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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 438, 483 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 546 |
| AccB1I | GGYRCC | 3 cut(s) | 91, 680, 701 |
| AccBSI | CCGCTC | 2 cut(s) | 511, 593 |
| AciI | CCGC | 3 cut(s) | 511, 580, 593 |
| AclWI | GGATC | 2 cut(s) | 371, 790 |
| AcuI | CTGAAG | 2 cut(s) | 366, 960 |
| AcvI | CACGTG | 2 cut(s) | 602, 620 |
| AcyI | GRCGYC | 2 cut(s) | 681, 702 |
| AdeI | CACNNNGTG | 2 cut(s) | 605, 731 |
| AfaI | GTAC | 2 cut(s) | 343, 878 |
| AfeI | AGCGCT | 2 cut(s) | 228, 239 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 34, 497, 498, 621, 650 |
| AflIII | ACRYGT | 2 cut(s) | 599, 617 |
| AgsI | TTSAA | 7 cut(s) | 115, 277, 444, 745, 805, 837, 934 |
| AjnI | CCWGG | 1 cut(s) | 87 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 225, 257, 339, 371 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 95, 127 |
| AluBI | AGCT | 6 cut(s) | 217, 280, 382, 668, 833, 938 |
| AluI | AGCT | 6 cut(s) | 217, 280, 382, 668, 833, 938 |
| Alw21I | GWGCWC | 2 cut(s) | 736, 954 |
| Alw26I | GTCTC | 1 cut(s) | 900 |
| Alw44I | GTGCAC | 2 cut(s) | 732, 950 |
| AlwI | GGATC | 2 cut(s) | 371, 790 |
| Aor51HI | AGCGCT | 2 cut(s) | 228, 239 |
| AoxI | GGCC | 1 cut(s) | 446 |
| ApaLI | GTGCAC | 2 cut(s) | 732, 950 |
| ApeKI | GCWGC | 1 cut(s) | 962 |
| AspA2I | CCTAGG | 1 cut(s) | 518 |
| AspLEI | GCGC | 5 cut(s) | 229, 240, 504, 683, 704 |
| AspS9I | GGNCC | 2 cut(s) | 548, 856 |
| AsuC2I | CCSGG | 1 cut(s) | 101 |
| AsuHPI | GGTGA | 1 cut(s) | 910 |
| AvaII | GGWCC | 2 cut(s) | 548, 856 |
| AvrII | CCTAGG | 1 cut(s) | 518 |
| AxyI | CCTNAGG | 2 cut(s) | 714, 860 |
| BaeGI | GKGCMC | 2 cut(s) | 736, 954 |
| BanI | GGYRCC | 3 cut(s) | 91, 680, 701 |
| BauI | CACGAG | 3 cut(s) | 367, 425, 669 |
| BbrPI | CACGTG | 2 cut(s) | 602, 620 |
| BbsI | GAAGAC | 1 cut(s) | 296 |
| Bbv12I | GWGCWC | 2 cut(s) | 736, 954 |
| BbvI | GCAGC | 1 cut(s) | 949 |
| BciT130I | CCWGG | 1 cut(s) | 89 |
| BciVI | GTATCC | 1 cut(s) | 589 |
| BcnI | CCSGG | 1 cut(s) | 101 |
| BcoDI | GTCTC | 1 cut(s) | 900 |
| BfaI | CTAG | 4 cut(s) | 230, 519, 786, 830 |
| BfmI | CTRYAG | 1 cut(s) | 963 |
| BfoI | RGCGCY | 4 cut(s) | 230, 241, 684, 705 |
| BfuI | GTATCC | 1 cut(s) | 589 |
| BisI | GCNGC | 1 cut(s) | 963 |
| BlnI | CCTAGG | 1 cut(s) | 518 |
| BlsI | GCNGC | 1 cut(s) | 964 |
| Bme1390I | CCNGG | 2 cut(s) | 89, 101 |
| Bme18I | GGWCC | 2 cut(s) | 548, 856 |
| BmgT120I | GGNCC | 2 cut(s) | 548, 856 |
| BmiI | GGNNCC | 8 cut(s) | 93, 515, 549, 661, 682, 703, 751, 857 |
| BmrFI | CCNGG | 2 cut(s) | 89, 101 |
| BmsI | GCATC | 3 cut(s) | 144, 196, 949 |
| BpiI | GAAGAC | 1 cut(s) | 296 |
| BpuEI | CTTGAG | 1 cut(s) | 123 |
| BpuMI | CCSGG | 1 cut(s) | 101 |
| Bsa29I | ATCGAT | 1 cut(s) | 775 |
| BsaAI | YACGTR | 2 cut(s) | 602, 620 |
| BsaBI | GATNNNNATC | 1 cut(s) | 781 |
| BsaHI | GRCGYC | 2 cut(s) | 681, 702 |
| BsaJI | CCNNGG | 5 cut(s) | 66, 518, 649, 684, 921 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 179, 209, 616, 646 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 34, 497, 498, 621, 650 |
| Bse21I | CCTNAGG | 2 cut(s) | 714, 860 |
| Bse3DI | GCAATG | 2 cut(s) | 616, 815 |
| Bse8I | GATNNNNATC | 1 cut(s) | 781 |
| BseBI | CCWGG | 1 cut(s) | 89 |
| BseCI | ATCGAT | 1 cut(s) | 775 |
| BseDI | CCNNGG | 5 cut(s) | 66, 518, 649, 684, 921 |
| BseGI | GGATG | 1 cut(s) | 964 |
| BseJI | GATNNNNATC | 1 cut(s) | 781 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 34, 497, 498, 621, 650 |
| BseMI | GCAATG | 2 cut(s) | 616, 815 |
| BseMII | CTCAG | 3 cut(s) | 193, 396, 851 |
| BseSI | GKGCMC | 2 cut(s) | 736, 954 |
| BseXI | GCAGC | 1 cut(s) | 949 |
| BshFI | GGCC | 1 cut(s) | 448 |
| BshNI | GGYRCC | 3 cut(s) | 91, 680, 701 |
| BshVI | ATCGAT | 1 cut(s) | 775 |
| BsiHKAI | GWGCWC | 2 cut(s) | 736, 954 |
| BsiSI | CCGG | 1 cut(s) | 101 |
| BslFI | GGGAC | 2 cut(s) | 552, 869 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 34, 497, 498, 621, 650 |
| BsmAI | GTCTC | 1 cut(s) | 900 |
| BsmBI | CGTCTC | 1 cut(s) | 900 |
| BsmFI | GGGAC | 2 cut(s) | 552, 869 |
| BsmI | GAATGC | 1 cut(s) | 465 |
| BsnI | GGCC | 1 cut(s) | 448 |
| Bsp1286I | GDGCHC | 2 cut(s) | 736, 954 |
| Bsp143I | GATC | 3 cut(s) | 198, 363, 782 |
| Bsp19I | CCATGG | 2 cut(s) | 684, 921 |
| BspACI | CCGC | 3 cut(s) | 511, 580, 593 |
| BspANI | GGCC | 1 cut(s) | 448 |
| BspCNI | CTCAG | 3 cut(s) | 192, 397, 852 |
| BspDI | ATCGAT | 1 cut(s) | 775 |
| BspHI | TCATGA | 2 cut(s) | 469, 790 |
| BspLI | GGNNCC | 8 cut(s) | 93, 515, 549, 661, 682, 703, 751, 857 |
| BspMAI | CTGCAG | 1 cut(s) | 967 |
| BspPI | GGATC | 2 cut(s) | 371, 790 |
| BspQI | GCTCTTC | 1 cut(s) | 228 |
| BspT107I | GGYRCC | 3 cut(s) | 91, 680, 701 |
| BsrBI | CCGCTC | 2 cut(s) | 511, 593 |
| BsrDI | GCAATG | 2 cut(s) | 616, 815 |
| BssECI | CCNNGG | 5 cut(s) | 66, 518, 649, 684, 921 |
| BssMI | GATC | 3 cut(s) | 198, 363, 782 |
| BssNI | GRCGYC | 2 cut(s) | 681, 702 |
| BssSI | CACGAG | 3 cut(s) | 367, 425, 669 |
| BssT1I | CCWWGG | 4 cut(s) | 66, 518, 684, 921 |
| Bst2BI | CACGAG | 3 cut(s) | 367, 425, 669 |
| Bst2UI | CCWGG | 1 cut(s) | 89 |
| Bst4CI | ACNGT | 3 cut(s) | 32, 341, 560 |
| Bst6I | CTCTTC | 1 cut(s) | 228 |
| BstACI | GRCGYC | 2 cut(s) | 681, 702 |
| BstBAI | YACGTR | 2 cut(s) | 602, 620 |
| BstC8I | GCNNGC | 3 cut(s) | 135, 820, 824 |
| BstDEI | CTNAG | 5 cut(s) | 179, 405, 459, 714, 860 |
| BstDSI | CCRYGG | 3 cut(s) | 649, 684, 921 |
| BstEII | GGTNACC | 1 cut(s) | 37 |
| BstF5I | GGATG | 1 cut(s) | 964 |
| BstH2I | RGCGCY | 4 cut(s) | 230, 241, 684, 705 |
| BstHHI | GCGC | 5 cut(s) | 229, 240, 504, 683, 704 |
| BstKTI | GATC | 3 cut(s) | 201, 366, 785 |
| BstMAI | GTCTC | 1 cut(s) | 900 |
| BstMBI | GATC | 3 cut(s) | 198, 363, 782 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 235, 508, 819 |
| BstNI | CCWGG | 1 cut(s) | 89 |
| BstNSI | RCATGY | 1 cut(s) | 137 |
| BstPI | GGTNACC | 1 cut(s) | 37 |
| BstSCI | CCNGG | 2 cut(s) | 87, 99 |
| BstSFI | CTRYAG | 1 cut(s) | 963 |
| BstSLI | GKGCMC | 2 cut(s) | 736, 954 |
| BstV1I | GCAGC | 1 cut(s) | 949 |
| BstV2I | GAAGAC | 1 cut(s) | 296 |
| BstX2I | RGATCY | 1 cut(s) | 782 |
| BstYI | RGATCY | 1 cut(s) | 782 |
| Bsu15I | ATCGAT | 1 cut(s) | 775 |
| Bsu36I | CCTNAGG | 2 cut(s) | 714, 860 |
| BsuI | GTATCC | 1 cut(s) | 589 |
| BsuRI | GGCC | 1 cut(s) | 448 |
| BsuTUI | ATCGAT | 1 cut(s) | 775 |
| BtgI | CCRYGG | 3 cut(s) | 649, 684, 921 |
| BtsCI | GGATG | 1 cut(s) | 964 |
| Cac8I | GCNNGC | 3 cut(s) | 135, 820, 824 |
| CciI | TCATGA | 2 cut(s) | 469, 790 |
| CfoI | GCGC | 5 cut(s) | 229, 240, 504, 683, 704 |
| Cfr13I | GGNCC | 2 cut(s) | 548, 856 |
| ClaI | ATCGAT | 1 cut(s) | 775 |
| Csp6I | GTAC | 2 cut(s) | 342, 877 |
| CviAII | CATG | 8 cut(s) | 134, 413, 470, 533, 685, 692, 791, 922 |
| CviQI | GTAC | 2 cut(s) | 342, 877 |
| DdeI | CTNAG | 5 cut(s) | 179, 405, 459, 714, 860 |
| DinI | GGCGCC | 2 cut(s) | 682, 703 |
| DpnI | GATC | 3 cut(s) | 200, 365, 784 |
| DpnII | GATC | 3 cut(s) | 198, 363, 782 |
| DraIII | CACNNNGTG | 2 cut(s) | 605, 731 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 546 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 546 |
| Eam1104I | CTCTTC | 1 cut(s) | 228 |
| EarI | CTCTTC | 1 cut(s) | 228 |
| Eco130I | CCWWGG | 4 cut(s) | 66, 518, 684, 921 |
| Eco147I | AGGCCT | 1 cut(s) | 448 |
| Eco47I | GGWCC | 2 cut(s) | 548, 856 |
| Eco47III | AGCGCT | 2 cut(s) | 228, 239 |
| Eco57I | CTGAAG | 2 cut(s) | 366, 960 |
| Eco72I | CACGTG | 2 cut(s) | 602, 620 |
| Eco81I | CCTNAGG | 2 cut(s) | 714, 860 |
| Eco91I | GGTNACC | 1 cut(s) | 37 |
| EcoO109I | RGGNCCY | 1 cut(s) | 856 |
| EcoO65I | GGTNACC | 1 cut(s) | 37 |
| EcoRII | CCWGG | 1 cut(s) | 87 |
| EcoT14I | CCWWGG | 4 cut(s) | 66, 518, 684, 921 |
| EgeI | GGCGCC | 2 cut(s) | 682, 703 |
| EheI | GGCGCC | 2 cut(s) | 682, 703 |
| ErhI | CCWWGG | 4 cut(s) | 66, 518, 684, 921 |
| Esp3I | CGTCTC | 1 cut(s) | 900 |
| FaeI | CATG | 8 cut(s) | 137, 416, 473, 536, 688, 695, 794, 925 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 864, 896 |
| FaqI | GGGAC | 2 cut(s) | 552, 869 |
| FatI | CATG | 8 cut(s) | 133, 412, 469, 532, 684, 691, 790, 921 |
| FauNDI | CATATG | 1 cut(s) | 165 |
| Fnu4HI | GCNGC | 1 cut(s) | 963 |
| FokI | GGATG | 1 cut(s) | 971 |
| Fsp4HI | GCNGC | 1 cut(s) | 963 |
| FspBI | CTAG | 4 cut(s) | 230, 519, 786, 830 |
| GlaI | GCGC | 5 cut(s) | 228, 239, 503, 682, 703 |
| GluI | GCNGC | 1 cut(s) | 963 |
| HaeII | RGCGCY | 4 cut(s) | 230, 241, 684, 705 |
| HaeIII | GGCC | 1 cut(s) | 448 |
| HapII | CCGG | 1 cut(s) | 101 |
| HhaI | GCGC | 5 cut(s) | 229, 240, 504, 683, 704 |
| Hin1I | GRCGYC | 2 cut(s) | 681, 702 |
| Hin1II | CATG | 8 cut(s) | 137, 416, 473, 536, 688, 695, 794, 925 |
| Hin6I | GCGC | 5 cut(s) | 227, 238, 502, 681, 702 |
| HinP1I | GCGC | 5 cut(s) | 227, 238, 502, 681, 702 |
| HinfI | GANTC | 5 cut(s) | 8, 17, 52, 257, 292 |
| HpaII | CCGG | 1 cut(s) | 101 |
| HphI | GGTGA | 1 cut(s) | 910 |
| Hpy166II | GTNNAC | 3 cut(s) | 734, 877, 952 |
| Hpy188I | TCNGA | 2 cut(s) | 22, 182 |
| Hpy188III | TCNNGA | 7 cut(s) | 151, 367, 427, 470, 569, 791, 837 |
| Hpy8I | GTNNAC | 3 cut(s) | 734, 877, 952 |
| HpyAV | CCTTC | 3 cut(s) | 313, 566, 739 |
| HpyCH4III | ACNGT | 3 cut(s) | 32, 341, 560 |
| HpyCH4IV | ACGT | 5 cut(s) | 541, 601, 619, 730, 909 |
| HpyCH4V | TGCA | 7 cut(s) | 209, 488, 734, 813, 884, 952, 965 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 235, 508, 819 |
| HpyF3I | CTNAG | 5 cut(s) | 179, 405, 459, 714, 860 |
| HpySE526I | ACGT | 5 cut(s) | 541, 601, 619, 730, 909 |
| Hsp92I | GRCGYC | 2 cut(s) | 681, 702 |
| Hsp92II | CATG | 8 cut(s) | 137, 416, 473, 536, 688, 695, 794, 925 |
| HspAI | GCGC | 5 cut(s) | 227, 238, 502, 681, 702 |
| KasI | GGCGCC | 2 cut(s) | 680, 701 |
| Kzo9I | GATC | 3 cut(s) | 198, 363, 782 |
| LguI | GCTCTTC | 1 cut(s) | 228 |
| LmnI | GCTCC | 5 cut(s) | 508, 590, 659, 749, 865 |
| LpnPI | CCDG | 8 cut(s) | 74, 101, 114, 282, 554, 829, 838, 872 |
| Lsp1109I | GCAGC | 1 cut(s) | 949 |
| LweI | GCATC | 3 cut(s) | 144, 196, 949 |
| MaeI | CTAG | 4 cut(s) | 230, 519, 786, 830 |
| MaeII | ACGT | 5 cut(s) | 541, 601, 619, 730, 909 |
| MaeIII | GTNAC | 1 cut(s) | 37 |
| MalI | GATC | 3 cut(s) | 200, 365, 784 |
| MbiI | CCGCTC | 2 cut(s) | 511, 593 |
| MboI | GATC | 3 cut(s) | 198, 363, 782 |
| MboII | GAAGA | 6 cut(s) | 245, 301, 899, 902, 905, 953 |
| MfeI | CAATTG | 1 cut(s) | 740 |
| MflI | RGATCY | 1 cut(s) | 782 |
| MhlI | GDGCHC | 2 cut(s) | 736, 954 |
| MluCI | AATT | 5 cut(s) | 282, 433, 439, 478, 740 |
| Mly113I | GGCGCC | 2 cut(s) | 681, 702 |
| MlyI | GAGTC | 3 cut(s) | 2, 11, 286 |
| MmeI | TCCRAC | 1 cut(s) | 337 |
| MseI | TTAA | 2 cut(s) | 912, 976 |
| MslI | CAYNNNNRTG | 3 cut(s) | 425, 777, 957 |
| MspI | CCGG | 1 cut(s) | 101 |
| MspR9I | CCNGG | 2 cut(s) | 89, 101 |
| MunI | CAATTG | 1 cut(s) | 740 |
| Mva1269I | GAATGC | 1 cut(s) | 465 |
| MvaI | CCWGG | 1 cut(s) | 89 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 235, 508, 819 |
| NarI | GGCGCC | 2 cut(s) | 681, 702 |
| NciI | CCSGG | 1 cut(s) | 101 |
| NcoI | CCATGG | 2 cut(s) | 684, 921 |
| NdeI | CATATG | 1 cut(s) | 165 |
| NdeII | GATC | 3 cut(s) | 198, 363, 782 |
| NlaIII | CATG | 8 cut(s) | 137, 416, 473, 536, 688, 695, 794, 925 |
| NlaIV | GGNNCC | 8 cut(s) | 93, 515, 549, 661, 682, 703, 751, 857 |
| NspI | RCATGY | 1 cut(s) | 137 |
| PaeI | GCATGC | 1 cut(s) | 137 |
| PagI | TCATGA | 2 cut(s) | 469, 790 |
| PceI | AGGCCT | 1 cut(s) | 448 |
| PciSI | GCTCTTC | 1 cut(s) | 228 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 727 |
| PctI | GAATGC | 1 cut(s) | 465 |
| PfeI | GAWTC | 2 cut(s) | 52, 257 |
| PkrI | GCNGC | 1 cut(s) | 964 |
| PleI | GAGTC | 3 cut(s) | 2, 11, 286 |
| PluTI | GGCGCC | 2 cut(s) | 684, 705 |
| PmaCI | CACGTG | 2 cut(s) | 602, 620 |
| PmlI | CACGTG | 2 cut(s) | 602, 620 |
| PpsI | GAGTC | 3 cut(s) | 2, 11, 286 |
| Ppu21I | YACGTR | 2 cut(s) | 602, 620 |
| PpuMI | RGGWCCY | 1 cut(s) | 856 |
| PsiI | TTATAA | 2 cut(s) | 438, 483 |
| Psp5II | RGGWCCY | 1 cut(s) | 856 |
| Psp6I | CCWGG | 1 cut(s) | 87 |
| PspCI | CACGTG | 2 cut(s) | 602, 620 |
| PspEI | GGTNACC | 1 cut(s) | 37 |
| PspGI | CCWGG | 1 cut(s) | 87 |
| PspN4I | GGNNCC | 8 cut(s) | 93, 515, 549, 661, 682, 703, 751, 857 |
| PspPI | GGNCC | 2 cut(s) | 548, 856 |
| PspPPI | RGGWCCY | 1 cut(s) | 856 |
| PstI | CTGCAG | 1 cut(s) | 967 |
| PsuI | RGATCY | 1 cut(s) | 782 |
| RsaI | GTAC | 2 cut(s) | 343, 878 |
| RsaNI | GTAC | 2 cut(s) | 342, 877 |
| RseI | CAYNNNNRTG | 3 cut(s) | 425, 777, 957 |
| SapI | GCTCTTC | 1 cut(s) | 228 |
| SaqAI | TTAA | 2 cut(s) | 912, 976 |
| SatI | GCNGC | 1 cut(s) | 963 |
| Sau3AI | GATC | 3 cut(s) | 198, 363, 782 |
| Sau96I | GGNCC | 2 cut(s) | 548, 856 |
| SchI | GAGTC | 3 cut(s) | 2, 11, 286 |
| ScrFI | CCNGG | 2 cut(s) | 89, 101 |
| SduI | GDGCHC | 2 cut(s) | 736, 954 |
| SfaNI | GCATC | 3 cut(s) | 144, 196, 949 |
| SfcI | CTRYAG | 1 cut(s) | 963 |
| SfoI | GGCGCC | 2 cut(s) | 682, 703 |
| SinI | GGWCC | 2 cut(s) | 548, 856 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 425, 777, 957 |
| SmlI | CTYRAG | 1 cut(s) | 138 |
| SmoI | CTYRAG | 1 cut(s) | 138 |
| SphI | GCATGC | 1 cut(s) | 137 |
| Sse9I | AATT | 5 cut(s) | 282, 433, 439, 478, 740 |
| SseBI | AGGCCT | 1 cut(s) | 448 |
| SsiI | CCGC | 3 cut(s) | 511, 580, 593 |
| SspDI | GGCGCC | 2 cut(s) | 680, 701 |
| SspI | AATATT | 1 cut(s) | 75 |
| SspMI | CTAG | 4 cut(s) | 230, 519, 786, 830 |
| StuI | AGGCCT | 1 cut(s) | 448 |
| StyD4I | CCNGG | 2 cut(s) | 87, 99 |
| StyI | CCWWGG | 4 cut(s) | 66, 518, 684, 921 |
| TaaI | ACNGT | 3 cut(s) | 32, 341, 560 |
| TaiI | ACGT | 5 cut(s) | 544, 604, 622, 733, 912 |
| TaqI | TCGA | 2 cut(s) | 197, 775 |
| TasI | AATT | 5 cut(s) | 282, 433, 439, 478, 740 |
| TfiI | GAWTC | 2 cut(s) | 52, 257 |
| Tru1I | TTAA | 2 cut(s) | 912, 976 |
| Tru9I | TTAA | 2 cut(s) | 912, 976 |
| TseI | GCWGC | 1 cut(s) | 962 |
| TspDTI | ATGAA | 3 cut(s) | 365, 458, 960 |
| TspGWI | ACGGA | 2 cut(s) | 376, 638 |
| VneI | GTGCAC | 2 cut(s) | 732, 950 |
| VpaK11BI | GGWCC | 2 cut(s) | 548, 856 |
| XceI | RCATGY | 1 cut(s) | 137 |
| XmaJI | CCTAGG | 1 cut(s) | 518 |
| XspI | CTAG | 4 cut(s) | 230, 519, 786, 830 |