gag-polypeptide of LTR copia-type
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1365 |
| Acc36I | ACCTGC | 1 cut(s) | 860 |
| AccB1I | GGYRCC | 4 cut(s) | 1320, 1478, 1553, 1634 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 510 |
| AccII | CGCG | 2 cut(s) | 858, 1305 |
| AccIII | TCCGGA | 2 cut(s) | 587, 949 |
| AclWI | GGATC | 2 cut(s) | 66, 466 |
| AcoI | YGGCCR | 2 cut(s) | 532, 661 |
| AcsI | RAATTY | 3 cut(s) | 608, 993, 1702 |
| AcyI | GRCGYC | 5 cut(s) | 188, 965, 1479, 1605, 1635 |
| AdeI | CACNNNGTG | 1 cut(s) | 84 |
| AfaI | GTAC | 3 cut(s) | 113, 162, 1265 |
| AfeI | AGCGCT | 1 cut(s) | 342 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 254, 510, 587, 924, 1579 |
| AflIII | ACRYGT | 1 cut(s) | 894 |
| AgeI | ACCGGT | 1 cut(s) | 572 |
| AgsI | TTSAA | 7 cut(s) | 137, 175, 418, 463, 1014, 1516, 1670 |
| AjiI | CACGTC | 3 cut(s) | 872, 897, 1153 |
| AjnI | CCWGG | 2 cut(s) | 127, 1146 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 167, 199 |
| Alw21I | GWGCWC | 1 cut(s) | 470 |
| Alw26I | GTCTC | 2 cut(s) | 679, 947 |
| AlwI | GGATC | 2 cut(s) | 66, 466 |
| Ama87I | CYCGRG | 2 cut(s) | 44, 1136 |
| Aor13HI | TCCGGA | 2 cut(s) | 587, 949 |
| Aor51HI | AGCGCT | 1 cut(s) | 342 |
| AoxI | GGCC | 5 cut(s) | 532, 661, 802, 1110, 1691 |
| ApeKI | GCWGC | 6 cut(s) | 365, 755, 778, 813, 1196, 1649 |
| ApoI | RAATTY | 3 cut(s) | 608, 993, 1702 |
| AscI | GGCGCGCC | 1 cut(s) | 1303 |
| AsiGI | ACCGGT | 1 cut(s) | 572 |
| AspA2I | CCTAGG | 3 cut(s) | 475, 1577, 1639 |
| AspLEI | GCGC | 8 cut(s) | 343, 860, 1305, 1307, 1481, 1522, 1589, 1637 |
| AspS9I | GGNCC | 4 cut(s) | 803, 884, 1367, 1692 |
| AsuHPI | GGTGA | 4 cut(s) | 570, 1640, 1648, 1655 |
| AsuNHI | GCTAGC | 1 cut(s) | 1583 |
| AvaI | CYCGRG | 2 cut(s) | 44, 1136 |
| AvaII | GGWCC | 2 cut(s) | 884, 1367 |
| AvrII | CCTAGG | 3 cut(s) | 475, 1577, 1639 |
| AxyI | CCTNAGG | 1 cut(s) | 1343 |
| BaeGI | GKGCMC | 1 cut(s) | 317 |
| BalI | TGGCCA | 2 cut(s) | 534, 663 |
| BanI | GGYRCC | 4 cut(s) | 1320, 1478, 1553, 1634 |
| BanII | GRGCYC | 2 cut(s) | 470, 832 |
| BbsI | GAAGAC | 1 cut(s) | 1290 |
| Bbv12I | GWGCWC | 1 cut(s) | 470 |
| BbvCI | CCTCAGC | 1 cut(s) | 818 |
| BbvI | GCAGC | 6 cut(s) | 377, 767, 790, 825, 1208, 1636 |
| BccI | CCATC | 9 cut(s) | 589, 869, 1109, 1232, 1506, 1544, 1607, 1625, 1629 |
| BciT130I | CCWGG | 2 cut(s) | 129, 1148 |
| BciVI | GTATCC | 1 cut(s) | 1342 |
| BcoDI | GTCTC | 2 cut(s) | 679, 947 |
| BfaI | CTAG | 9 cut(s) | 35, 81, 92, 476, 1124, 1578, 1584, 1640, 1734 |
| BfmI | CTRYAG | 1 cut(s) | 708 |
| BfoI | RGCGCY | 4 cut(s) | 344, 1482, 1523, 1638 |
| BfuAI | ACCTGC | 1 cut(s) | 860 |
| BfuI | GTATCC | 1 cut(s) | 1342 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1205 |
| BglII | AGATCT | 1 cut(s) | 422 |
| BlnI | CCTAGG | 3 cut(s) | 475, 1577, 1639 |
| BmcAI | AGTACT | 1 cut(s) | 113 |
| Bme1390I | CCNGG | 2 cut(s) | 129, 1148 |
| Bme18I | GGWCC | 2 cut(s) | 884, 1367 |
| BmeT110I | CYCGRG | 2 cut(s) | 44, 1136 |
| BmgBI | CACGTC | 3 cut(s) | 872, 897, 1153 |
| BmgT120I | GGNCC | 4 cut(s) | 803, 884, 1367, 1692 |
| BmiI | GGNNCC | 8 cut(s) | 648, 829, 885, 886, 1322, 1480, 1555, 1636 |
| BmrFI | CCNGG | 2 cut(s) | 129, 1148 |
| BmsI | GCATC | 4 cut(s) | 886, 1111, 1626, 1636 |
| BmtI | GCTAGC | 1 cut(s) | 1587 |
| BpiI | GAAGAC | 1 cut(s) | 1290 |
| BpmI | CTGGAG | 2 cut(s) | 285, 1244 |
| Bpu10I | CCTNAGC | 3 cut(s) | 818, 823, 1688 |
| BpuEI | CTTGAG | 3 cut(s) | 164, 1091, 1158 |
| BsaHI | GRCGYC | 5 cut(s) | 188, 965, 1479, 1605, 1635 |
| BsaJI | CCNNGG | 6 cut(s) | 248, 350, 475, 1577, 1608, 1639 |
| BsaWI | WCCGGW | 6 cut(s) | 12, 537, 572, 587, 649, 949 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 254, 510, 587, 924, 1579 |
| Bse118I | RCCGGY | 3 cut(s) | 489, 572, 690 |
| Bse1I | ACTGG | 6 cut(s) | 515, 535, 671, 722, 1066, 1261 |
| Bse21I | CCTNAGG | 1 cut(s) | 1343 |
| BseAI | TCCGGA | 2 cut(s) | 587, 949 |
| BseBI | CCWGG | 2 cut(s) | 129, 1148 |
| BseDI | CCNNGG | 6 cut(s) | 248, 350, 475, 1577, 1608, 1639 |
| BseGI | GGATG | 6 cut(s) | 592, 1023, 1227, 1255, 1617, 1618 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 254, 510, 587, 924, 1579 |
| BseMII | CTCAG | 4 cut(s) | 417, 832, 837, 1702 |
| BseNI | ACTGG | 6 cut(s) | 515, 535, 671, 722, 1066, 1261 |
| BsePI | GCGCGC | 1 cut(s) | 1303 |
| BseSI | GKGCMC | 1 cut(s) | 317 |
| BseXI | GCAGC | 6 cut(s) | 377, 767, 790, 825, 1208, 1636 |
| Bsh1236I | CGCG | 2 cut(s) | 858, 1305 |
| BshFI | GGCC | 5 cut(s) | 534, 663, 804, 1112, 1693 |
| BshNI | GGYRCC | 4 cut(s) | 1320, 1478, 1553, 1634 |
| BshTI | ACCGGT | 1 cut(s) | 572 |
| BsiHKAI | GWGCWC | 1 cut(s) | 470 |
| BsiHKCI | CYCGRG | 2 cut(s) | 44, 1136 |
| BslFI | GGGAC | 2 cut(s) | 897, 1577 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 254, 510, 587, 924, 1579 |
| BsmAI | GTCTC | 2 cut(s) | 679, 947 |
| BsmFI | GGGAC | 2 cut(s) | 897, 1577 |
| BsnI | GGCC | 5 cut(s) | 534, 663, 804, 1112, 1693 |
| BsoBI | CYCGRG | 2 cut(s) | 44, 1136 |
| Bsp1286I | GDGCHC | 3 cut(s) | 317, 470, 832 |
| Bsp13I | TCCGGA | 2 cut(s) | 587, 949 |
| Bsp143I | GATC | 4 cut(s) | 58, 422, 471, 919 |
| Bsp19I | CCATGG | 1 cut(s) | 1608 |
| BspANI | GGCC | 5 cut(s) | 534, 663, 804, 1112, 1693 |
| BspCNI | CTCAG | 4 cut(s) | 418, 831, 836, 1701 |
| BspEI | TCCGGA | 2 cut(s) | 587, 949 |
| BspFNI | CGCG | 2 cut(s) | 858, 1305 |
| BspLI | GGNNCC | 8 cut(s) | 648, 829, 885, 886, 1322, 1480, 1555, 1636 |
| BspMAI | CTGCAG | 1 cut(s) | 712 |
| BspMI | ACCTGC | 1 cut(s) | 860 |
| BspOI | GCTAGC | 1 cut(s) | 1587 |
| BspPI | GGATC | 2 cut(s) | 66, 466 |
| BspQI | GCTCTTC | 2 cut(s) | 132, 458 |
| BspT107I | GGYRCC | 4 cut(s) | 1320, 1478, 1553, 1634 |
| BsrFI | RCCGGY | 3 cut(s) | 489, 572, 690 |
| BsrI | ACTGG | 6 cut(s) | 515, 535, 671, 722, 1066, 1261 |
| BssAI | RCCGGY | 3 cut(s) | 489, 572, 690 |
| BssECI | CCNNGG | 6 cut(s) | 248, 350, 475, 1577, 1608, 1639 |
| BssHII | GCGCGC | 1 cut(s) | 1303 |
| BssMI | GATC | 4 cut(s) | 58, 422, 471, 919 |
| BssNI | GRCGYC | 5 cut(s) | 188, 965, 1479, 1605, 1635 |
| BssT1I | CCWWGG | 5 cut(s) | 350, 475, 1577, 1608, 1639 |
| Bst2UI | CCWGG | 2 cut(s) | 129, 1148 |
| Bst4CI | ACNGT | 3 cut(s) | 911, 927, 934 |
| Bst6I | CTCTTC | 3 cut(s) | 132, 458, 1420 |
| BstACI | GRCGYC | 5 cut(s) | 188, 965, 1479, 1605, 1635 |
| BstC8I | GCNNGC | 6 cut(s) | 256, 802, 1100, 1170, 1305, 1585 |
| BstDEI | CTNAG | 9 cut(s) | 426, 818, 823, 1201, 1311, 1343, 1491, 1688, 1755 |
| BstDSI | CCRYGG | 2 cut(s) | 248, 1608 |
| BstEII | GGTNACC | 1 cut(s) | 1394 |
| BstF5I | GGATG | 6 cut(s) | 592, 1023, 1227, 1255, 1617, 1618 |
| BstFNI | CGCG | 2 cut(s) | 858, 1305 |
| BstH2I | RGCGCY | 4 cut(s) | 344, 1482, 1523, 1638 |
| BstHHI | GCGC | 8 cut(s) | 343, 860, 1305, 1307, 1481, 1522, 1589, 1637 |
| BstKTI | GATC | 4 cut(s) | 61, 425, 474, 922 |
| BstMAI | GTCTC | 2 cut(s) | 679, 947 |
| BstMBI | GATC | 4 cut(s) | 58, 422, 471, 919 |
| BstNI | CCWGG | 2 cut(s) | 129, 1148 |
| BstPI | GGTNACC | 1 cut(s) | 1394 |
| BstSCI | CCNGG | 2 cut(s) | 127, 1146 |
| BstSFI | CTRYAG | 1 cut(s) | 708 |
| BstSLI | GKGCMC | 1 cut(s) | 317 |
| BstUI | CGCG | 2 cut(s) | 858, 1305 |
| BstV1I | GCAGC | 6 cut(s) | 377, 767, 790, 825, 1208, 1636 |
| BstV2I | GAAGAC | 1 cut(s) | 1290 |
| BstX2I | RGATCY | 2 cut(s) | 58, 422 |
| BstYI | RGATCY | 2 cut(s) | 58, 422 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1343 |
| BsuI | GTATCC | 1 cut(s) | 1342 |
| BsuRI | GGCC | 5 cut(s) | 534, 663, 804, 1112, 1693 |
| BtgI | CCRYGG | 2 cut(s) | 248, 1608 |
| BtrI | CACGTC | 3 cut(s) | 872, 897, 1153 |
| BtsCI | GGATG | 6 cut(s) | 592, 1023, 1227, 1255, 1617, 1618 |
| BtsI | GCAGTG | 1 cut(s) | 837 |
| BtsIMutI | CAGTG | 2 cut(s) | 792, 837 |
| BveI | ACCTGC | 1 cut(s) | 860 |
| Cac8I | GCNNGC | 6 cut(s) | 256, 802, 1100, 1170, 1305, 1585 |
| CfoI | GCGC | 8 cut(s) | 343, 860, 1305, 1307, 1481, 1522, 1589, 1637 |
| Cfr10I | RCCGGY | 3 cut(s) | 489, 572, 690 |
| Cfr13I | GGNCC | 4 cut(s) | 803, 884, 1367, 1692 |
| CseI | GACGC | 6 cut(s) | 177, 806, 954, 1517, 1613, 1693 |
| Csp6I | GTAC | 3 cut(s) | 112, 161, 1264 |
| CspAI | ACCGGT | 1 cut(s) | 572 |
| CviAII | CATG | 6 cut(s) | 844, 865, 1469, 1601, 1609, 1625 |
| CviQI | GTAC | 3 cut(s) | 112, 161, 1264 |
| DdeI | CTNAG | 9 cut(s) | 426, 818, 823, 1201, 1311, 1343, 1491, 1688, 1755 |
| DinI | GGCGCC | 2 cut(s) | 1480, 1636 |
| DpnI | GATC | 4 cut(s) | 60, 424, 473, 921 |
| DpnII | GATC | 4 cut(s) | 58, 422, 471, 919 |
| DraIII | CACNNNGTG | 1 cut(s) | 84 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1365 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1365 |
| EaeI | YGGCCR | 2 cut(s) | 532, 661 |
| Eam1104I | CTCTTC | 3 cut(s) | 132, 458, 1420 |
| EarI | CTCTTC | 3 cut(s) | 132, 458, 1420 |
| EciI | GGCGGA | 1 cut(s) | 1085 |
| Ecl136II | GAGCTC | 1 cut(s) | 468 |
| Eco130I | CCWWGG | 5 cut(s) | 350, 475, 1577, 1608, 1639 |
| Eco24I | GRGCYC | 2 cut(s) | 470, 832 |
| Eco47I | GGWCC | 2 cut(s) | 884, 1367 |
| Eco47III | AGCGCT | 1 cut(s) | 342 |
| Eco53kI | GAGCTC | 1 cut(s) | 468 |
| Eco81I | CCTNAGG | 1 cut(s) | 1343 |
| Eco88I | CYCGRG | 2 cut(s) | 44, 1136 |
| Eco91I | GGTNACC | 1 cut(s) | 1394 |
| EcoICRI | GAGCTC | 1 cut(s) | 468 |
| EcoO109I | RGGNCCY | 1 cut(s) | 884 |
| EcoO65I | GGTNACC | 1 cut(s) | 1394 |
| EcoRII | CCWGG | 2 cut(s) | 127, 1146 |
| EcoT14I | CCWWGG | 5 cut(s) | 350, 475, 1577, 1608, 1639 |
| EcoT38I | GRGCYC | 2 cut(s) | 470, 832 |
| EgeI | GGCGCC | 2 cut(s) | 1480, 1636 |
| EheI | GGCGCC | 2 cut(s) | 1480, 1636 |
| ErhI | CCWWGG | 5 cut(s) | 350, 475, 1577, 1608, 1639 |
| FaeI | CATG | 6 cut(s) | 847, 868, 1472, 1604, 1612, 1628 |
| FaqI | GGGAC | 2 cut(s) | 897, 1577 |
| FatI | CATG | 6 cut(s) | 843, 864, 1468, 1600, 1608, 1624 |
| FauI | CCCGC | 2 cut(s) | 247, 563 |
| FauNDI | CATATG | 1 cut(s) | 1245 |
| FokI | GGATG | 6 cut(s) | 579, 1030, 1214, 1262, 1604, 1625 |
| FriOI | GRGCYC | 2 cut(s) | 470, 832 |
| FspBI | CTAG | 9 cut(s) | 35, 81, 92, 476, 1124, 1578, 1584, 1640, 1734 |
| GlaI | GCGC | 8 cut(s) | 342, 859, 1304, 1306, 1480, 1521, 1588, 1636 |
| GsuI | CTGGAG | 2 cut(s) | 285, 1244 |
| HaeII | RGCGCY | 4 cut(s) | 344, 1482, 1523, 1638 |
| HaeIII | GGCC | 5 cut(s) | 534, 663, 804, 1112, 1693 |
| HgaI | GACGC | 6 cut(s) | 177, 806, 954, 1517, 1613, 1693 |
| HhaI | GCGC | 8 cut(s) | 343, 860, 1305, 1307, 1481, 1522, 1589, 1637 |
| Hin1I | GRCGYC | 5 cut(s) | 188, 965, 1479, 1605, 1635 |
| Hin1II | CATG | 6 cut(s) | 847, 868, 1472, 1604, 1612, 1628 |
| Hin6I | GCGC | 8 cut(s) | 341, 858, 1303, 1305, 1479, 1520, 1587, 1635 |
| HinP1I | GCGC | 8 cut(s) | 341, 858, 1303, 1305, 1479, 1520, 1587, 1635 |
| HincII | GTYRAC | 7 cut(s) | 617, 849, 907, 914, 930, 941, 1433 |
| HindII | GTYRAC | 7 cut(s) | 617, 849, 907, 914, 930, 941, 1433 |
| HindIII | AAGCTT | 1 cut(s) | 1176 |
| HphI | GGTGA | 4 cut(s) | 570, 1640, 1648, 1655 |
| Hpy188I | TCNGA | 4 cut(s) | 63, 100, 427, 1683 |
| Hpy99I | CGWCG | 1 cut(s) | 193 |
| HpyAV | CCTTC | 5 cut(s) | 149, 187, 1287, 1311, 1385 |
| HpyCH4III | ACNGT | 3 cut(s) | 911, 927, 934 |
| HpyCH4IV | ACGT | 4 cut(s) | 871, 896, 1152, 1435 |
| HpyCH4V | TGCA | 2 cut(s) | 710, 1652 |
| HpyF3I | CTNAG | 9 cut(s) | 426, 818, 823, 1201, 1311, 1343, 1491, 1688, 1755 |
| HpySE526I | ACGT | 4 cut(s) | 871, 896, 1152, 1435 |
| Hsp92I | GRCGYC | 5 cut(s) | 188, 965, 1479, 1605, 1635 |
| Hsp92II | CATG | 6 cut(s) | 847, 868, 1472, 1604, 1612, 1628 |
| HspAI | GCGC | 8 cut(s) | 341, 858, 1303, 1305, 1479, 1520, 1587, 1635 |
| KasI | GGCGCC | 2 cut(s) | 1478, 1634 |
| KflI | GGGWCCC | 1 cut(s) | 884 |
| Kpn2I | TCCGGA | 2 cut(s) | 587, 949 |
| Kzo9I | GATC | 4 cut(s) | 58, 422, 471, 919 |
| LguI | GCTCTTC | 2 cut(s) | 132, 458 |
| LmnI | GCTCC | 4 cut(s) | 301, 549, 827, 1263 |
| Lsp1109I | GCAGC | 6 cut(s) | 377, 767, 790, 825, 1208, 1636 |
| LweI | GCATC | 4 cut(s) | 886, 1111, 1626, 1636 |
| MaeI | CTAG | 9 cut(s) | 35, 81, 92, 476, 1124, 1578, 1584, 1640, 1734 |
| MaeII | ACGT | 4 cut(s) | 871, 896, 1152, 1435 |
| MaeIII | GTNAC | 3 cut(s) | 681, 1022, 1394 |
| MalI | GATC | 4 cut(s) | 60, 424, 473, 921 |
| MboI | GATC | 4 cut(s) | 58, 422, 471, 919 |
| MflI | RGATCY | 2 cut(s) | 58, 422 |
| MhlI | GDGCHC | 3 cut(s) | 317, 470, 832 |
| MlsI | TGGCCA | 2 cut(s) | 534, 663 |
| MluCI | AATT | 6 cut(s) | 132, 597, 608, 993, 1034, 1702 |
| MluNI | TGGCCA | 2 cut(s) | 534, 663 |
| Mly113I | GGCGCC | 2 cut(s) | 1479, 1635 |
| MlyI | GAGTC | 5 cut(s) | 61, 206, 439, 489, 1231 |
| Mox20I | TGGCCA | 2 cut(s) | 534, 663 |
| MroI | TCCGGA | 2 cut(s) | 587, 949 |
| MscI | TGGCCA | 2 cut(s) | 534, 663 |
| MslI | CAYNNNNRTG | 6 cut(s) | 842, 1232, 1248, 1503, 1626, 1629 |
| Msp20I | TGGCCA | 2 cut(s) | 534, 663 |
| MspR9I | CCNGG | 2 cut(s) | 129, 1148 |
| MvaI | CCWGG | 2 cut(s) | 129, 1148 |
| MvnI | CGCG | 2 cut(s) | 858, 1305 |
| NarI | GGCGCC | 2 cut(s) | 1479, 1635 |
| NcoI | CCATGG | 1 cut(s) | 1608 |
| NdeI | CATATG | 1 cut(s) | 1245 |
| NdeII | GATC | 4 cut(s) | 58, 422, 471, 919 |
| NheI | GCTAGC | 1 cut(s) | 1583 |
| NlaIII | CATG | 6 cut(s) | 847, 868, 1472, 1604, 1612, 1628 |
| NlaIV | GGNNCC | 8 cut(s) | 648, 829, 885, 886, 1322, 1480, 1555, 1636 |
| NmeAIII | GCCGAG | 1 cut(s) | 49 |
| PaeR7I | CTCGAG | 2 cut(s) | 44, 1136 |
| PalAI | GGCGCGCC | 1 cut(s) | 1303 |
| PauI | GCGCGC | 1 cut(s) | 1303 |
| PciSI | GCTCTTC | 2 cut(s) | 132, 458 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 51, 197 |
| PfeI | GAWTC | 6 cut(s) | 237, 407, 640, 1119, 1132, 1253 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 510 |
| PinAI | ACCGGT | 1 cut(s) | 572 |
| PleI | GAGTC | 5 cut(s) | 61, 205, 438, 488, 1231 |
| PluTI | GGCGCC | 2 cut(s) | 1482, 1638 |
| PpsI | GAGTC | 5 cut(s) | 61, 205, 438, 488, 1231 |
| PpuMI | RGGWCCY | 1 cut(s) | 884 |
| Psp124BI | GAGCTC | 1 cut(s) | 470 |
| Psp5II | RGGWCCY | 1 cut(s) | 884 |
| Psp6I | CCWGG | 2 cut(s) | 127, 1146 |
| PspEI | GGTNACC | 1 cut(s) | 1394 |
| PspGI | CCWGG | 2 cut(s) | 127, 1146 |
| PspN4I | GGNNCC | 8 cut(s) | 648, 829, 885, 886, 1322, 1480, 1555, 1636 |
| PspPI | GGNCC | 4 cut(s) | 803, 884, 1367, 1692 |
| PspPPI | RGGWCCY | 1 cut(s) | 884 |
| PstI | CTGCAG | 1 cut(s) | 712 |
| PsuI | RGATCY | 2 cut(s) | 58, 422 |
| PteI | GCGCGC | 1 cut(s) | 1303 |
| RsaI | GTAC | 3 cut(s) | 113, 162, 1265 |
| RsaNI | GTAC | 3 cut(s) | 112, 161, 1264 |
| RseI | CAYNNNNRTG | 6 cut(s) | 842, 1232, 1248, 1503, 1626, 1629 |
| SacI | GAGCTC | 1 cut(s) | 470 |
| SapI | GCTCTTC | 2 cut(s) | 132, 458 |
| Sau3AI | GATC | 4 cut(s) | 58, 422, 471, 919 |
| Sau96I | GGNCC | 4 cut(s) | 803, 884, 1367, 1692 |
| ScaI | AGTACT | 1 cut(s) | 113 |
| SchI | GAGTC | 5 cut(s) | 61, 206, 439, 489, 1231 |
| ScrFI | CCNGG | 2 cut(s) | 129, 1148 |
| SduI | GDGCHC | 3 cut(s) | 317, 470, 832 |
| SfaNI | GCATC | 4 cut(s) | 886, 1111, 1626, 1636 |
| SfcI | CTRYAG | 1 cut(s) | 708 |
| SfoI | GGCGCC | 2 cut(s) | 1480, 1636 |
| Sfr274I | CTCGAG | 2 cut(s) | 44, 1136 |
| SgsI | GGCGCGCC | 1 cut(s) | 1303 |
| SinI | GGWCC | 2 cut(s) | 884, 1367 |
| SlaI | CTCGAG | 2 cut(s) | 44, 1136 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 842, 1232, 1248, 1503, 1626, 1629 |
| SmlI | CTYRAG | 5 cut(s) | 44, 143, 1106, 1136, 1173 |
| SmoI | CTYRAG | 5 cut(s) | 44, 143, 1106, 1136, 1173 |
| Sse9I | AATT | 6 cut(s) | 132, 597, 608, 993, 1034, 1702 |
| SspDI | GGCGCC | 2 cut(s) | 1478, 1634 |
| SspMI | CTAG | 9 cut(s) | 35, 81, 92, 476, 1124, 1578, 1584, 1640, 1734 |
| SstI | GAGCTC | 1 cut(s) | 470 |
| StyD4I | CCNGG | 2 cut(s) | 127, 1146 |
| StyI | CCWWGG | 5 cut(s) | 350, 475, 1577, 1608, 1639 |
| TaaI | ACNGT | 3 cut(s) | 911, 927, 934 |
| TaiI | ACGT | 4 cut(s) | 874, 899, 1155, 1438 |
| TaqI | TCGA | 8 cut(s) | 45, 191, 240, 287, 323, 372, 470, 1137 |
| TasI | AATT | 6 cut(s) | 132, 597, 608, 993, 1034, 1702 |
| TatI | WGTACW | 1 cut(s) | 111 |
| TauI | GCSGC | 4 cut(s) | 778, 790, 813, 858 |
| TfiI | GAWTC | 6 cut(s) | 237, 407, 640, 1119, 1132, 1253 |
| TscAI | CASTG | 2 cut(s) | 799, 844 |
| TseI | GCWGC | 6 cut(s) | 365, 755, 778, 813, 1196, 1649 |
| TspDTI | ATGAA | 4 cut(s) | 168, 375, 1289, 1293 |
| TspGWI | ACGGA | 2 cut(s) | 237, 1552 |
| TspRI | CASTG | 2 cut(s) | 799, 844 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 510 |
| VpaK11BI | GGWCC | 2 cut(s) | 884, 1367 |
| XapI | RAATTY | 3 cut(s) | 608, 993, 1702 |
| XbaI | TCTAGA | 1 cut(s) | 34 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1628 |
| XhoI | CTCGAG | 2 cut(s) | 44, 1136 |
| XmaJI | CCTAGG | 3 cut(s) | 475, 1577, 1639 |
| XspI | CTAG | 9 cut(s) | 35, 81, 92, 476, 1124, 1578, 1584, 1640, 1734 |
| ZrmI | AGTACT | 1 cut(s) | 113 |