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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 585, 630 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 693 |
| Acc36I | ACCTGC | 1 cut(s) | 720 |
| AccB1I | GGYRCC | 1 cut(s) | 121 |
| AciI | CCGC | 1 cut(s) | 706 |
| AclWI | GGATC | 2 cut(s) | 141, 518 |
| AcvI | CACGTG | 1 cut(s) | 767 |
| AcyI | GRCGYC | 1 cut(s) | 190 |
| AdeI | CACNNNGTG | 1 cut(s) | 752 |
| AfeI | AGCGCT | 1 cut(s) | 269 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 64, 393, 619, 644, 715 |
| AflII | CTTAAG | 1 cut(s) | 665 |
| AflIII | ACRYGT | 1 cut(s) | 764 |
| AgsI | TTSAA | 5 cut(s) | 96, 307, 314, 343, 591 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 410 |
| AjnI | CCWGG | 1 cut(s) | 117 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 255, 287 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 125, 157 |
| AluBI | AGCT | 5 cut(s) | 247, 371, 427, 529, 551 |
| AluI | AGCT | 5 cut(s) | 247, 371, 427, 529, 551 |
| AlwI | GGATC | 2 cut(s) | 141, 518 |
| Aor51HI | AGCGCT | 1 cut(s) | 269 |
| ApeKI | GCWGC | 1 cut(s) | 548 |
| AspLEI | GCGC | 3 cut(s) | 270, 330, 740 |
| AspS9I | GGNCC | 1 cut(s) | 695 |
| AsuC2I | CCSGG | 1 cut(s) | 131 |
| AvaII | GGWCC | 1 cut(s) | 695 |
| BanI | GGYRCC | 1 cut(s) | 121 |
| BauI | CACGAG | 2 cut(s) | 514, 572 |
| BbrPI | CACGTG | 1 cut(s) | 767 |
| BbvI | GCAGC | 1 cut(s) | 560 |
| BciT130I | CCWGG | 1 cut(s) | 119 |
| BcnI | CCSGG | 1 cut(s) | 131 |
| BfaI | CTAG | 2 cut(s) | 15, 260 |
| BfmI | CTRYAG | 2 cut(s) | 380, 546 |
| BfoI | RGCGCY | 1 cut(s) | 271 |
| BfrI | CTTAAG | 1 cut(s) | 665 |
| BfuAI | ACCTGC | 1 cut(s) | 720 |
| BisI | GCNGC | 1 cut(s) | 549 |
| BlsI | GCNGC | 1 cut(s) | 550 |
| Bme1390I | CCNGG | 2 cut(s) | 119, 131 |
| Bme18I | GGWCC | 1 cut(s) | 695 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 410 |
| BmgT120I | GGNCC | 1 cut(s) | 695 |
| BmiI | GGNNCC | 3 cut(s) | 123, 662, 696 |
| BmrFI | CCNGG | 2 cut(s) | 119, 131 |
| BmsI | GCATC | 1 cut(s) | 174 |
| BpuEI | CTTGAG | 1 cut(s) | 153 |
| BpuMI | CCSGG | 1 cut(s) | 131 |
| BsaAI | YACGTR | 1 cut(s) | 767 |
| BsaHI | GRCGYC | 1 cut(s) | 190 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 763 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 64, 393, 619, 644, 715 |
| Bse3DI | GCAATG | 2 cut(s) | 283, 763 |
| BseBI | CCWGG | 1 cut(s) | 119 |
| BseGI | GGATG | 1 cut(s) | 241 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 64, 393, 619, 644, 715 |
| BseMI | GCAATG | 2 cut(s) | 283, 763 |
| BseMII | CTCAG | 2 cut(s) | 223, 543 |
| BseRI | GAGGAG | 1 cut(s) | 284 |
| BseXI | GCAGC | 1 cut(s) | 560 |
| BshNI | GGYRCC | 1 cut(s) | 121 |
| BsiSI | CCGG | 1 cut(s) | 131 |
| BslFI | GGGAC | 1 cut(s) | 699 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 64, 393, 619, 644, 715 |
| BsmFI | GGGAC | 1 cut(s) | 699 |
| Bsp143I | GATC | 3 cut(s) | 133, 228, 510 |
| BspACI | CCGC | 1 cut(s) | 706 |
| BspCNI | CTCAG | 2 cut(s) | 222, 544 |
| BspHI | TCATGA | 1 cut(s) | 616 |
| BspLI | GGNNCC | 3 cut(s) | 123, 662, 696 |
| BspMAI | CTGCAG | 1 cut(s) | 550 |
| BspMI | ACCTGC | 1 cut(s) | 720 |
| BspPI | GGATC | 2 cut(s) | 141, 518 |
| BspQI | GCTCTTC | 1 cut(s) | 258 |
| BspT107I | GGYRCC | 1 cut(s) | 121 |
| BspTI | CTTAAG | 1 cut(s) | 665 |
| BsrDI | GCAATG | 2 cut(s) | 283, 763 |
| BssMI | GATC | 3 cut(s) | 133, 228, 510 |
| BssNI | GRCGYC | 1 cut(s) | 190 |
| BssSI | CACGAG | 2 cut(s) | 514, 572 |
| Bst2BI | CACGAG | 2 cut(s) | 514, 572 |
| Bst2UI | CCWGG | 1 cut(s) | 119 |
| Bst4CI | ACNGT | 2 cut(s) | 62, 384 |
| Bst6I | CTCTTC | 1 cut(s) | 258 |
| BstACI | GRCGYC | 1 cut(s) | 190 |
| BstAFI | CTTAAG | 1 cut(s) | 665 |
| BstBAI | YACGTR | 1 cut(s) | 767 |
| BstC8I | GCNNGC | 1 cut(s) | 165 |
| BstDEI | CTNAG | 2 cut(s) | 209, 552 |
| BstEII | GGTNACC | 1 cut(s) | 67 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 617 |
| BstF5I | GGATG | 1 cut(s) | 241 |
| BstH2I | RGCGCY | 1 cut(s) | 271 |
| BstHHI | GCGC | 3 cut(s) | 270, 330, 740 |
| BstKTI | GATC | 3 cut(s) | 136, 231, 513 |
| BstMBI | GATC | 3 cut(s) | 133, 228, 510 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 735 |
| BstNI | CCWGG | 1 cut(s) | 119 |
| BstNSI | RCATGY | 1 cut(s) | 167 |
| BstPI | GGTNACC | 1 cut(s) | 67 |
| BstSCI | CCNGG | 2 cut(s) | 117, 129 |
| BstSFI | CTRYAG | 2 cut(s) | 380, 546 |
| BstV1I | GCAGC | 1 cut(s) | 560 |
| BtsCI | GGATG | 1 cut(s) | 241 |
| BveI | ACCTGC | 1 cut(s) | 720 |
| Cac8I | GCNNGC | 1 cut(s) | 165 |
| CciI | TCATGA | 1 cut(s) | 616 |
| CfoI | GCGC | 3 cut(s) | 270, 330, 740 |
| Cfr13I | GGNCC | 1 cut(s) | 695 |
| CseI | GACGC | 2 cut(s) | 198, 657 |
| CviAII | CATG | 7 cut(s) | 31, 137, 164, 388, 560, 617, 749 |
| CviJI | RGCY | 7 cut(s) | 247, 371, 427, 464, 529, 551, 612 |
| CviKI_1 | RGCY | 7 cut(s) | 247, 371, 427, 464, 529, 551, 612 |
| DdeI | CTNAG | 2 cut(s) | 209, 552 |
| DpnI | GATC | 3 cut(s) | 135, 230, 512 |
| DpnII | GATC | 3 cut(s) | 133, 228, 510 |
| DraIII | CACNNNGTG | 1 cut(s) | 752 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 693 |
| DriI | GACNNNNNGTC | 1 cut(s) | 410 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 693 |
| Eam1104I | CTCTTC | 1 cut(s) | 258 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 410 |
| EarI | CTCTTC | 1 cut(s) | 258 |
| Eco47I | GGWCC | 1 cut(s) | 695 |
| Eco47III | AGCGCT | 1 cut(s) | 269 |
| Eco72I | CACGTG | 1 cut(s) | 767 |
| Eco91I | GGTNACC | 1 cut(s) | 67 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 617 |
| EcoO65I | GGTNACC | 1 cut(s) | 67 |
| EcoRII | CCWGG | 1 cut(s) | 117 |
| FaeI | CATG | 7 cut(s) | 34, 140, 167, 391, 563, 620, 752 |
| FaqI | GGGAC | 1 cut(s) | 699 |
| FatI | CATG | 7 cut(s) | 30, 136, 163, 387, 559, 616, 748 |
| Fnu4HI | GCNGC | 1 cut(s) | 549 |
| FokI | GGATG | 1 cut(s) | 248 |
| Fsp4HI | GCNGC | 1 cut(s) | 549 |
| FspBI | CTAG | 2 cut(s) | 15, 260 |
| GlaI | GCGC | 3 cut(s) | 269, 329, 739 |
| GluI | GCNGC | 1 cut(s) | 549 |
| HaeII | RGCGCY | 1 cut(s) | 271 |
| HapII | CCGG | 1 cut(s) | 131 |
| HgaI | GACGC | 2 cut(s) | 198, 657 |
| HhaI | GCGC | 3 cut(s) | 270, 330, 740 |
| Hin1I | GRCGYC | 1 cut(s) | 190 |
| Hin1II | CATG | 7 cut(s) | 34, 140, 167, 391, 563, 620, 752 |
| Hin6I | GCGC | 3 cut(s) | 268, 328, 738 |
| HinP1I | GCGC | 3 cut(s) | 268, 328, 738 |
| HinfI | GANTC | 3 cut(s) | 18, 38, 287 |
| HpaII | CCGG | 1 cut(s) | 131 |
| Hpy166II | GTNNAC | 1 cut(s) | 404 |
| Hpy188I | TCNGA | 4 cut(s) | 52, 212, 367, 791 |
| Hpy188III | TCNNGA | 5 cut(s) | 181, 514, 574, 591, 617 |
| Hpy8I | GTNNAC | 1 cut(s) | 404 |
| Hpy99I | CGWCG | 1 cut(s) | 192 |
| HpyAV | CCTTC | 3 cut(s) | 301, 623, 713 |
| HpyCH4III | ACNGT | 2 cut(s) | 62, 384 |
| HpyCH4IV | ACGT | 2 cut(s) | 688, 766 |
| HpyCH4V | TGCA | 2 cut(s) | 548, 635 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 735 |
| HpyF3I | CTNAG | 2 cut(s) | 209, 552 |
| HpySE526I | ACGT | 2 cut(s) | 688, 766 |
| Hsp92I | GRCGYC | 1 cut(s) | 190 |
| Hsp92II | CATG | 7 cut(s) | 34, 140, 167, 391, 563, 620, 752 |
| HspAI | GCGC | 3 cut(s) | 268, 328, 738 |
| Kzo9I | GATC | 3 cut(s) | 133, 228, 510 |
| LguI | GCTCTTC | 1 cut(s) | 258 |
| LpnPI | CCDG | 8 cut(s) | 30, 104, 131, 144, 312, 423, 489, 715 |
| Lsp1109I | GCAGC | 1 cut(s) | 560 |
| LweI | GCATC | 1 cut(s) | 174 |
| MaeI | CTAG | 2 cut(s) | 15, 260 |
| MaeII | ACGT | 2 cut(s) | 688, 766 |
| MaeIII | GTNAC | 2 cut(s) | 67, 412 |
| MalI | GATC | 3 cut(s) | 135, 230, 512 |
| MboI | GATC | 3 cut(s) | 133, 228, 510 |
| MboII | GAAGA | 1 cut(s) | 275 |
| MluCI | AATT | 5 cut(s) | 361, 429, 580, 586, 625 |
| MlyI | GAGTC | 2 cut(s) | 12, 32 |
| MseI | TTAA | 1 cut(s) | 666 |
| MslI | CAYNNNNRTG | 1 cut(s) | 572 |
| MspA1I | CMGCKG | 1 cut(s) | 551 |
| MspCI | CTTAAG | 1 cut(s) | 665 |
| MspI | CCGG | 1 cut(s) | 131 |
| MspR9I | CCNGG | 2 cut(s) | 119, 131 |
| MvaI | CCWGG | 1 cut(s) | 119 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 735 |
| NciI | CCSGG | 1 cut(s) | 131 |
| NdeII | GATC | 3 cut(s) | 133, 228, 510 |
| NlaIII | CATG | 7 cut(s) | 34, 140, 167, 391, 563, 620, 752 |
| NlaIV | GGNNCC | 3 cut(s) | 123, 662, 696 |
| NmuCI | GTSAC | 1 cut(s) | 412 |
| NspI | RCATGY | 1 cut(s) | 167 |
| PaeI | GCATGC | 1 cut(s) | 167 |
| PagI | TCATGA | 1 cut(s) | 616 |
| PciSI | GCTCTTC | 1 cut(s) | 258 |
| PfeI | GAWTC | 1 cut(s) | 287 |
| PkrI | GCNGC | 1 cut(s) | 550 |
| PleI | GAGTC | 2 cut(s) | 12, 32 |
| PmaCI | CACGTG | 1 cut(s) | 767 |
| PmlI | CACGTG | 1 cut(s) | 767 |
| PpsI | GAGTC | 2 cut(s) | 12, 32 |
| Ppu21I | YACGTR | 1 cut(s) | 767 |
| PsiI | TTATAA | 2 cut(s) | 585, 630 |
| Psp6I | CCWGG | 1 cut(s) | 117 |
| PspCI | CACGTG | 1 cut(s) | 767 |
| PspEI | GGTNACC | 1 cut(s) | 67 |
| PspGI | CCWGG | 1 cut(s) | 117 |
| PspN4I | GGNNCC | 3 cut(s) | 123, 662, 696 |
| PspPI | GGNCC | 1 cut(s) | 695 |
| PstI | CTGCAG | 1 cut(s) | 550 |
| PvuII | CAGCTG | 1 cut(s) | 551 |
| RseI | CAYNNNNRTG | 1 cut(s) | 572 |
| SapI | GCTCTTC | 1 cut(s) | 258 |
| SaqAI | TTAA | 1 cut(s) | 666 |
| SatI | GCNGC | 1 cut(s) | 549 |
| Sau3AI | GATC | 3 cut(s) | 133, 228, 510 |
| Sau96I | GGNCC | 1 cut(s) | 695 |
| SchI | GAGTC | 2 cut(s) | 12, 32 |
| ScrFI | CCNGG | 2 cut(s) | 119, 131 |
| SfaNI | GCATC | 1 cut(s) | 174 |
| SfcI | CTRYAG | 2 cut(s) | 380, 546 |
| SinI | GGWCC | 1 cut(s) | 695 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 572 |
| SmlI | CTYRAG | 2 cut(s) | 168, 665 |
| SmoI | CTYRAG | 2 cut(s) | 168, 665 |
| SphI | GCATGC | 1 cut(s) | 167 |
| Sse9I | AATT | 5 cut(s) | 361, 429, 580, 586, 625 |
| SsiI | CCGC | 1 cut(s) | 706 |
| SspI | AATATT | 1 cut(s) | 105 |
| SspMI | CTAG | 2 cut(s) | 15, 260 |
| StyD4I | CCNGG | 2 cut(s) | 117, 129 |
| TaaI | ACNGT | 2 cut(s) | 62, 384 |
| TaiI | ACGT | 2 cut(s) | 691, 769 |
| TaqI | TCGA | 3 cut(s) | 5, 21, 227 |
| TasI | AATT | 5 cut(s) | 361, 429, 580, 586, 625 |
| TfiI | GAWTC | 1 cut(s) | 287 |
| Tru1I | TTAA | 1 cut(s) | 666 |
| Tru9I | TTAA | 1 cut(s) | 666 |
| TseFI | GTSAC | 1 cut(s) | 412 |
| TseI | GCWGC | 1 cut(s) | 548 |
| Tsp45I | GTSAC | 1 cut(s) | 412 |
| TspDTI | ATGAA | 3 cut(s) | 24, 512, 605 |
| TspGWI | ACGGA | 1 cut(s) | 523 |
| Vha464I | CTTAAG | 1 cut(s) | 665 |
| VpaK11BI | GGWCC | 1 cut(s) | 695 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 617 |
| XceI | RCATGY | 1 cut(s) | 167 |
| XspI | CTAG | 2 cut(s) | 15, 260 |