 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 64 |
| BsmAI | GTCTC | 1 cut(s) | 478 |
| Bso31I | GGTCTC | 1 cut(s) | 478 |
| Bsp143I | GATC | 1 cut(s) | 133 |
| BspPI | GGATC | 1 cut(s) | 141 |
| BspQI | GCTCTTC | 1 cut(s) | 378 |
| BspTNI | GGTCTC | 1 cut(s) | 478 |
| BsrDI | GCAATG | 1 cut(s) | 283 |
| BssMI | GATC | 1 cut(s) | 133 |
| BssNI | GRCGYC | 1 cut(s) | 190 |
| Bst2UI | CCWGG | 1 cut(s) | 119 |
| Bst6I | CTCTTC | 3 cut(s) | 258, 299, 378 |
| BstACI | GRCGYC | 1 cut(s) | 190 |
| BstC8I | GCNNGC | 1 cut(s) | 165 |
| BstEII | GGTNACC | 1 cut(s) | 67 |
| BstH2I | RGCGCY | 1 cut(s) | 260 |
| BstHHI | GCGC | 2 cut(s) | 259, 330 |
| BstKTI | GATC | 1 cut(s) | 136 |
| BstMAI | GTCTC | 1 cut(s) | 478 |
| BstMBI | GATC | 1 cut(s) | 133 |
| BstNI | CCWGG | 1 cut(s) | 119 |
| BstNSI | RCATGY | 2 cut(s) | 167, 226 |
| BstPI | GGTNACC | 1 cut(s) | 67 |
| BstSCI | CCNGG | 2 cut(s) | 117, 129 |
| BstX2I | RGATCY | 1 cut(s) | 133 |
| BstYI | RGATCY | 1 cut(s) | 133 |
| Cac8I | GCNNGC | 1 cut(s) | 165 |
| CfoI | GCGC | 2 cut(s) | 259, 330 |
| Csp6I | GTAC | 2 cut(s) | 146, 220 |
| CviAII | CATG | 4 cut(s) | 31, 164, 223, 388 |
| CviJI | RGCY | 5 cut(s) | 48, 63, 247, 371, 427 |
| CviKI_1 | RGCY | 5 cut(s) | 48, 63, 247, 371, 427 |
| CviQI | GTAC | 2 cut(s) | 146, 220 |
| DpnI | GATC | 1 cut(s) | 135 |
| DpnII | GATC | 1 cut(s) | 133 |
| DriI | GACNNNNNGTC | 1 cut(s) | 343 |
| Eam1104I | CTCTTC | 3 cut(s) | 258, 299, 378 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 343 |
| EarI | CTCTTC | 3 cut(s) | 258, 299, 378 |
| Eco31I | GGTCTC | 1 cut(s) | 478 |
| Eco47III | AGCGCT | 1 cut(s) | 258 |
| Eco91I | GGTNACC | 1 cut(s) | 67 |
| EcoO65I | GGTNACC | 1 cut(s) | 67 |
| EcoRII | CCWGG | 1 cut(s) | 117 |
| FaeI | CATG | 4 cut(s) | 34, 167, 226, 391 |
| FatI | CATG | 4 cut(s) | 30, 163, 222, 387 |
| FauNDI | CATATG | 1 cut(s) | 195 |
| FspBI | CTAG | 2 cut(s) | 260, 380 |
| GlaI | GCGC | 2 cut(s) | 258, 329 |
| GsaI | CCCAGC | 1 cut(s) | 67 |
| HaeII | RGCGCY | 1 cut(s) | 260 |
| HapII | CCGG | 1 cut(s) | 131 |
| HhaI | GCGC | 2 cut(s) | 259, 330 |
| Hin1I | GRCGYC | 1 cut(s) | 190 |
| Hin1II | CATG | 4 cut(s) | 34, 167, 226, 391 |
| Hin6I | GCGC | 2 cut(s) | 257, 328 |
| HinP1I | GCGC | 2 cut(s) | 257, 328 |
| HinfI | GANTC | 4 cut(s) | 18, 38, 287, 383 |
| HpaII | CCGG | 1 cut(s) | 131 |
| HphI | GGTGA | 1 cut(s) | 325 |
| Hpy166II | GTNNAC | 1 cut(s) | 404 |
| Hpy188I | TCNGA | 3 cut(s) | 52, 212, 367 |
| Hpy188III | TCNNGA | 1 cut(s) | 380 |
| Hpy8I | GTNNAC | 1 cut(s) | 404 |
| Hpy99I | CGWCG | 1 cut(s) | 192 |
| HpyAV | CCTTC | 2 cut(s) | 301, 460 |
| HpyCH4IV | ACGT | 1 cut(s) | 190 |
| HpySE526I | ACGT | 1 cut(s) | 190 |
| Hsp92I | GRCGYC | 1 cut(s) | 190 |
| Hsp92II | CATG | 4 cut(s) | 34, 167, 226, 391 |
| HspAI | GCGC | 2 cut(s) | 257, 328 |
| Kzo9I | GATC | 1 cut(s) | 133 |
| LguI | GCTCTTC | 1 cut(s) | 378 |
| LpnPI | CCDG | 6 cut(s) | 49, 104, 131, 144, 312, 468 |
| LweI | GCATC | 1 cut(s) | 174 |
| MaeI | CTAG | 2 cut(s) | 260, 380 |
| MaeII | ACGT | 1 cut(s) | 190 |
| MaeIII | GTNAC | 1 cut(s) | 67 |
| MalI | GATC | 1 cut(s) | 135 |
| MboI | GATC | 1 cut(s) | 133 |
| MboII | GAAGA | 3 cut(s) | 275, 286, 365 |
| MfeI | CAATTG | 1 cut(s) | 465 |
| MflI | RGATCY | 1 cut(s) | 133 |
| MluCI | AATT | 3 cut(s) | 361, 429, 465 |
| MlyI | GAGTC | 2 cut(s) | 12, 32 |
| MnlI | CCTC | 3 cut(s) | 98, 229, 302 |
| MroXI | GAANNNNTTC | 1 cut(s) | 372 |
| MseI | TTAA | 1 cut(s) | 231 |
| MspI | CCGG | 1 cut(s) | 131 |
| MspR9I | CCNGG | 2 cut(s) | 119, 131 |
| MunI | CAATTG | 1 cut(s) | 465 |
| MvaI | CCWGG | 1 cut(s) | 119 |
| NciI | CCSGG | 1 cut(s) | 131 |
| NdeI | CATATG | 1 cut(s) | 195 |
| NdeII | GATC | 1 cut(s) | 133 |
| NlaIII | CATG | 4 cut(s) | 34, 167, 226, 391 |
| NspI | RCATGY | 2 cut(s) | 167, 226 |
| PaeI | GCATGC | 1 cut(s) | 167 |
| PciI | ACATGT | 1 cut(s) | 222 |
| PciSI | GCTCTTC | 1 cut(s) | 378 |
| PdmI | GAANNNNTTC | 1 cut(s) | 372 |
| PfeI | GAWTC | 2 cut(s) | 287, 383 |
| Pfl23II | CGTACG | 1 cut(s) | 145 |
| PleI | GAGTC | 2 cut(s) | 12, 32 |
| PpsI | GAGTC | 2 cut(s) | 12, 32 |
| PscI | ACATGT | 1 cut(s) | 222 |
| Psp6I | CCWGG | 1 cut(s) | 117 |
| PspEI | GGTNACC | 1 cut(s) | 67 |
| PspFI | CCCAGC | 1 cut(s) | 63 |
| PspGI | CCWGG | 1 cut(s) | 117 |
| PspLI | CGTACG | 1 cut(s) | 145 |
| PsuI | RGATCY | 1 cut(s) | 133 |
| RsaI | GTAC | 2 cut(s) | 147, 221 |
| RsaNI | GTAC | 2 cut(s) | 146, 220 |
| SapI | GCTCTTC | 1 cut(s) | 378 |
| SaqAI | TTAA | 1 cut(s) | 231 |
| Sau3AI | GATC | 1 cut(s) | 133 |
| SchI | GAGTC | 2 cut(s) | 12, 32 |
| ScrFI | CCNGG | 2 cut(s) | 119, 131 |
| SfaNI | GCATC | 1 cut(s) | 174 |
| SmlI | CTYRAG | 1 cut(s) | 168 |
| SmoI | CTYRAG | 1 cut(s) | 168 |
| SphI | GCATGC | 1 cut(s) | 167 |
| Sse9I | AATT | 3 cut(s) | 361, 429, 465 |
| SspMI | CTAG | 2 cut(s) | 260, 380 |
| StyD4I | CCNGG | 2 cut(s) | 117, 129 |
| TaiI | ACGT | 1 cut(s) | 193 |
| TaqI | TCGA | 2 cut(s) | 21, 227 |
| TasI | AATT | 3 cut(s) | 361, 429, 465 |
| TatI | WGTACW | 1 cut(s) | 219 |
| TfiI | GAWTC | 2 cut(s) | 287, 383 |
| Tru1I | TTAA | 1 cut(s) | 231 |
| Tru9I | TTAA | 1 cut(s) | 231 |
| TspDTI | ATGAA | 1 cut(s) | 24 |
| XbaI | TCTAGA | 1 cut(s) | 379 |
| XceI | RCATGY | 2 cut(s) | 167, 226 |
| XmnI | GAANNNNTTC | 1 cut(s) | 372 |
| XspI | CTAG | 2 cut(s) | 260, 380 |
| ZraI | GACGTC | 1 cut(s) | 191 |