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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 262, 416 |
| AccII | CGCG | 1 cut(s) | 252 |
| AciI | CCGC | 2 cut(s) | 121, 327 |
| AcsI | RAATTY | 1 cut(s) | 616 |
| AcyI | GRCGYC | 4 cut(s) | 263, 387, 399, 417 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 61, 130, 361, 365 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 108 |
| AjnI | CCWGG | 1 cut(s) | 421 |
| AluBI | AGCT | 2 cut(s) | 24, 475 |
| AluI | AGCT | 2 cut(s) | 24, 475 |
| Alw21I | GWGCWC | 1 cut(s) | 160 |
| Alw26I | GTCTC | 2 cut(s) | 346, 550 |
| Alw44I | GTGCAC | 1 cut(s) | 156 |
| ApaLI | GTGCAC | 1 cut(s) | 156 |
| ApoI | RAATTY | 1 cut(s) | 616 |
| AspA2I | CCTAGG | 1 cut(s) | 359 |
| AspLEI | GCGC | 3 cut(s) | 254, 265, 419 |
| AspS9I | GGNCC | 1 cut(s) | 110 |
| AsuHPI | GGTGA | 3 cut(s) | 422, 430, 437 |
| AvaII | GGWCC | 1 cut(s) | 110 |
| AvrII | CCTAGG | 1 cut(s) | 359 |
| AxyI | CCTNAGG | 1 cut(s) | 538 |
| BaeGI | GKGCMC | 1 cut(s) | 160 |
| BanI | GGYRCC | 2 cut(s) | 262, 416 |
| BanII | GRGCYC | 1 cut(s) | 282 |
| BbsI | GAAGAC | 1 cut(s) | 233 |
| Bbv12I | GWGCWC | 1 cut(s) | 160 |
| BccI | CCATC | 3 cut(s) | 389, 407, 411 |
| BciT130I | CCWGG | 1 cut(s) | 423 |
| BcoDI | GTCTC | 2 cut(s) | 346, 550 |
| BfaI | CTAG | 3 cut(s) | 5, 303, 360 |
| BfoI | RGCGCY | 2 cut(s) | 266, 420 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 260 |
| BlnI | CCTAGG | 1 cut(s) | 359 |
| Bme1390I | CCNGG | 1 cut(s) | 423 |
| Bme18I | GGWCC | 1 cut(s) | 110 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 108 |
| BmgT120I | GGNCC | 1 cut(s) | 110 |
| BmiI | GGNNCC | 4 cut(s) | 164, 264, 279, 418 |
| BmrFI | CCNGG | 1 cut(s) | 423 |
| BpiI | GAAGAC | 1 cut(s) | 233 |
| BpuEI | CTTGAG | 1 cut(s) | 455 |
| BsaHI | GRCGYC | 4 cut(s) | 263, 387, 399, 417 |
| BsaI | GGTCTC | 1 cut(s) | 550 |
| BsaJI | CCNNGG | 6 cut(s) | 11, 166, 211, 359, 390, 421 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 61, 130, 361, 365 |
| Bse21I | CCTNAGG | 1 cut(s) | 538 |
| BseBI | CCWGG | 1 cut(s) | 423 |
| BseDI | CCNNGG | 6 cut(s) | 11, 166, 211, 359, 390, 421 |
| BseGI | GGATG | 1 cut(s) | 400 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 61, 130, 361, 365 |
| BseSI | GKGCMC | 1 cut(s) | 160 |
| Bsh1236I | CGCG | 1 cut(s) | 252 |
| BshNI | GGYRCC | 2 cut(s) | 262, 416 |
| BsiHKAI | GWGCWC | 1 cut(s) | 160 |
| BslFI | GGGAC | 1 cut(s) | 106 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 61, 130, 361, 365 |
| BsmAI | GTCTC | 2 cut(s) | 346, 550 |
| BsmBI | CGTCTC | 1 cut(s) | 346 |
| BsmFI | GGGAC | 1 cut(s) | 106 |
| Bso31I | GGTCTC | 1 cut(s) | 550 |
| Bsp1286I | GDGCHC | 2 cut(s) | 160, 282 |
| Bsp143I | GATC | 1 cut(s) | 269 |
| Bsp19I | CCATGG | 2 cut(s) | 211, 390 |
| BspACI | CCGC | 2 cut(s) | 121, 327 |
| BspFNI | CGCG | 1 cut(s) | 252 |
| BspLI | GGNNCC | 4 cut(s) | 164, 264, 279, 418 |
| BspT107I | GGYRCC | 2 cut(s) | 262, 416 |
| BspTNI | GGTCTC | 1 cut(s) | 550 |
| BssECI | CCNNGG | 6 cut(s) | 11, 166, 211, 359, 390, 421 |
| BssMI | GATC | 1 cut(s) | 269 |
| BssNI | GRCGYC | 4 cut(s) | 263, 387, 399, 417 |
| BssT1I | CCWWGG | 3 cut(s) | 211, 359, 390 |
| Bst2UI | CCWGG | 1 cut(s) | 423 |
| Bst4CI | ACNGT | 2 cut(s) | 167, 561 |
| BstACI | GRCGYC | 4 cut(s) | 263, 387, 399, 417 |
| BstC8I | GCNNGC | 1 cut(s) | 367 |
| BstDEI | CTNAG | 4 cut(s) | 20, 83, 308, 538 |
| BstDSI | CCRYGG | 4 cut(s) | 11, 166, 211, 390 |
| BstF5I | GGATG | 1 cut(s) | 400 |
| BstFNI | CGCG | 1 cut(s) | 252 |
| BstH2I | RGCGCY | 2 cut(s) | 266, 420 |
| BstHHI | GCGC | 3 cut(s) | 254, 265, 419 |
| BstKTI | GATC | 1 cut(s) | 272 |
| BstMAI | GTCTC | 2 cut(s) | 346, 550 |
| BstMBI | GATC | 1 cut(s) | 269 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 260, 505 |
| BstNI | CCWGG | 1 cut(s) | 423 |
| BstSCI | CCNGG | 1 cut(s) | 421 |
| BstSLI | GKGCMC | 1 cut(s) | 160 |
| BstUI | CGCG | 1 cut(s) | 252 |
| BstV2I | GAAGAC | 1 cut(s) | 233 |
| Bsu36I | CCTNAGG | 1 cut(s) | 538 |
| BtgI | CCRYGG | 4 cut(s) | 11, 166, 211, 390 |
| BtsCI | GGATG | 1 cut(s) | 400 |
| Cac8I | GCNNGC | 1 cut(s) | 367 |
| CfoI | GCGC | 3 cut(s) | 254, 265, 419 |
| Cfr13I | GGNCC | 1 cut(s) | 110 |
| CseI | GACGC | 4 cut(s) | 74, 388, 395, 475 |
| CviAII | CATG | 4 cut(s) | 212, 383, 391, 407 |
| CviJI | RGCY | 8 cut(s) | 24, 203, 280, 358, 365, 475, 508, 530 |
| CviKI_1 | RGCY | 8 cut(s) | 24, 203, 280, 358, 365, 475, 508, 530 |
| DdeI | CTNAG | 4 cut(s) | 20, 83, 308, 538 |
| DinI | GGCGCC | 2 cut(s) | 264, 418 |
| DpnI | GATC | 1 cut(s) | 271 |
| DpnII | GATC | 1 cut(s) | 269 |
| DriI | GACNNNNNGTC | 1 cut(s) | 108 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 108 |
| EciI | GGCGGA | 1 cut(s) | 110 |
| Eco130I | CCWWGG | 3 cut(s) | 211, 359, 390 |
| Eco24I | GRGCYC | 1 cut(s) | 282 |
| Eco31I | GGTCTC | 1 cut(s) | 550 |
| Eco47I | GGWCC | 1 cut(s) | 110 |
| Eco81I | CCTNAGG | 1 cut(s) | 538 |
| EcoRII | CCWGG | 1 cut(s) | 421 |
| EcoT14I | CCWWGG | 3 cut(s) | 211, 359, 390 |
| EcoT38I | GRGCYC | 1 cut(s) | 282 |
| EgeI | GGCGCC | 2 cut(s) | 264, 418 |
| EheI | GGCGCC | 2 cut(s) | 264, 418 |
| ErhI | CCWWGG | 3 cut(s) | 211, 359, 390 |
| Esp3I | CGTCTC | 1 cut(s) | 346 |
| FaeI | CATG | 4 cut(s) | 215, 386, 394, 410 |
| FaqI | GGGAC | 1 cut(s) | 106 |
| FatI | CATG | 4 cut(s) | 211, 382, 390, 406 |
| FauNDI | CATATG | 1 cut(s) | 115 |
| FokI | GGATG | 1 cut(s) | 407 |
| FriOI | GRGCYC | 1 cut(s) | 282 |
| FspBI | CTAG | 3 cut(s) | 5, 303, 360 |
| GlaI | GCGC | 3 cut(s) | 253, 264, 418 |
| HaeII | RGCGCY | 2 cut(s) | 266, 420 |
| HgaI | GACGC | 4 cut(s) | 74, 388, 395, 475 |
| HhaI | GCGC | 3 cut(s) | 254, 265, 419 |
| Hin1I | GRCGYC | 4 cut(s) | 263, 387, 399, 417 |
| Hin1II | CATG | 4 cut(s) | 215, 386, 394, 410 |
| Hin6I | GCGC | 3 cut(s) | 252, 263, 417 |
| HinP1I | GCGC | 3 cut(s) | 252, 263, 417 |
| HincII | GTYRAC | 1 cut(s) | 176 |
| HindII | GTYRAC | 1 cut(s) | 176 |
| HindIII | AAGCTT | 1 cut(s) | 22 |
| HinfI | GANTC | 2 cut(s) | 34, 606 |
| HphI | GGTGA | 3 cut(s) | 422, 430, 437 |
| Hpy166II | GTNNAC | 3 cut(s) | 158, 176, 349 |
| Hpy188I | TCNGA | 4 cut(s) | 33, 102, 208, 465 |
| Hpy188III | TCNNGA | 1 cut(s) | 303 |
| Hpy8I | GTNNAC | 3 cut(s) | 158, 176, 349 |
| HpyAV | CCTTC | 1 cut(s) | 128 |
| HpyCH4III | ACNGT | 2 cut(s) | 167, 561 |
| HpyCH4V | TGCA | 2 cut(s) | 158, 569 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 260, 505 |
| HpyF3I | CTNAG | 4 cut(s) | 20, 83, 308, 538 |
| Hsp92I | GRCGYC | 4 cut(s) | 263, 387, 399, 417 |
| Hsp92II | CATG | 4 cut(s) | 215, 386, 394, 410 |
| HspAI | GCGC | 3 cut(s) | 252, 263, 417 |
| KasI | GGCGCC | 2 cut(s) | 262, 416 |
| Kzo9I | GATC | 1 cut(s) | 269 |
| LmnI | GCTCC | 2 cut(s) | 72, 277 |
| LpnPI | CCDG | 5 cut(s) | 343, 351, 368, 408, 435 |
| MaeI | CTAG | 3 cut(s) | 5, 303, 360 |
| MaeIII | GTNAC | 3 cut(s) | 46, 218, 313 |
| MalI | GATC | 1 cut(s) | 271 |
| MboI | GATC | 1 cut(s) | 269 |
| MboII | GAAGA | 2 cut(s) | 196, 233 |
| MhlI | GDGCHC | 2 cut(s) | 160, 282 |
| MluCI | AATT | 3 cut(s) | 96, 545, 616 |
| Mly113I | GGCGCC | 2 cut(s) | 263, 417 |
| MlyI | GAGTC | 1 cut(s) | 43 |
| MmeI | TCCRAC | 1 cut(s) | 231 |
| MnlI | CCTC | 8 cut(s) | 55, 124, 164, 188, 214, 276, 498, 519 |
| MseI | TTAA | 1 cut(s) | 548 |
| MslI | CAYNNNNRTG | 2 cut(s) | 408, 411 |
| MspR9I | CCNGG | 1 cut(s) | 423 |
| MvaI | CCWGG | 1 cut(s) | 423 |
| MvnI | CGCG | 1 cut(s) | 252 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 260, 505 |
| NarI | GGCGCC | 2 cut(s) | 263, 417 |
| NcoI | CCATGG | 2 cut(s) | 211, 390 |
| NdeI | CATATG | 1 cut(s) | 115 |
| NdeII | GATC | 1 cut(s) | 269 |
| NlaIII | CATG | 4 cut(s) | 215, 386, 394, 410 |
| NlaIV | GGNNCC | 4 cut(s) | 164, 264, 279, 418 |
| NmeAIII | GCCGAG | 1 cut(s) | 170 |
| NmuCI | GTSAC | 2 cut(s) | 46, 313 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 72 |
| PfeI | GAWTC | 1 cut(s) | 606 |
| PleI | GAGTC | 1 cut(s) | 42 |
| PluTI | GGCGCC | 2 cut(s) | 266, 420 |
| PpsI | GAGTC | 1 cut(s) | 42 |
| Psp6I | CCWGG | 1 cut(s) | 421 |
| PspGI | CCWGG | 1 cut(s) | 421 |
| PspN4I | GGNNCC | 4 cut(s) | 164, 264, 279, 418 |
| PspPI | GGNCC | 1 cut(s) | 110 |
| RseI | CAYNNNNRTG | 2 cut(s) | 408, 411 |
| SaqAI | TTAA | 1 cut(s) | 548 |
| Sau3AI | GATC | 1 cut(s) | 269 |
| Sau96I | GGNCC | 1 cut(s) | 110 |
| SchI | GAGTC | 1 cut(s) | 43 |
| ScrFI | CCNGG | 1 cut(s) | 423 |
| SduI | GDGCHC | 2 cut(s) | 160, 282 |
| SetI | ASST | 5 cut(s) | 26, 175, 241, 427, 477 |
| SfoI | GGCGCC | 2 cut(s) | 264, 418 |
| SinI | GGWCC | 1 cut(s) | 110 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 408, 411 |
| SmlI | CTYRAG | 1 cut(s) | 470 |
| SmoI | CTYRAG | 1 cut(s) | 470 |
| Sse9I | AATT | 3 cut(s) | 96, 545, 616 |
| SsiI | CCGC | 2 cut(s) | 121, 327 |
| SspDI | GGCGCC | 2 cut(s) | 262, 416 |
| SspMI | CTAG | 3 cut(s) | 5, 303, 360 |
| StyD4I | CCNGG | 1 cut(s) | 421 |
| StyI | CCWWGG | 3 cut(s) | 211, 359, 390 |
| TaaI | ACNGT | 2 cut(s) | 167, 561 |
| TaqI | TCGA | 1 cut(s) | 268 |
| TaqII | GACCGA | 3 cut(s) | 98, 332, 568 |
| TasI | AATT | 3 cut(s) | 96, 545, 616 |
| TfiI | GAWTC | 1 cut(s) | 606 |
| Tru1I | TTAA | 1 cut(s) | 548 |
| Tru9I | TTAA | 1 cut(s) | 548 |
| TseFI | GTSAC | 2 cut(s) | 46, 313 |
| Tsp45I | GTSAC | 2 cut(s) | 46, 313 |
| TspGWI | ACGGA | 3 cut(s) | 175, 334, 599 |
| VneI | GTGCAC | 1 cut(s) | 156 |
| VpaK11BI | GGWCC | 1 cut(s) | 110 |
| XapI | RAATTY | 1 cut(s) | 616 |
| XbaI | TCTAGA | 1 cut(s) | 302 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 362, 410 |
| XmaJI | CCTAGG | 1 cut(s) | 359 |
| XspI | CTAG | 3 cut(s) | 5, 303, 360 |