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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 636, 755 |
| AccI | GTMKAC | 1 cut(s) | 78 |
| AciI | CCGC | 2 cut(s) | 313, 897 |
| AclWI | GGATC | 2 cut(s) | 503, 573 |
| AcoI | YGGCCR | 1 cut(s) | 742 |
| AcsI | RAATTY | 1 cut(s) | 380 |
| AcyI | GRCGYC | 2 cut(s) | 637, 756 |
| AdeI | CACNNNGTG | 1 cut(s) | 937 |
| AfaI | GTAC | 1 cut(s) | 200 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 858 |
| AgsI | TTSAA | 3 cut(s) | 328, 419, 793 |
| AjiI | CACGTC | 1 cut(s) | 136 |
| AjnI | CCWGG | 2 cut(s) | 105, 129 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 240, 272 |
| AluBI | AGCT | 6 cut(s) | 155, 161, 514, 524, 878, 929 |
| AluI | AGCT | 6 cut(s) | 155, 161, 514, 524, 878, 929 |
| Alw21I | GWGCWC | 1 cut(s) | 880 |
| Alw26I | GTCTC | 2 cut(s) | 448, 804 |
| AlwI | GGATC | 2 cut(s) | 503, 573 |
| Ama87I | CYCGRG | 1 cut(s) | 119 |
| AoxI | GGCC | 1 cut(s) | 742 |
| ApeKI | GCWGC | 1 cut(s) | 179 |
| ApoI | RAATTY | 1 cut(s) | 380 |
| AspLEI | GCGC | 2 cut(s) | 639, 758 |
| AsuHPI | GGTGA | 1 cut(s) | 886 |
| AvaI | CYCGRG | 1 cut(s) | 119 |
| BaeGI | GKGCMC | 1 cut(s) | 865 |
| BalI | TGGCCA | 1 cut(s) | 744 |
| BanI | GGYRCC | 2 cut(s) | 636, 755 |
| BanII | GRGCYC | 1 cut(s) | 880 |
| BauI | CACGAG | 1 cut(s) | 879 |
| Bbv12I | GWGCWC | 1 cut(s) | 880 |
| BbvI | GCAGC | 1 cut(s) | 191 |
| BccI | CCATC | 2 cut(s) | 294, 448 |
| BciT130I | CCWGG | 2 cut(s) | 107, 131 |
| BciVI | GTATCC | 3 cut(s) | 103, 658, 859 |
| BcoDI | GTCTC | 2 cut(s) | 448, 804 |
| BfaI | CTAG | 3 cut(s) | 126, 290, 965 |
| BfmI | CTRYAG | 1 cut(s) | 486 |
| BfoI | RGCGCY | 2 cut(s) | 640, 759 |
| BfuI | GTATCC | 3 cut(s) | 103, 658, 859 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 188 |
| BisI | GCNGC | 1 cut(s) | 180 |
| BlsI | GCNGC | 1 cut(s) | 181 |
| Bme1390I | CCNGG | 2 cut(s) | 107, 131 |
| BmeT110I | CYCGRG | 1 cut(s) | 119 |
| BmgBI | CACGTC | 1 cut(s) | 136 |
| BmiI | GGNNCC | 2 cut(s) | 638, 757 |
| BmrFI | CCNGG | 2 cut(s) | 107, 131 |
| BmsI | GCATC | 1 cut(s) | 94 |
| Bpu10I | CCTNAGC | 1 cut(s) | 359 |
| BpuEI | CTTGAG | 4 cut(s) | 74, 141, 530, 647 |
| BsaHI | GRCGYC | 2 cut(s) | 637, 756 |
| BsaJI | CCNNGG | 1 cut(s) | 582 |
| BsaWI | WCCGGW | 1 cut(s) | 851 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 858 |
| Bse1I | ACTGG | 1 cut(s) | 49 |
| Bse3DI | GCAATG | 1 cut(s) | 739 |
| BseBI | CCWGG | 2 cut(s) | 107, 131 |
| BseDI | CCNNGG | 1 cut(s) | 582 |
| BseGI | GGATG | 1 cut(s) | 552 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 858 |
| BseMI | GCAATG | 1 cut(s) | 739 |
| BseMII | CTCAG | 2 cut(s) | 687, 807 |
| BseNI | ACTGG | 1 cut(s) | 49 |
| BseRI | GAGGAG | 1 cut(s) | 713 |
| BseSI | GKGCMC | 1 cut(s) | 865 |
| BseXI | GCAGC | 1 cut(s) | 191 |
| BshFI | GGCC | 1 cut(s) | 744 |
| BshNI | GGYRCC | 2 cut(s) | 636, 755 |
| BsiHKAI | GWGCWC | 1 cut(s) | 880 |
| BsiHKCI | CYCGRG | 1 cut(s) | 119 |
| BsiSI | CCGG | 1 cut(s) | 852 |
| BslFI | GGGAC | 1 cut(s) | 251 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 858 |
| BsmAI | GTCTC | 2 cut(s) | 448, 804 |
| BsmBI | CGTCTC | 1 cut(s) | 804 |
| BsmFI | GGGAC | 1 cut(s) | 251 |
| BsnI | GGCC | 1 cut(s) | 744 |
| BsoBI | CYCGRG | 1 cut(s) | 119 |
| Bsp1286I | GDGCHC | 2 cut(s) | 865, 880 |
| Bsp143I | GATC | 4 cut(s) | 495, 578, 949, 961 |
| BspACI | CCGC | 2 cut(s) | 313, 897 |
| BspANI | GGCC | 1 cut(s) | 744 |
| BspCNI | CTCAG | 2 cut(s) | 688, 808 |
| BspLI | GGNNCC | 2 cut(s) | 638, 757 |
| BspMAI | CTGCAG | 1 cut(s) | 490 |
| BspPI | GGATC | 2 cut(s) | 503, 573 |
| BspT107I | GGYRCC | 2 cut(s) | 636, 755 |
| BsrDI | GCAATG | 1 cut(s) | 739 |
| BsrI | ACTGG | 1 cut(s) | 49 |
| BssECI | CCNNGG | 1 cut(s) | 582 |
| BssMI | GATC | 4 cut(s) | 495, 578, 949, 961 |
| BssNI | GRCGYC | 2 cut(s) | 637, 756 |
| BssSI | CACGAG | 1 cut(s) | 879 |
| Bst2BI | CACGAG | 1 cut(s) | 879 |
| Bst2UI | CCWGG | 2 cut(s) | 107, 131 |
| Bst4CI | ACNGT | 1 cut(s) | 145 |
| BstACI | GRCGYC | 2 cut(s) | 637, 756 |
| BstC8I | GCNNGC | 1 cut(s) | 153 |
| BstDEI | CTNAG | 7 cut(s) | 184, 349, 359, 462, 659, 696, 816 |
| BstDSI | CCRYGG | 1 cut(s) | 582 |
| BstF5I | GGATG | 1 cut(s) | 552 |
| BstH2I | RGCGCY | 2 cut(s) | 640, 759 |
| BstHHI | GCGC | 2 cut(s) | 639, 758 |
| BstKTI | GATC | 4 cut(s) | 498, 581, 952, 964 |
| BstMAI | GTCTC | 2 cut(s) | 448, 804 |
| BstMBI | GATC | 4 cut(s) | 495, 578, 949, 961 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 167, 176, 188, 643, 794, 905, 926 |
| BstNI | CCWGG | 2 cut(s) | 107, 131 |
| BstSCI | CCNGG | 2 cut(s) | 105, 129 |
| BstSFI | CTRYAG | 1 cut(s) | 486 |
| BstSLI | GKGCMC | 1 cut(s) | 865 |
| BstV1I | GCAGC | 1 cut(s) | 191 |
| BstX2I | RGATCY | 1 cut(s) | 578 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 752 |
| BstYI | RGATCY | 1 cut(s) | 578 |
| BsuI | GTATCC | 3 cut(s) | 103, 658, 859 |
| BsuRI | GGCC | 1 cut(s) | 744 |
| BtgI | CCRYGG | 1 cut(s) | 582 |
| BtgZI | GCGATG | 1 cut(s) | 422 |
| BtrI | CACGTC | 1 cut(s) | 136 |
| BtsCI | GGATG | 1 cut(s) | 552 |
| Cac8I | GCNNGC | 1 cut(s) | 153 |
| CfoI | GCGC | 2 cut(s) | 639, 758 |
| CseI | GACGC | 2 cut(s) | 786, 794 |
| Csp6I | GTAC | 1 cut(s) | 199 |
| CviAII | CATG | 1 cut(s) | 545 |
| CviQI | GTAC | 1 cut(s) | 199 |
| DdeI | CTNAG | 7 cut(s) | 184, 349, 359, 462, 659, 696, 816 |
| DinI | GGCGCC | 2 cut(s) | 638, 757 |
| DpnI | GATC | 4 cut(s) | 497, 580, 951, 963 |
| DpnII | GATC | 4 cut(s) | 495, 578, 949, 961 |
| DraIII | CACNNNGTG | 1 cut(s) | 937 |
| EaeI | YGGCCR | 1 cut(s) | 742 |
| Ecl136II | GAGCTC | 1 cut(s) | 878 |
| Eco24I | GRGCYC | 1 cut(s) | 880 |
| Eco32I | GATATC | 2 cut(s) | 56, 397 |
| Eco53kI | GAGCTC | 1 cut(s) | 878 |
| Eco88I | CYCGRG | 1 cut(s) | 119 |
| EcoICRI | GAGCTC | 1 cut(s) | 878 |
| EcoRII | CCWGG | 2 cut(s) | 105, 129 |
| EcoRV | GATATC | 2 cut(s) | 56, 397 |
| EcoT38I | GRGCYC | 1 cut(s) | 880 |
| EgeI | GGCGCC | 2 cut(s) | 638, 757 |
| EheI | GGCGCC | 2 cut(s) | 638, 757 |
| Esp3I | CGTCTC | 1 cut(s) | 804 |
| FaeI | CATG | 1 cut(s) | 548 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 772, 804 |
| FaqI | GGGAC | 1 cut(s) | 251 |
| FatI | CATG | 1 cut(s) | 544 |
| FauNDI | CATATG | 1 cut(s) | 403 |
| FblI | GTMKAC | 1 cut(s) | 78 |
| Fnu4HI | GCNGC | 1 cut(s) | 180 |
| FokI | GGATG | 1 cut(s) | 539 |
| FriOI | GRGCYC | 1 cut(s) | 880 |
| Fsp4HI | GCNGC | 1 cut(s) | 180 |
| FspBI | CTAG | 3 cut(s) | 126, 290, 965 |
| GlaI | GCGC | 2 cut(s) | 638, 757 |
| GluI | GCNGC | 1 cut(s) | 180 |
| HaeII | RGCGCY | 2 cut(s) | 640, 759 |
| HaeIII | GGCC | 1 cut(s) | 744 |
| HapII | CCGG | 1 cut(s) | 852 |
| HgaI | GACGC | 2 cut(s) | 786, 794 |
| HhaI | GCGC | 2 cut(s) | 639, 758 |
| Hin1I | GRCGYC | 2 cut(s) | 637, 756 |
| Hin1II | CATG | 1 cut(s) | 548 |
| Hin6I | GCGC | 2 cut(s) | 637, 756 |
| HinP1I | GCGC | 2 cut(s) | 637, 756 |
| HincII | GTYRAC | 1 cut(s) | 706 |
| HindII | GTYRAC | 1 cut(s) | 706 |
| HindIII | AAGCTT | 1 cut(s) | 159 |
| HpaII | CCGG | 1 cut(s) | 852 |
| HphI | GGTGA | 1 cut(s) | 886 |
| Hpy166II | GTNNAC | 2 cut(s) | 79, 706 |
| Hpy188I | TCNGA | 1 cut(s) | 817 |
| Hpy8I | GTNNAC | 2 cut(s) | 79, 706 |
| HpyCH4III | ACNGT | 1 cut(s) | 145 |
| HpyCH4IV | ACGT | 3 cut(s) | 135, 264, 708 |
| HpyCH4V | TGCA | 1 cut(s) | 488 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 167, 176, 188, 643, 794, 905, 926 |
| HpyF3I | CTNAG | 7 cut(s) | 184, 349, 359, 462, 659, 696, 816 |
| HpySE526I | ACGT | 3 cut(s) | 135, 264, 708 |
| Hsp92I | GRCGYC | 2 cut(s) | 637, 756 |
| Hsp92II | CATG | 1 cut(s) | 548 |
| HspAI | GCGC | 2 cut(s) | 637, 756 |
| KasI | GGCGCC | 2 cut(s) | 636, 755 |
| Kzo9I | GATC | 4 cut(s) | 495, 578, 949, 961 |
| LmnI | GCTCC | 2 cut(s) | 34, 521 |
| Lsp1109I | GCAGC | 1 cut(s) | 191 |
| LweI | GCATC | 1 cut(s) | 94 |
| MaeI | CTAG | 3 cut(s) | 126, 290, 965 |
| MaeII | ACGT | 3 cut(s) | 135, 264, 708 |
| MaeIII | GTNAC | 5 cut(s) | 5, 269, 481, 782, 892 |
| MalI | GATC | 4 cut(s) | 497, 580, 951, 963 |
| MboI | GATC | 4 cut(s) | 495, 578, 949, 961 |
| MboII | GAAGA | 4 cut(s) | 260, 896, 959, 968 |
| MfeI | CAATTG | 1 cut(s) | 96 |
| MflI | RGATCY | 1 cut(s) | 578 |
| MhlI | GDGCHC | 2 cut(s) | 865, 880 |
| MlsI | TGGCCA | 1 cut(s) | 744 |
| MluCI | AATT | 6 cut(s) | 17, 96, 380, 571, 610, 888 |
| MluNI | TGGCCA | 1 cut(s) | 744 |
| Mly113I | GGCGCC | 2 cut(s) | 637, 756 |
| MlyI | GAGTC | 5 cut(s) | 233, 266, 418, 781, 821 |
| MnlI | CCTC | 8 cut(s) | 181, 320, 622, 626, 691, 694, 722, 748 |
| Mox20I | TGGCCA | 1 cut(s) | 744 |
| MscI | TGGCCA | 1 cut(s) | 744 |
| MseI | TTAA | 3 cut(s) | 366, 374, 779 |
| MslI | CAYNNNNRTG | 3 cut(s) | 557, 750, 780 |
| Msp20I | TGGCCA | 1 cut(s) | 744 |
| MspI | CCGG | 1 cut(s) | 852 |
| MspR9I | CCNGG | 2 cut(s) | 107, 131 |
| MunI | CAATTG | 1 cut(s) | 96 |
| MvaI | CCWGG | 2 cut(s) | 107, 131 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 167, 176, 188, 643, 794, 905, 926 |
| NarI | GGCGCC | 2 cut(s) | 637, 756 |
| NdeI | CATATG | 1 cut(s) | 403 |
| NdeII | GATC | 4 cut(s) | 495, 578, 949, 961 |
| NlaIII | CATG | 1 cut(s) | 548 |
| NlaIV | GGNNCC | 2 cut(s) | 638, 757 |
| NmuCI | GTSAC | 3 cut(s) | 269, 782, 892 |
| PaeR7I | CTCGAG | 1 cut(s) | 119 |
| PfeI | GAWTC | 5 cut(s) | 102, 115, 280, 474, 605 |
| PfoI | TCCNGGA | 1 cut(s) | 105 |
| PkrI | GCNGC | 1 cut(s) | 181 |
| PleI | GAGTC | 5 cut(s) | 233, 266, 418, 780, 820 |
| PluTI | GGCGCC | 2 cut(s) | 640, 759 |
| PpsI | GAGTC | 5 cut(s) | 233, 266, 418, 780, 820 |
| Psp124BI | GAGCTC | 1 cut(s) | 880 |
| Psp6I | CCWGG | 2 cut(s) | 105, 129 |
| PspGI | CCWGG | 2 cut(s) | 105, 129 |
| PspN4I | GGNNCC | 2 cut(s) | 638, 757 |
| PstI | CTGCAG | 1 cut(s) | 490 |
| PsuI | RGATCY | 1 cut(s) | 578 |
| RsaI | GTAC | 1 cut(s) | 200 |
| RsaNI | GTAC | 1 cut(s) | 199 |
| RseI | CAYNNNNRTG | 3 cut(s) | 557, 750, 780 |
| SacI | GAGCTC | 1 cut(s) | 880 |
| SaqAI | TTAA | 3 cut(s) | 366, 374, 779 |
| SatI | GCNGC | 1 cut(s) | 180 |
| Sau3AI | GATC | 4 cut(s) | 495, 578, 949, 961 |
| SchI | GAGTC | 5 cut(s) | 233, 266, 418, 781, 821 |
| ScrFI | CCNGG | 2 cut(s) | 107, 131 |
| SduI | GDGCHC | 2 cut(s) | 865, 880 |
| SfaNI | GCATC | 1 cut(s) | 94 |
| SfcI | CTRYAG | 1 cut(s) | 486 |
| SfoI | GGCGCC | 2 cut(s) | 638, 757 |
| Sfr274I | CTCGAG | 1 cut(s) | 119 |
| SlaI | CTCGAG | 1 cut(s) | 119 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 557, 750, 780 |
| SmlI | CTYRAG | 5 cut(s) | 89, 119, 156, 509, 626 |
| SmoI | CTYRAG | 5 cut(s) | 89, 119, 156, 509, 626 |
| Sse9I | AATT | 6 cut(s) | 17, 96, 380, 571, 610, 888 |
| SsiI | CCGC | 2 cut(s) | 313, 897 |
| SspDI | GGCGCC | 2 cut(s) | 636, 755 |
| SspMI | CTAG | 3 cut(s) | 126, 290, 965 |
| SstI | GAGCTC | 1 cut(s) | 880 |
| StyD4I | CCNGG | 2 cut(s) | 105, 129 |
| TaaI | ACNGT | 1 cut(s) | 145 |
| TaiI | ACGT | 3 cut(s) | 138, 267, 711 |
| TaqI | TCGA | 4 cut(s) | 120, 246, 472, 575 |
| TasI | AATT | 6 cut(s) | 17, 96, 380, 571, 610, 888 |
| TfiI | GAWTC | 5 cut(s) | 102, 115, 280, 474, 605 |
| Tru1I | TTAA | 3 cut(s) | 366, 374, 779 |
| Tru9I | TTAA | 3 cut(s) | 366, 374, 779 |
| TseFI | GTSAC | 3 cut(s) | 269, 782, 892 |
| TseI | GCWGC | 1 cut(s) | 179 |
| Tsp45I | GTSAC | 3 cut(s) | 269, 782, 892 |
| TspDTI | ATGAA | 3 cut(s) | 224, 228, 542 |
| TspGWI | ACGGA | 3 cut(s) | 257, 508, 571 |
| XapI | RAATTY | 1 cut(s) | 380 |
| XbaI | TCTAGA | 1 cut(s) | 964 |
| XhoI | CTCGAG | 1 cut(s) | 119 |
| XmiI | GTMKAC | 1 cut(s) | 78 |
| XspI | CTAG | 3 cut(s) | 126, 290, 965 |