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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 510 |
| AccB1I | GGYRCC | 4 cut(s) | 465, 623, 884, 965 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 676 |
| AccII | CGCG | 1 cut(s) | 450 |
| AciI | CCGC | 3 cut(s) | 79, 867, 870 |
| AclWI | GGATC | 2 cut(s) | 332, 770 |
| AcsI | RAATTY | 1 cut(s) | 311 |
| AcyI | GRCGYC | 4 cut(s) | 466, 624, 936, 966 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 676, 726, 910 |
| AgsI | TTSAA | 4 cut(s) | 149, 259, 816, 1002 |
| AjiI | CACGTC | 1 cut(s) | 136 |
| AjnI | CCWGG | 2 cut(s) | 105, 850 |
| AluBI | AGCT | 3 cut(s) | 343, 353, 745 |
| AluI | AGCT | 3 cut(s) | 343, 353, 745 |
| Alw21I | GWGCWC | 2 cut(s) | 345, 747 |
| Alw26I | GTCTC | 1 cut(s) | 176 |
| AlwI | GGATC | 2 cut(s) | 332, 770 |
| Ama87I | CYCGRG | 1 cut(s) | 119 |
| AoxI | GGCC | 2 cut(s) | 93, 1023 |
| ApoI | RAATTY | 1 cut(s) | 311 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 288 |
| AspA2I | CCTAGG | 1 cut(s) | 970 |
| AspLEI | GCGC | 5 cut(s) | 452, 468, 626, 667, 968 |
| AspS9I | GGNCC | 2 cut(s) | 512, 1024 |
| AsuHPI | GGTGA | 3 cut(s) | 971, 979, 986 |
| AsuNHI | GCTAGC | 1 cut(s) | 914 |
| AvaI | CYCGRG | 1 cut(s) | 119 |
| AvaII | GGWCC | 1 cut(s) | 512 |
| AvrII | CCTAGG | 1 cut(s) | 970 |
| AxyI | CCTNAGG | 1 cut(s) | 488 |
| BanI | GGYRCC | 4 cut(s) | 465, 623, 884, 965 |
| BanII | GRGCYC | 2 cut(s) | 345, 747 |
| BauI | CACGAG | 1 cut(s) | 746 |
| Bbv12I | GWGCWC | 2 cut(s) | 345, 747 |
| BccI | CCATC | 6 cut(s) | 225, 651, 787, 938, 956, 960 |
| BciT130I | CCWGG | 2 cut(s) | 107, 852 |
| BciVI | GTATCC | 2 cut(s) | 487, 727 |
| BcoDI | GTCTC | 1 cut(s) | 176 |
| BfaI | CTAG | 4 cut(s) | 126, 765, 915, 971 |
| BfoI | RGCGCY | 4 cut(s) | 469, 627, 668, 969 |
| BfuI | GTATCC | 2 cut(s) | 487, 727 |
| BglII | AGATCT | 1 cut(s) | 407 |
| BisI | GCNGC | 1 cut(s) | 870 |
| BlnI | CCTAGG | 1 cut(s) | 970 |
| BlsI | GCNGC | 1 cut(s) | 871 |
| Bme1390I | CCNGG | 2 cut(s) | 107, 852 |
| Bme18I | GGWCC | 1 cut(s) | 512 |
| BmeT110I | CYCGRG | 1 cut(s) | 119 |
| BmgBI | CACGTC | 1 cut(s) | 136 |
| BmgT120I | GGNCC | 2 cut(s) | 512, 1024 |
| BmiI | GGNNCC | 4 cut(s) | 467, 625, 886, 967 |
| BmrFI | CCNGG | 2 cut(s) | 107, 852 |
| BmrI | ACTGGG | 1 cut(s) | 54 |
| BmsI | GCATC | 4 cut(s) | 94, 643, 957, 967 |
| BmtI | GCTAGC | 1 cut(s) | 918 |
| BmuI | ACTGGG | 1 cut(s) | 54 |
| BpuEI | CTTGAG | 2 cut(s) | 74, 162 |
| BsaHI | GRCGYC | 4 cut(s) | 466, 624, 936, 966 |
| BsaI | GGTCTC | 1 cut(s) | 176 |
| BsaJI | CCNNGG | 3 cut(s) | 908, 939, 970 |
| BsaWI | WCCGGW | 1 cut(s) | 719 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 676, 726, 910 |
| Bse1I | ACTGG | 1 cut(s) | 49 |
| Bse21I | CCTNAGG | 1 cut(s) | 488 |
| BseBI | CCWGG | 2 cut(s) | 107, 852 |
| BseDI | CCNNGG | 3 cut(s) | 908, 939, 970 |
| BseGI | GGATG | 4 cut(s) | 381, 760, 948, 949 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 676, 726, 910 |
| BseMII | CTCAG | 1 cut(s) | 675 |
| BseNI | ACTGG | 1 cut(s) | 49 |
| BseRI | GAGGAG | 1 cut(s) | 595 |
| Bsh1236I | CGCG | 1 cut(s) | 450 |
| BshFI | GGCC | 2 cut(s) | 95, 1025 |
| BshNI | GGYRCC | 4 cut(s) | 465, 623, 884, 965 |
| BsiHKAI | GWGCWC | 2 cut(s) | 345, 747 |
| BsiHKCI | CYCGRG | 1 cut(s) | 119 |
| BsiSI | CCGG | 1 cut(s) | 720 |
| BslFI | GGGAC | 1 cut(s) | 908 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 676, 726, 910 |
| BsmAI | GTCTC | 1 cut(s) | 176 |
| BsmFI | GGGAC | 1 cut(s) | 908 |
| BsnI | GGCC | 2 cut(s) | 95, 1025 |
| Bso31I | GGTCTC | 1 cut(s) | 176 |
| BsoBI | CYCGRG | 1 cut(s) | 119 |
| Bsp1286I | GDGCHC | 2 cut(s) | 345, 747 |
| Bsp143I | GATC | 3 cut(s) | 324, 407, 775 |
| Bsp19I | CCATGG | 1 cut(s) | 939 |
| BspACI | CCGC | 3 cut(s) | 79, 867, 870 |
| BspANI | GGCC | 2 cut(s) | 95, 1025 |
| BspCNI | CTCAG | 1 cut(s) | 676 |
| BspFNI | CGCG | 1 cut(s) | 450 |
| BspHI | TCATGA | 2 cut(s) | 337, 373 |
| BspLI | GGNNCC | 4 cut(s) | 467, 625, 886, 967 |
| BspOI | GCTAGC | 1 cut(s) | 918 |
| BspPI | GGATC | 2 cut(s) | 332, 770 |
| BspT107I | GGYRCC | 4 cut(s) | 465, 623, 884, 965 |
| BspTNI | GGTCTC | 1 cut(s) | 176 |
| BsrI | ACTGG | 1 cut(s) | 49 |
| BssECI | CCNNGG | 3 cut(s) | 908, 939, 970 |
| BssMI | GATC | 3 cut(s) | 324, 407, 775 |
| BssNI | GRCGYC | 4 cut(s) | 466, 624, 936, 966 |
| BssSI | CACGAG | 1 cut(s) | 746 |
| BssT1I | CCWWGG | 3 cut(s) | 908, 939, 970 |
| Bst2BI | CACGAG | 1 cut(s) | 746 |
| Bst2UI | CCWGG | 2 cut(s) | 107, 852 |
| Bst4CI | ACNGT | 3 cut(s) | 145, 922, 1019 |
| Bst6I | CTCTTC | 1 cut(s) | 565 |
| BstACI | GRCGYC | 4 cut(s) | 466, 624, 936, 966 |
| BstC8I | GCNNGC | 2 cut(s) | 83, 916 |
| BstDEI | CTNAG | 6 cut(s) | 456, 488, 636, 684, 857, 1086 |
| BstDSI | CCRYGG | 1 cut(s) | 939 |
| BstEII | GGTNACC | 1 cut(s) | 539 |
| BstF5I | GGATG | 4 cut(s) | 381, 760, 948, 949 |
| BstFNI | CGCG | 1 cut(s) | 450 |
| BstH2I | RGCGCY | 4 cut(s) | 469, 627, 668, 969 |
| BstHHI | GCGC | 5 cut(s) | 452, 468, 626, 667, 968 |
| BstKTI | GATC | 3 cut(s) | 327, 410, 778 |
| BstMAI | GTCTC | 1 cut(s) | 176 |
| BstMBI | GATC | 3 cut(s) | 324, 407, 775 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 662, 875, 1055 |
| BstNI | CCWGG | 2 cut(s) | 107, 852 |
| BstNSI | RCATGY | 1 cut(s) | 428 |
| BstPI | GGTNACC | 1 cut(s) | 539 |
| BstSCI | CCNGG | 2 cut(s) | 105, 850 |
| BstUI | CGCG | 1 cut(s) | 450 |
| BstX2I | RGATCY | 1 cut(s) | 407 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 620 |
| BstYI | RGATCY | 1 cut(s) | 407 |
| Bsu36I | CCTNAGG | 1 cut(s) | 488 |
| BsuI | GTATCC | 2 cut(s) | 487, 727 |
| BsuRI | GGCC | 2 cut(s) | 95, 1025 |
| BtgI | CCRYGG | 1 cut(s) | 939 |
| BtrI | CACGTC | 1 cut(s) | 136 |
| BtsCI | GGATG | 4 cut(s) | 381, 760, 948, 949 |
| BtsIMutI | CAGTG | 1 cut(s) | 363 |
| Cac8I | GCNNGC | 2 cut(s) | 83, 916 |
| CciI | TCATGA | 2 cut(s) | 337, 373 |
| CfoI | GCGC | 5 cut(s) | 452, 468, 626, 667, 968 |
| Cfr13I | GGNCC | 2 cut(s) | 512, 1024 |
| CseI | GACGC | 1 cut(s) | 944 |
| CviAII | CATG | 8 cut(s) | 338, 374, 425, 614, 830, 932, 940, 956 |
| DdeI | CTNAG | 6 cut(s) | 456, 488, 636, 684, 857, 1086 |
| DinI | GGCGCC | 3 cut(s) | 467, 625, 967 |
| DpnI | GATC | 3 cut(s) | 326, 409, 777 |
| DpnII | GATC | 3 cut(s) | 324, 407, 775 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 510 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 510 |
| Eam1104I | CTCTTC | 1 cut(s) | 565 |
| EarI | CTCTTC | 1 cut(s) | 565 |
| EciI | GGCGGA | 1 cut(s) | 68 |
| Ecl136II | GAGCTC | 2 cut(s) | 343, 745 |
| Eco130I | CCWWGG | 3 cut(s) | 908, 939, 970 |
| Eco24I | GRGCYC | 2 cut(s) | 345, 747 |
| Eco31I | GGTCTC | 1 cut(s) | 176 |
| Eco32I | GATATC | 1 cut(s) | 56 |
| Eco47I | GGWCC | 1 cut(s) | 512 |
| Eco53kI | GAGCTC | 2 cut(s) | 343, 745 |
| Eco81I | CCTNAGG | 1 cut(s) | 488 |
| Eco88I | CYCGRG | 1 cut(s) | 119 |
| Eco91I | GGTNACC | 1 cut(s) | 539 |
| EcoICRI | GAGCTC | 2 cut(s) | 343, 745 |
| EcoO65I | GGTNACC | 1 cut(s) | 539 |
| EcoRI | GAATTC | 1 cut(s) | 311 |
| EcoRII | CCWGG | 2 cut(s) | 105, 850 |
| EcoRV | GATATC | 1 cut(s) | 56 |
| EcoT14I | CCWWGG | 3 cut(s) | 908, 939, 970 |
| EcoT38I | GRGCYC | 2 cut(s) | 345, 747 |
| EgeI | GGCGCC | 3 cut(s) | 467, 625, 967 |
| EheI | GGCGCC | 3 cut(s) | 467, 625, 967 |
| ErhI | CCWWGG | 3 cut(s) | 908, 939, 970 |
| FaeI | CATG | 8 cut(s) | 341, 377, 428, 617, 833, 935, 943, 959 |
| FaqI | GGGAC | 1 cut(s) | 908 |
| FatI | CATG | 8 cut(s) | 337, 373, 424, 613, 829, 931, 939, 955 |
| Fnu4HI | GCNGC | 1 cut(s) | 870 |
| FokI | GGATG | 4 cut(s) | 368, 747, 935, 956 |
| FriOI | GRGCYC | 2 cut(s) | 345, 747 |
| Fsp4HI | GCNGC | 1 cut(s) | 870 |
| FspBI | CTAG | 4 cut(s) | 126, 765, 915, 971 |
| GlaI | GCGC | 5 cut(s) | 451, 467, 625, 666, 967 |
| GluI | GCNGC | 1 cut(s) | 870 |
| HaeII | RGCGCY | 4 cut(s) | 469, 627, 668, 969 |
| HaeIII | GGCC | 2 cut(s) | 95, 1025 |
| HapII | CCGG | 1 cut(s) | 720 |
| HgaI | GACGC | 1 cut(s) | 944 |
| HhaI | GCGC | 5 cut(s) | 452, 468, 626, 667, 968 |
| Hin1I | GRCGYC | 4 cut(s) | 466, 624, 936, 966 |
| Hin1II | CATG | 8 cut(s) | 341, 377, 428, 617, 833, 935, 943, 959 |
| Hin6I | GCGC | 5 cut(s) | 450, 466, 624, 665, 966 |
| HinP1I | GCGC | 5 cut(s) | 450, 466, 624, 665, 966 |
| HincII | GTYRAC | 1 cut(s) | 578 |
| HindII | GTYRAC | 1 cut(s) | 578 |
| HinfI | GANTC | 7 cut(s) | 102, 115, 203, 434, 680, 833, 845 |
| HpaII | CCGG | 1 cut(s) | 720 |
| HphI | GGTGA | 3 cut(s) | 971, 979, 986 |
| Hpy166II | GTNNAC | 4 cut(s) | 320, 578, 898, 1071 |
| Hpy188I | TCNGA | 4 cut(s) | 283, 610, 685, 1015 |
| Hpy8I | GTNNAC | 4 cut(s) | 320, 578, 898, 1071 |
| HpyAV | CCTTC | 2 cut(s) | 456, 530 |
| HpyCH4III | ACNGT | 3 cut(s) | 145, 922, 1019 |
| HpyCH4IV | ACGT | 3 cut(s) | 135, 195, 580 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 662, 875, 1055 |
| HpyF3I | CTNAG | 6 cut(s) | 456, 488, 636, 684, 857, 1086 |
| HpySE526I | ACGT | 3 cut(s) | 135, 195, 580 |
| Hsp92I | GRCGYC | 4 cut(s) | 466, 624, 936, 966 |
| Hsp92II | CATG | 8 cut(s) | 341, 377, 428, 617, 833, 935, 943, 959 |
| HspAI | GCGC | 5 cut(s) | 450, 466, 624, 665, 966 |
| KasI | GGCGCC | 3 cut(s) | 465, 623, 965 |
| Kzo9I | GATC | 3 cut(s) | 324, 407, 775 |
| LmnI | GCTCC | 1 cut(s) | 350 |
| LweI | GCATC | 4 cut(s) | 94, 643, 957, 967 |
| MaeI | CTAG | 4 cut(s) | 126, 765, 915, 971 |
| MaeII | ACGT | 3 cut(s) | 135, 195, 580 |
| MaeIII | GTNAC | 4 cut(s) | 5, 361, 539, 862 |
| MalI | GATC | 3 cut(s) | 326, 409, 777 |
| MboI | GATC | 3 cut(s) | 324, 407, 775 |
| MboII | GAAGA | 4 cut(s) | 195, 403, 582, 763 |
| MflI | RGATCY | 1 cut(s) | 407 |
| MhlI | GDGCHC | 2 cut(s) | 345, 747 |
| MluCI | AATT | 4 cut(s) | 17, 311, 400, 439 |
| Mly113I | GGCGCC | 3 cut(s) | 466, 624, 966 |
| MlyI | GAGTC | 1 cut(s) | 689 |
| MnlI | CCTC | 8 cut(s) | 251, 566, 590, 616, 889, 898, 1048, 1069 |
| MroXI | GAANNNNTTC | 1 cut(s) | 288 |
| MseI | TTAA | 1 cut(s) | 305 |
| MslI | CAYNNNNRTG | 5 cut(s) | 386, 618, 648, 957, 960 |
| MspI | CCGG | 1 cut(s) | 720 |
| MspR9I | CCNGG | 2 cut(s) | 107, 852 |
| MvaI | CCWGG | 2 cut(s) | 107, 852 |
| MvnI | CGCG | 1 cut(s) | 450 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 662, 875, 1055 |
| NarI | GGCGCC | 3 cut(s) | 466, 624, 966 |
| NcoI | CCATGG | 1 cut(s) | 939 |
| NdeII | GATC | 3 cut(s) | 324, 407, 775 |
| NheI | GCTAGC | 1 cut(s) | 914 |
| NlaIII | CATG | 8 cut(s) | 341, 377, 428, 617, 833, 935, 943, 959 |
| NlaIV | GGNNCC | 4 cut(s) | 467, 625, 886, 967 |
| NmuCI | GTSAC | 2 cut(s) | 361, 862 |
| NspI | RCATGY | 1 cut(s) | 428 |
| PaeR7I | CTCGAG | 1 cut(s) | 119 |
| PagI | TCATGA | 2 cut(s) | 337, 373 |
| PdmI | GAANNNNTTC | 1 cut(s) | 288 |
| PfeI | GAWTC | 6 cut(s) | 102, 115, 203, 434, 833, 845 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 676 |
| PfoI | TCCNGGA | 2 cut(s) | 105, 850 |
| PkrI | GCNGC | 1 cut(s) | 871 |
| PleI | GAGTC | 1 cut(s) | 688 |
| PluTI | GGCGCC | 3 cut(s) | 469, 627, 969 |
| PpsI | GAGTC | 1 cut(s) | 688 |
| Psp124BI | GAGCTC | 2 cut(s) | 345, 747 |
| Psp6I | CCWGG | 2 cut(s) | 105, 850 |
| PspEI | GGTNACC | 1 cut(s) | 539 |
| PspGI | CCWGG | 2 cut(s) | 105, 850 |
| PspN4I | GGNNCC | 4 cut(s) | 467, 625, 886, 967 |
| PspPI | GGNCC | 2 cut(s) | 512, 1024 |
| PsuI | RGATCY | 1 cut(s) | 407 |
| RseI | CAYNNNNRTG | 5 cut(s) | 386, 618, 648, 957, 960 |
| SacI | GAGCTC | 2 cut(s) | 345, 747 |
| SaqAI | TTAA | 1 cut(s) | 305 |
| SatI | GCNGC | 1 cut(s) | 870 |
| Sau3AI | GATC | 3 cut(s) | 324, 407, 775 |
| Sau96I | GGNCC | 2 cut(s) | 512, 1024 |
| SchI | GAGTC | 1 cut(s) | 689 |
| ScrFI | CCNGG | 2 cut(s) | 107, 852 |
| SduI | GDGCHC | 2 cut(s) | 345, 747 |
| SfaNI | GCATC | 4 cut(s) | 94, 643, 957, 967 |
| SfoI | GGCGCC | 3 cut(s) | 467, 625, 967 |
| Sfr274I | CTCGAG | 1 cut(s) | 119 |
| SinI | GGWCC | 1 cut(s) | 512 |
| SlaI | CTCGAG | 1 cut(s) | 119 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 386, 618, 648, 957, 960 |
| SmlI | CTYRAG | 3 cut(s) | 89, 119, 177 |
| SmoI | CTYRAG | 3 cut(s) | 89, 119, 177 |
| Sse9I | AATT | 4 cut(s) | 17, 311, 400, 439 |
| SsiI | CCGC | 3 cut(s) | 79, 867, 870 |
| SspDI | GGCGCC | 3 cut(s) | 465, 623, 965 |
| SspMI | CTAG | 4 cut(s) | 126, 765, 915, 971 |
| SstI | GAGCTC | 2 cut(s) | 345, 747 |
| StyD4I | CCNGG | 2 cut(s) | 105, 850 |
| StyI | CCWWGG | 3 cut(s) | 908, 939, 970 |
| TaaI | ACNGT | 3 cut(s) | 145, 922, 1019 |
| TaiI | ACGT | 3 cut(s) | 138, 198, 583 |
| TaqI | TCGA | 3 cut(s) | 120, 404, 706 |
| TasI | AATT | 4 cut(s) | 17, 311, 400, 439 |
| TauI | GCSGC | 1 cut(s) | 872 |
| TfiI | GAWTC | 6 cut(s) | 102, 115, 203, 434, 833, 845 |
| Tru1I | TTAA | 1 cut(s) | 305 |
| Tru9I | TTAA | 1 cut(s) | 305 |
| TscAI | CASTG | 1 cut(s) | 370 |
| TseFI | GTSAC | 2 cut(s) | 361, 862 |
| Tsp45I | GTSAC | 2 cut(s) | 361, 862 |
| TspDTI | ATGAA | 4 cut(s) | 21, 326, 371, 846 |
| TspGWI | ACGGA | 2 cut(s) | 188, 337 |
| TspRI | CASTG | 1 cut(s) | 370 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 676 |
| VpaK11BI | GGWCC | 1 cut(s) | 512 |
| XapI | RAATTY | 1 cut(s) | 311 |
| XceI | RCATGY | 1 cut(s) | 428 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 103, 959 |
| XhoI | CTCGAG | 1 cut(s) | 119 |
| XmaJI | CCTAGG | 1 cut(s) | 970 |
| XmnI | GAANNNNTTC | 1 cut(s) | 288 |
| XspI | CTAG | 4 cut(s) | 126, 765, 915, 971 |