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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1125 |
| Acc65I | GGTACC | 1 cut(s) | 33 |
| AccB1I | GGYRCC | 2 cut(s) | 33, 1080 |
| AccII | CGCG | 2 cut(s) | 471, 1065 |
| AciI | CCGC | 5 cut(s) | 72, 115, 126, 148, 550 |
| AclWI | GGATC | 3 cut(s) | 338, 947, 1017 |
| AcoI | YGGCCR | 2 cut(s) | 58, 190 |
| AcsI | RAATTY | 2 cut(s) | 278, 427 |
| AcuI | CTGAAG | 1 cut(s) | 242 |
| AcyI | GRCGYC | 2 cut(s) | 1081, 1197 |
| AdeI | CACNNNGTG | 1 cut(s) | 1378 |
| AfaI | GTAC | 2 cut(s) | 35, 188 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 154, 814, 1076 |
| AflIII | ACRYGT | 1 cut(s) | 469 |
| AgsI | TTSAA | 5 cut(s) | 304, 386, 423, 511, 846 |
| AjnI | CCWGG | 2 cut(s) | 600, 1180 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 759, 791 |
| AleI | CACNNNNGTG | 1 cut(s) | 128 |
| AluBI | AGCT | 8 cut(s) | 205, 236, 501, 533, 626, 958, 1319, 1370 |
| AluI | AGCT | 8 cut(s) | 205, 236, 501, 533, 626, 958, 1319, 1370 |
| Alw21I | GWGCWC | 2 cut(s) | 960, 1321 |
| Alw26I | GTCTC | 2 cut(s) | 444, 763 |
| AlwI | GGATC | 3 cut(s) | 338, 947, 1017 |
| Ama87I | CYCGRG | 1 cut(s) | 590 |
| AoxI | GGCC | 4 cut(s) | 48, 58, 190, 564 |
| ApeKI | GCWGC | 6 cut(s) | 111, 236, 239, 320, 533, 650 |
| ApoI | RAATTY | 2 cut(s) | 278, 427 |
| Asp718I | GGTACC | 1 cut(s) | 33 |
| AspLEI | GCGC | 2 cut(s) | 1067, 1083 |
| AspS9I | GGNCC | 1 cut(s) | 463 |
| AsuHPI | GGTGA | 6 cut(s) | 14, 46, 286, 464, 1205, 1327 |
| AvaI | CYCGRG | 1 cut(s) | 590 |
| AvaII | GGWCC | 1 cut(s) | 463 |
| BaeGI | GKGCMC | 1 cut(s) | 1306 |
| BanI | GGYRCC | 2 cut(s) | 33, 1080 |
| BanII | GRGCYC | 2 cut(s) | 960, 1321 |
| BauI | CACGAG | 1 cut(s) | 1320 |
| BbsI | GAAGAC | 2 cut(s) | 744, 872 |
| Bbv12I | GWGCWC | 2 cut(s) | 960, 1321 |
| BbvI | GCAGC | 6 cut(s) | 123, 223, 226, 307, 520, 662 |
| BceAI | ACGGC | 2 cut(s) | 113, 205 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 911, 945 |
| BciT130I | CCWGG | 2 cut(s) | 602, 1182 |
| BciVI | GTATCC | 1 cut(s) | 1102 |
| BclI | TGATCA | 1 cut(s) | 1294 |
| BcoDI | GTCTC | 2 cut(s) | 444, 763 |
| BfaI | CTAG | 8 cut(s) | 233, 284, 443, 578, 597, 809, 1125, 1406 |
| BfmI | CTRYAG | 2 cut(s) | 339, 930 |
| BfoI | RGCGCY | 1 cut(s) | 1084 |
| BfuI | GTATCC | 1 cut(s) | 1102 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 659 |
| BisI | GCNGC | 8 cut(s) | 112, 115, 237, 240, 321, 534, 550, 651 |
| BlsI | GCNGC | 8 cut(s) | 113, 116, 238, 241, 322, 535, 551, 652 |
| Bme1390I | CCNGG | 2 cut(s) | 602, 1182 |
| Bme18I | GGWCC | 1 cut(s) | 463 |
| BmeT110I | CYCGRG | 1 cut(s) | 590 |
| BmgT120I | GGNCC | 1 cut(s) | 463 |
| BmiI | GGNNCC | 3 cut(s) | 35, 465, 1082 |
| BmrFI | CCNGG | 2 cut(s) | 602, 1182 |
| BmsI | GCATC | 3 cut(s) | 159, 565, 1216 |
| BpiI | GAAGAC | 2 cut(s) | 744, 872 |
| BpmI | CTGGAG | 1 cut(s) | 698 |
| BpuEI | CTTGAG | 4 cut(s) | 29, 479, 545, 612 |
| Bsa29I | ATCGAT | 1 cut(s) | 1247 |
| BsaHI | GRCGYC | 2 cut(s) | 1081, 1197 |
| BsaI | GGTCTC | 2 cut(s) | 444, 763 |
| BsaJI | CCNNGG | 2 cut(s) | 1026, 1180 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 479, 509 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 154, 814, 1076 |
| Bse118I | RCCGGY | 1 cut(s) | 56 |
| Bse1I | ACTGG | 2 cut(s) | 37, 715 |
| BseBI | CCWGG | 2 cut(s) | 602, 1182 |
| BseCI | ATCGAT | 1 cut(s) | 1247 |
| BseDI | CCNNGG | 2 cut(s) | 1026, 1180 |
| BseGI | GGATG | 6 cut(s) | 79, 681, 709, 823, 941, 996 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 154, 814, 1076 |
| BseMII | CTCAG | 4 cut(s) | 43, 87, 220, 1248 |
| BseNI | ACTGG | 2 cut(s) | 37, 715 |
| BseRI | GAGGAG | 1 cut(s) | 500 |
| BseSI | GKGCMC | 1 cut(s) | 1306 |
| BseXI | GCAGC | 6 cut(s) | 123, 223, 226, 307, 520, 662 |
| Bsh1236I | CGCG | 2 cut(s) | 471, 1065 |
| Bsh1285I | CGRYCG | 2 cut(s) | 76, 148 |
| BshFI | GGCC | 4 cut(s) | 50, 60, 192, 566 |
| BshNI | GGYRCC | 2 cut(s) | 33, 1080 |
| BshVI | ATCGAT | 1 cut(s) | 1247 |
| BsiEI | CGRYCG | 2 cut(s) | 76, 148 |
| BsiHKAI | GWGCWC | 2 cut(s) | 960, 1321 |
| BsiHKCI | CYCGRG | 1 cut(s) | 590 |
| BsiSI | CCGG | 1 cut(s) | 57 |
| BslFI | GGGAC | 1 cut(s) | 25 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 154, 814, 1076 |
| BsmAI | GTCTC | 2 cut(s) | 444, 763 |
| BsmFI | GGGAC | 1 cut(s) | 25 |
| BsnI | GGCC | 4 cut(s) | 50, 60, 192, 566 |
| Bso31I | GGTCTC | 2 cut(s) | 444, 763 |
| BsoBI | CYCGRG | 1 cut(s) | 590 |
| Bsp1286I | GDGCHC | 3 cut(s) | 960, 1306, 1321 |
| Bsp143I | GATC | 8 cut(s) | 92, 253, 330, 939, 1022, 1294, 1390, 1402 |
| BspACI | CCGC | 5 cut(s) | 72, 115, 126, 148, 550 |
| BspANI | GGCC | 4 cut(s) | 50, 60, 192, 566 |
| BspCNI | CTCAG | 4 cut(s) | 42, 88, 219, 1249 |
| BspDI | ATCGAT | 1 cut(s) | 1247 |
| BspFNI | CGCG | 2 cut(s) | 471, 1065 |
| BspHI | TCATGA | 1 cut(s) | 952 |
| BspLI | GGNNCC | 3 cut(s) | 35, 465, 1082 |
| BspMAI | CTGCAG | 1 cut(s) | 934 |
| BspPI | GGATC | 3 cut(s) | 338, 947, 1017 |
| BspT107I | GGYRCC | 2 cut(s) | 33, 1080 |
| BspTNI | GGTCTC | 2 cut(s) | 444, 763 |
| BsrFI | RCCGGY | 1 cut(s) | 56 |
| BsrI | ACTGG | 2 cut(s) | 37, 715 |
| BssAI | RCCGGY | 1 cut(s) | 56 |
| BssECI | CCNNGG | 2 cut(s) | 1026, 1180 |
| BssMI | GATC | 8 cut(s) | 92, 253, 330, 939, 1022, 1294, 1390, 1402 |
| BssNI | GRCGYC | 2 cut(s) | 1081, 1197 |
| BssSI | CACGAG | 1 cut(s) | 1320 |
| Bst2BI | CACGAG | 1 cut(s) | 1320 |
| Bst2UI | CCWGG | 2 cut(s) | 602, 1182 |
| Bst4CI | ACNGT | 2 cut(s) | 364, 616 |
| BstACI | GRCGYC | 2 cut(s) | 1081, 1197 |
| BstC8I | GCNNGC | 3 cut(s) | 524, 554, 624 |
| BstDEI | CTNAG | 8 cut(s) | 29, 96, 206, 655, 906, 1103, 1209, 1257 |
| BstDSI | CCRYGG | 1 cut(s) | 1026 |
| BstEII | GGTNACC | 1 cut(s) | 452 |
| BstF5I | GGATG | 6 cut(s) | 79, 681, 709, 823, 941, 996 |
| BstFNI | CGCG | 2 cut(s) | 471, 1065 |
| BstH2I | RGCGCY | 1 cut(s) | 1084 |
| BstHHI | GCGC | 2 cut(s) | 1067, 1083 |
| BstKTI | GATC | 8 cut(s) | 95, 256, 333, 942, 1025, 1297, 1393, 1405 |
| BstMAI | GTCTC | 2 cut(s) | 444, 763 |
| BstMBI | GATC | 8 cut(s) | 92, 253, 330, 939, 1022, 1294, 1390, 1402 |
| BstMCI | CGRYCG | 2 cut(s) | 76, 148 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 108, 659, 1087, 1367 |
| BstNI | CCWGG | 2 cut(s) | 602, 1182 |
| BstNSI | RCATGY | 4 cut(s) | 106, 482, 526, 540 |
| BstPI | GGTNACC | 1 cut(s) | 452 |
| BstSCI | CCNGG | 2 cut(s) | 600, 1180 |
| BstSFI | CTRYAG | 2 cut(s) | 339, 930 |
| BstSLI | GKGCMC | 1 cut(s) | 1306 |
| BstUI | CGCG | 2 cut(s) | 471, 1065 |
| BstV1I | GCAGC | 6 cut(s) | 123, 223, 226, 307, 520, 662 |
| BstV2I | GAAGAC | 2 cut(s) | 744, 872 |
| BstX2I | RGATCY | 2 cut(s) | 330, 1022 |
| BstYI | RGATCY | 2 cut(s) | 330, 1022 |
| Bsu15I | ATCGAT | 1 cut(s) | 1247 |
| BsuI | GTATCC | 1 cut(s) | 1102 |
| BsuRI | GGCC | 4 cut(s) | 50, 60, 192, 566 |
| BsuTUI | ATCGAT | 1 cut(s) | 1247 |
| BtgI | CCRYGG | 1 cut(s) | 1026 |
| BtgZI | GCGATG | 1 cut(s) | 866 |
| BtsCI | GGATG | 6 cut(s) | 79, 681, 709, 823, 941, 996 |
| BtsIMutI | CAGTG | 1 cut(s) | 214 |
| Cac8I | GCNNGC | 3 cut(s) | 524, 554, 624 |
| CciI | TCATGA | 1 cut(s) | 952 |
| CfoI | GCGC | 2 cut(s) | 1067, 1083 |
| Cfr10I | RCCGGY | 1 cut(s) | 56 |
| Cfr13I | GGNCC | 1 cut(s) | 463 |
| ClaI | ATCGAT | 1 cut(s) | 1247 |
| CseI | GACGC | 1 cut(s) | 1205 |
| Csp6I | GTAC | 2 cut(s) | 34, 187 |
| CviAII | CATG | 8 cut(s) | 103, 154, 479, 518, 523, 537, 953, 989 |
| CviQI | GTAC | 2 cut(s) | 34, 187 |
| DdeI | CTNAG | 8 cut(s) | 29, 96, 206, 655, 906, 1103, 1209, 1257 |
| DinI | GGCGCC | 1 cut(s) | 1082 |
| DpnI | GATC | 8 cut(s) | 94, 255, 332, 941, 1024, 1296, 1392, 1404 |
| DpnII | GATC | 8 cut(s) | 92, 253, 330, 939, 1022, 1294, 1390, 1402 |
| DraI | TTTAAA | 1 cut(s) | 1234 |
| DraIII | CACNNNGTG | 1 cut(s) | 1378 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1125 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1125 |
| EaeI | YGGCCR | 2 cut(s) | 58, 190 |
| Ecl136II | GAGCTC | 2 cut(s) | 958, 1319 |
| Eco24I | GRGCYC | 2 cut(s) | 960, 1321 |
| Eco31I | GGTCTC | 2 cut(s) | 444, 763 |
| Eco47I | GGWCC | 1 cut(s) | 463 |
| Eco53kI | GAGCTC | 2 cut(s) | 958, 1319 |
| Eco57I | CTGAAG | 1 cut(s) | 242 |
| Eco88I | CYCGRG | 1 cut(s) | 590 |
| Eco91I | GGTNACC | 1 cut(s) | 452 |
| EcoICRI | GAGCTC | 2 cut(s) | 958, 1319 |
| EcoO109I | RGGNCCY | 1 cut(s) | 463 |
| EcoO65I | GGTNACC | 1 cut(s) | 452 |
| EcoRII | CCWGG | 2 cut(s) | 600, 1180 |
| EcoT38I | GRGCYC | 2 cut(s) | 960, 1321 |
| EgeI | GGCGCC | 1 cut(s) | 1082 |
| EheI | GGCGCC | 1 cut(s) | 1082 |
| FaeI | CATG | 8 cut(s) | 106, 157, 482, 521, 526, 540, 956, 992 |
| FaqI | GGGAC | 1 cut(s) | 25 |
| FatI | CATG | 8 cut(s) | 102, 153, 478, 517, 522, 536, 952, 988 |
| FauNDI | CATATG | 1 cut(s) | 699 |
| FbaI | TGATCA | 1 cut(s) | 1294 |
| Fnu4HI | GCNGC | 8 cut(s) | 112, 115, 237, 240, 321, 534, 550, 651 |
| FokI | GGATG | 6 cut(s) | 66, 668, 716, 830, 948, 983 |
| FriOI | GRGCYC | 2 cut(s) | 960, 1321 |
| Fsp4HI | GCNGC | 8 cut(s) | 112, 115, 237, 240, 321, 534, 550, 651 |
| FspBI | CTAG | 8 cut(s) | 233, 284, 443, 578, 597, 809, 1125, 1406 |
| GlaI | GCGC | 2 cut(s) | 1066, 1082 |
| GluI | GCNGC | 8 cut(s) | 112, 115, 237, 240, 321, 534, 550, 651 |
| GsuI | CTGGAG | 1 cut(s) | 698 |
| HaeII | RGCGCY | 1 cut(s) | 1084 |
| HaeIII | GGCC | 4 cut(s) | 50, 60, 192, 566 |
| HapII | CCGG | 1 cut(s) | 57 |
| HgaI | GACGC | 1 cut(s) | 1205 |
| HhaI | GCGC | 2 cut(s) | 1067, 1083 |
| Hin1I | GRCGYC | 2 cut(s) | 1081, 1197 |
| Hin1II | CATG | 8 cut(s) | 106, 157, 482, 521, 526, 540, 956, 992 |
| Hin6I | GCGC | 2 cut(s) | 1065, 1081 |
| HinP1I | GCGC | 2 cut(s) | 1065, 1081 |
| HinfI | GANTC | 9 cut(s) | 573, 586, 691, 707, 791, 868, 918, 1049, 1253 |
| HpaII | CCGG | 1 cut(s) | 57 |
| HphI | GGTGA | 6 cut(s) | 14, 46, 286, 464, 1205, 1327 |
| Hpy188I | TCNGA | 3 cut(s) | 97, 1258, 1294 |
| Hpy99I | CGWCG | 1 cut(s) | 93 |
| HpyAV | CCTTC | 5 cut(s) | 298, 365, 741, 889, 1145 |
| HpyCH4III | ACNGT | 2 cut(s) | 364, 616 |
| HpyCH4IV | ACGT | 2 cut(s) | 783, 1120 |
| HpyCH4V | TGCA | 6 cut(s) | 167, 267, 401, 536, 893, 932 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 108, 659, 1087, 1367 |
| HpyF3I | CTNAG | 8 cut(s) | 29, 96, 206, 655, 906, 1103, 1209, 1257 |
| HpySE526I | ACGT | 2 cut(s) | 783, 1120 |
| Hsp92I | GRCGYC | 2 cut(s) | 1081, 1197 |
| Hsp92II | CATG | 8 cut(s) | 106, 157, 482, 521, 526, 540, 956, 992 |
| HspAI | GCGC | 2 cut(s) | 1065, 1081 |
| KasI | GGCGCC | 1 cut(s) | 1080 |
| KpnI | GGTACC | 1 cut(s) | 37 |
| Ksp22I | TGATCA | 1 cut(s) | 1294 |
| Kzo9I | GATC | 8 cut(s) | 92, 253, 330, 939, 1022, 1294, 1390, 1402 |
| LmnI | GCTCC | 2 cut(s) | 530, 717 |
| Lsp1109I | GCAGC | 6 cut(s) | 123, 223, 226, 307, 520, 662 |
| LweI | GCATC | 3 cut(s) | 159, 565, 1216 |
| MaeI | CTAG | 8 cut(s) | 233, 284, 443, 578, 597, 809, 1125, 1406 |
| MaeII | ACGT | 2 cut(s) | 783, 1120 |
| MaeIII | GTNAC | 5 cut(s) | 452, 788, 925, 1193, 1333 |
| MalI | GATC | 8 cut(s) | 94, 255, 332, 941, 1024, 1296, 1392, 1404 |
| MboI | GATC | 8 cut(s) | 92, 253, 330, 939, 1022, 1294, 1390, 1402 |
| MfeI | CAATTG | 1 cut(s) | 162 |
| MflI | RGATCY | 2 cut(s) | 330, 1022 |
| MhlI | GDGCHC | 3 cut(s) | 960, 1306, 1321 |
| MluCI | AATT | 5 cut(s) | 162, 278, 427, 1015, 1054 |
| MluI | ACGCGT | 1 cut(s) | 469 |
| Mly113I | GGCGCC | 1 cut(s) | 1081 |
| MlyI | GAGTC | 4 cut(s) | 685, 785, 862, 1262 |
| MseI | TTAA | 4 cut(s) | 347, 474, 497, 1233 |
| MslI | CAYNNNNRTG | 7 cut(s) | 128, 272, 686, 702, 1001, 1191, 1221 |
| MspI | CCGG | 1 cut(s) | 57 |
| MspR9I | CCNGG | 2 cut(s) | 602, 1182 |
| MunI | CAATTG | 1 cut(s) | 162 |
| MvaI | CCWGG | 2 cut(s) | 602, 1182 |
| MvnI | CGCG | 2 cut(s) | 471, 1065 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 108, 659, 1087, 1367 |
| NarI | GGCGCC | 1 cut(s) | 1081 |
| NdeI | CATATG | 1 cut(s) | 699 |
| NdeII | GATC | 8 cut(s) | 92, 253, 330, 939, 1022, 1294, 1390, 1402 |
| NlaIII | CATG | 8 cut(s) | 106, 157, 482, 521, 526, 540, 956, 992 |
| NlaIV | GGNNCC | 3 cut(s) | 35, 465, 1082 |
| NmuCI | GTSAC | 4 cut(s) | 452, 788, 1193, 1333 |
| NspI | RCATGY | 4 cut(s) | 106, 482, 526, 540 |
| OliI | CACNNNNGTG | 1 cut(s) | 128 |
| PaeI | GCATGC | 1 cut(s) | 526 |
| PaeR7I | CTCGAG | 1 cut(s) | 590 |
| PagI | TCATGA | 1 cut(s) | 952 |
| PfeI | GAWTC | 5 cut(s) | 573, 586, 707, 918, 1049 |
| PkrI | GCNGC | 8 cut(s) | 113, 116, 238, 241, 322, 535, 551, 652 |
| PleI | GAGTC | 4 cut(s) | 685, 785, 862, 1261 |
| PluTI | GGCGCC | 1 cut(s) | 1084 |
| PpsI | GAGTC | 4 cut(s) | 685, 785, 862, 1261 |
| PpuMI | RGGWCCY | 1 cut(s) | 463 |
| Psp124BI | GAGCTC | 2 cut(s) | 960, 1321 |
| Psp5II | RGGWCCY | 1 cut(s) | 463 |
| Psp6I | CCWGG | 2 cut(s) | 600, 1180 |
| PspEI | GGTNACC | 1 cut(s) | 452 |
| PspGI | CCWGG | 2 cut(s) | 600, 1180 |
| PspN4I | GGNNCC | 3 cut(s) | 35, 465, 1082 |
| PspPI | GGNCC | 1 cut(s) | 463 |
| PspPPI | RGGWCCY | 1 cut(s) | 463 |
| PstI | CTGCAG | 1 cut(s) | 934 |
| PsuI | RGATCY | 2 cut(s) | 330, 1022 |
| RsaI | GTAC | 2 cut(s) | 35, 188 |
| RsaNI | GTAC | 2 cut(s) | 34, 187 |
| RseI | CAYNNNNRTG | 7 cut(s) | 128, 272, 686, 702, 1001, 1191, 1221 |
| SacI | GAGCTC | 2 cut(s) | 960, 1321 |
| SaqAI | TTAA | 4 cut(s) | 347, 474, 497, 1233 |
| SatI | GCNGC | 8 cut(s) | 112, 115, 237, 240, 321, 534, 550, 651 |
| Sau3AI | GATC | 8 cut(s) | 92, 253, 330, 939, 1022, 1294, 1390, 1402 |
| Sau96I | GGNCC | 1 cut(s) | 463 |
| SchI | GAGTC | 4 cut(s) | 685, 785, 862, 1262 |
| ScrFI | CCNGG | 2 cut(s) | 602, 1182 |
| SduI | GDGCHC | 3 cut(s) | 960, 1306, 1321 |
| SfaNI | GCATC | 3 cut(s) | 159, 565, 1216 |
| SfcI | CTRYAG | 2 cut(s) | 339, 930 |
| SfoI | GGCGCC | 1 cut(s) | 1082 |
| Sfr274I | CTCGAG | 1 cut(s) | 590 |
| SinI | GGWCC | 1 cut(s) | 463 |
| SlaI | CTCGAG | 1 cut(s) | 590 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 128, 272, 686, 702, 1001, 1191, 1221 |
| SmlI | CTYRAG | 5 cut(s) | 44, 458, 560, 590, 627 |
| SmoI | CTYRAG | 5 cut(s) | 44, 458, 560, 590, 627 |
| SphI | GCATGC | 1 cut(s) | 526 |
| Sse9I | AATT | 5 cut(s) | 162, 278, 427, 1015, 1054 |
| SsiI | CCGC | 5 cut(s) | 72, 115, 126, 148, 550 |
| SspDI | GGCGCC | 1 cut(s) | 1080 |
| SspI | AATATT | 1 cut(s) | 976 |
| SspMI | CTAG | 8 cut(s) | 233, 284, 443, 578, 597, 809, 1125, 1406 |
| SstI | GAGCTC | 2 cut(s) | 960, 1321 |
| StyD4I | CCNGG | 2 cut(s) | 600, 1180 |
| TaaI | ACNGT | 2 cut(s) | 364, 616 |
| TaiI | ACGT | 2 cut(s) | 786, 1123 |
| TaqI | TCGA | 8 cut(s) | 91, 591, 765, 916, 921, 1019, 1247, 1279 |
| TasI | AATT | 5 cut(s) | 162, 278, 427, 1015, 1054 |
| TauI | GCSGC | 2 cut(s) | 117, 552 |
| TfiI | GAWTC | 5 cut(s) | 573, 586, 707, 918, 1049 |
| Tru1I | TTAA | 4 cut(s) | 347, 474, 497, 1233 |
| Tru9I | TTAA | 4 cut(s) | 347, 474, 497, 1233 |
| TscAI | CASTG | 1 cut(s) | 214 |
| TseFI | GTSAC | 4 cut(s) | 452, 788, 1193, 1333 |
| TseI | GCWGC | 6 cut(s) | 111, 236, 239, 320, 533, 650 |
| Tsp45I | GTSAC | 4 cut(s) | 452, 788, 1193, 1333 |
| TspDTI | ATGAA | 6 cut(s) | 367, 528, 743, 747, 941, 986 |
| TspGWI | ACGGA | 3 cut(s) | 77, 776, 1015 |
| TspRI | CASTG | 1 cut(s) | 214 |
| VpaK11BI | GGWCC | 1 cut(s) | 463 |
| XapI | RAATTY | 2 cut(s) | 278, 427 |
| XbaI | TCTAGA | 1 cut(s) | 1405 |
| XceI | RCATGY | 4 cut(s) | 106, 482, 526, 540 |
| XhoI | CTCGAG | 1 cut(s) | 590 |
| XspI | CTAG | 8 cut(s) | 233, 284, 443, 578, 597, 809, 1125, 1406 |