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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 720 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 585 |
| Acc36I | ACCTGC | 1 cut(s) | 720 |
| AccB1I | GGYRCC | 2 cut(s) | 540, 692 |
| AccII | CGCG | 1 cut(s) | 525 |
| AciI | CCGC | 3 cut(s) | 79, 217, 696 |
| AclWI | GGATC | 2 cut(s) | 119, 477 |
| AcsI | RAATTY | 2 cut(s) | 284, 841 |
| AcyI | GRCGYC | 1 cut(s) | 541 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 536, 718, 722 |
| AgsI | TTSAA | 5 cut(s) | 53, 152, 232, 671, 809 |
| AjnI | CCWGG | 3 cut(s) | 688, 715, 778 |
| AluBI | AGCT | 3 cut(s) | 418, 428, 686 |
| AluI | AGCT | 3 cut(s) | 418, 428, 686 |
| Alw21I | GWGCWC | 1 cut(s) | 420 |
| Alw26I | GTCTC | 2 cut(s) | 148, 352 |
| AlwI | GGATC | 2 cut(s) | 119, 477 |
| AoxI | GGCC | 3 cut(s) | 93, 653, 830 |
| ApoI | RAATTY | 2 cut(s) | 284, 841 |
| AseI | ATTAAT | 1 cut(s) | 665 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 261 |
| AspLEI | GCGC | 2 cut(s) | 527, 543 |
| AspS9I | GGNCC | 2 cut(s) | 587, 653 |
| AsuHPI | GGTGA | 3 cut(s) | 779, 787, 794 |
| AvaII | GGWCC | 1 cut(s) | 587 |
| BanI | GGYRCC | 2 cut(s) | 540, 692 |
| BanII | GRGCYC | 1 cut(s) | 420 |
| BbsI | GAAGAC | 1 cut(s) | 332 |
| Bbv12I | GWGCWC | 1 cut(s) | 420 |
| BccI | CCATC | 6 cut(s) | 92, 198, 352, 640, 764, 768 |
| BciT130I | CCWGG | 3 cut(s) | 690, 717, 780 |
| BciVI | GTATCC | 1 cut(s) | 95 |
| BcoDI | GTCTC | 2 cut(s) | 148, 352 |
| BfaI | CTAG | 1 cut(s) | 194 |
| BfoI | RGCGCY | 1 cut(s) | 544 |
| BfuAI | ACCTGC | 1 cut(s) | 720 |
| BfuI | GTATCC | 1 cut(s) | 95 |
| Bme1390I | CCNGG | 3 cut(s) | 690, 717, 780 |
| Bme18I | GGWCC | 1 cut(s) | 587 |
| BmgT120I | GGNCC | 2 cut(s) | 587, 653 |
| BmiI | GGNNCC | 3 cut(s) | 542, 694, 775 |
| BmrFI | CCNGG | 3 cut(s) | 690, 717, 780 |
| BmsI | GCATC | 2 cut(s) | 94, 775 |
| BpiI | GAAGAC | 1 cut(s) | 332 |
| BpmI | CTGGAG | 1 cut(s) | 672 |
| Bpu10I | CCTNAGC | 1 cut(s) | 827 |
| BpuEI | CTTGAG | 1 cut(s) | 74 |
| BsaHI | GRCGYC | 1 cut(s) | 541 |
| BsaI | GGTCTC | 1 cut(s) | 148 |
| BsaJI | CCNNGG | 4 cut(s) | 486, 716, 747, 778 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 536, 718, 722 |
| Bse1I | ACTGG | 1 cut(s) | 49 |
| BseBI | CCWGG | 3 cut(s) | 690, 717, 780 |
| BseDI | CCNNGG | 4 cut(s) | 486, 716, 747, 778 |
| BseGI | GGATG | 1 cut(s) | 456 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 536, 718, 722 |
| BseMII | CTCAG | 1 cut(s) | 841 |
| BseNI | ACTGG | 1 cut(s) | 49 |
| BseYI | CCCAGC | 1 cut(s) | 650 |
| Bsh1236I | CGCG | 1 cut(s) | 525 |
| BshFI | GGCC | 3 cut(s) | 95, 655, 832 |
| BshNI | GGYRCC | 2 cut(s) | 540, 692 |
| BsiHKAI | GWGCWC | 1 cut(s) | 420 |
| BslFI | GGGAC | 1 cut(s) | 716 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 536, 718, 722 |
| BsmAI | GTCTC | 2 cut(s) | 148, 352 |
| BsmBI | CGTCTC | 1 cut(s) | 352 |
| BsmFI | GGGAC | 1 cut(s) | 716 |
| BsnI | GGCC | 3 cut(s) | 95, 655, 832 |
| Bso31I | GGTCTC | 1 cut(s) | 148 |
| Bsp1286I | GDGCHC | 1 cut(s) | 420 |
| Bsp143I | GATC | 3 cut(s) | 124, 300, 482 |
| Bsp19I | CCATGG | 1 cut(s) | 747 |
| BspACI | CCGC | 3 cut(s) | 79, 217, 696 |
| BspANI | GGCC | 3 cut(s) | 95, 655, 832 |
| BspCNI | CTCAG | 1 cut(s) | 840 |
| BspFNI | CGCG | 1 cut(s) | 525 |
| BspHI | TCATGA | 1 cut(s) | 412 |
| BspLI | GGNNCC | 3 cut(s) | 542, 694, 775 |
| BspMI | ACCTGC | 1 cut(s) | 720 |
| BspPI | GGATC | 2 cut(s) | 119, 477 |
| BspT107I | GGYRCC | 2 cut(s) | 540, 692 |
| BspTNI | GGTCTC | 1 cut(s) | 148 |
| BsrI | ACTGG | 1 cut(s) | 49 |
| BssECI | CCNNGG | 4 cut(s) | 486, 716, 747, 778 |
| BssMI | GATC | 3 cut(s) | 124, 300, 482 |
| BssNI | GRCGYC | 1 cut(s) | 541 |
| BssT1I | CCWWGG | 1 cut(s) | 747 |
| Bst2UI | CCWGG | 3 cut(s) | 690, 717, 780 |
| Bst4CI | ACNGT | 1 cut(s) | 730 |
| BstACI | GRCGYC | 1 cut(s) | 541 |
| BstC8I | GCNNGC | 2 cut(s) | 83, 724 |
| BstDEI | CTNAG | 3 cut(s) | 366, 563, 827 |
| BstDSI | CCRYGG | 2 cut(s) | 486, 747 |
| BstF5I | GGATG | 1 cut(s) | 456 |
| BstFNI | CGCG | 1 cut(s) | 525 |
| BstH2I | RGCGCY | 1 cut(s) | 544 |
| BstHHI | GCGC | 2 cut(s) | 527, 543 |
| BstKTI | GATC | 3 cut(s) | 127, 303, 485 |
| BstMAI | GTCTC | 2 cut(s) | 148, 352 |
| BstMBI | GATC | 3 cut(s) | 124, 300, 482 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 547 |
| BstNI | CCWGG | 3 cut(s) | 690, 717, 780 |
| BstSCI | CCNGG | 3 cut(s) | 688, 715, 778 |
| BstUI | CGCG | 1 cut(s) | 525 |
| BstV2I | GAAGAC | 1 cut(s) | 332 |
| BstX2I | RGATCY | 2 cut(s) | 124, 482 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 716 |
| BstYI | RGATCY | 2 cut(s) | 124, 482 |
| BsuI | GTATCC | 1 cut(s) | 95 |
| BsuRI | GGCC | 3 cut(s) | 95, 655, 832 |
| BtgI | CCRYGG | 2 cut(s) | 486, 747 |
| BtgZI | GCGATG | 1 cut(s) | 326 |
| BtsCI | GGATG | 1 cut(s) | 456 |
| BtsIMutI | CAGTG | 1 cut(s) | 438 |
| BveI | ACCTGC | 1 cut(s) | 720 |
| Cac8I | GCNNGC | 2 cut(s) | 83, 724 |
| CciI | TCATGA | 1 cut(s) | 412 |
| CfoI | GCGC | 2 cut(s) | 527, 543 |
| Cfr13I | GGNCC | 2 cut(s) | 587, 653 |
| CseI | GACGC | 2 cut(s) | 745, 832 |
| CviAII | CATG | 5 cut(s) | 413, 449, 677, 748, 764 |
| DdeI | CTNAG | 3 cut(s) | 366, 563, 827 |
| DinI | GGCGCC | 1 cut(s) | 542 |
| DpnI | GATC | 3 cut(s) | 126, 302, 484 |
| DpnII | GATC | 3 cut(s) | 124, 300, 482 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 585 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 585 |
| EciI | GGCGGA | 1 cut(s) | 68 |
| Ecl136II | GAGCTC | 1 cut(s) | 418 |
| Eco130I | CCWWGG | 1 cut(s) | 747 |
| Eco147I | AGGCCT | 1 cut(s) | 832 |
| Eco24I | GRGCYC | 1 cut(s) | 420 |
| Eco31I | GGTCTC | 1 cut(s) | 148 |
| Eco32I | GATATC | 1 cut(s) | 76 |
| Eco47I | GGWCC | 1 cut(s) | 587 |
| Eco53kI | GAGCTC | 1 cut(s) | 418 |
| EcoICRI | GAGCTC | 1 cut(s) | 418 |
| EcoRI | GAATTC | 1 cut(s) | 284 |
| EcoRII | CCWGG | 3 cut(s) | 688, 715, 778 |
| EcoRV | GATATC | 1 cut(s) | 76 |
| EcoT14I | CCWWGG | 1 cut(s) | 747 |
| EcoT38I | GRGCYC | 1 cut(s) | 420 |
| EgeI | GGCGCC | 1 cut(s) | 542 |
| EheI | GGCGCC | 1 cut(s) | 542 |
| ErhI | CCWWGG | 1 cut(s) | 747 |
| Esp3I | CGTCTC | 1 cut(s) | 352 |
| FaeI | CATG | 5 cut(s) | 416, 452, 680, 751, 767 |
| FaqI | GGGAC | 1 cut(s) | 716 |
| FatI | CATG | 5 cut(s) | 412, 448, 676, 747, 763 |
| FokI | GGATG | 1 cut(s) | 443 |
| FriOI | GRGCYC | 1 cut(s) | 420 |
| FspBI | CTAG | 1 cut(s) | 194 |
| GlaI | GCGC | 2 cut(s) | 526, 542 |
| GsaI | CCCAGC | 1 cut(s) | 654 |
| GsuI | CTGGAG | 1 cut(s) | 672 |
| HaeII | RGCGCY | 1 cut(s) | 544 |
| HaeIII | GGCC | 3 cut(s) | 95, 655, 832 |
| HgaI | GACGC | 2 cut(s) | 745, 832 |
| HhaI | GCGC | 2 cut(s) | 527, 543 |
| Hin1I | GRCGYC | 1 cut(s) | 541 |
| Hin1II | CATG | 5 cut(s) | 416, 452, 680, 751, 767 |
| Hin6I | GCGC | 2 cut(s) | 525, 541 |
| HinP1I | GCGC | 2 cut(s) | 525, 541 |
| HinfI | GANTC | 6 cut(s) | 176, 328, 378, 399, 509, 616 |
| HphI | GGTGA | 3 cut(s) | 779, 787, 794 |
| Hpy166II | GTNNAC | 1 cut(s) | 706 |
| Hpy188I | TCNGA | 1 cut(s) | 822 |
| Hpy188III | TCNNGA | 5 cut(s) | 71, 188, 413, 480, 506 |
| Hpy8I | GTNNAC | 1 cut(s) | 706 |
| HpyAV | CCTTC | 2 cut(s) | 126, 605 |
| HpyCH4III | ACNGT | 1 cut(s) | 730 |
| HpyCH4IV | ACGT | 2 cut(s) | 168, 580 |
| HpyCH4V | TGCA | 2 cut(s) | 353, 392 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 547 |
| HpyF3I | CTNAG | 3 cut(s) | 366, 563, 827 |
| HpySE526I | ACGT | 2 cut(s) | 168, 580 |
| Hsp92I | GRCGYC | 1 cut(s) | 541 |
| Hsp92II | CATG | 5 cut(s) | 416, 452, 680, 751, 767 |
| HspAI | GCGC | 2 cut(s) | 525, 541 |
| KasI | GGCGCC | 1 cut(s) | 540 |
| Kzo9I | GATC | 3 cut(s) | 124, 300, 482 |
| LmnI | GCTCC | 4 cut(s) | 34, 425, 691, 779 |
| LweI | GCATC | 2 cut(s) | 94, 775 |
| MaeI | CTAG | 1 cut(s) | 194 |
| MaeII | ACGT | 2 cut(s) | 168, 580 |
| MaeIII | GTNAC | 7 cut(s) | 5, 173, 361, 385, 436, 637, 852 |
| MalI | GATC | 3 cut(s) | 126, 302, 484 |
| MboI | GATC | 3 cut(s) | 124, 300, 482 |
| MboII | GAAGA | 5 cut(s) | 131, 134, 164, 337, 478 |
| MflI | RGATCY | 2 cut(s) | 124, 482 |
| MhlI | GDGCHC | 1 cut(s) | 420 |
| MluCI | AATT | 6 cut(s) | 17, 284, 475, 514, 666, 841 |
| Mly113I | GGCGCC | 1 cut(s) | 541 |
| MlyI | GAGTC | 2 cut(s) | 170, 322 |
| MnlI | CCTC | 5 cut(s) | 224, 353, 530, 709, 876 |
| MroXI | GAANNNNTTC | 1 cut(s) | 261 |
| MseI | TTAA | 5 cut(s) | 243, 270, 278, 558, 665 |
| MslI | CAYNNNNRTG | 3 cut(s) | 461, 765, 768 |
| MspR9I | CCNGG | 3 cut(s) | 690, 717, 780 |
| MvaI | CCWGG | 3 cut(s) | 690, 717, 780 |
| MvnI | CGCG | 1 cut(s) | 525 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 547 |
| NarI | GGCGCC | 1 cut(s) | 541 |
| NcoI | CCATGG | 1 cut(s) | 747 |
| NdeII | GATC | 3 cut(s) | 124, 300, 482 |
| NlaIII | CATG | 5 cut(s) | 416, 452, 680, 751, 767 |
| NlaIV | GGNNCC | 3 cut(s) | 542, 694, 775 |
| NmuCI | GTSAC | 3 cut(s) | 173, 436, 637 |
| PagI | TCATGA | 1 cut(s) | 412 |
| PaqCI | CACCTGC | 1 cut(s) | 720 |
| PceI | AGGCCT | 1 cut(s) | 832 |
| PdmI | GAANNNNTTC | 1 cut(s) | 261 |
| PfeI | GAWTC | 4 cut(s) | 378, 399, 509, 616 |
| PleI | GAGTC | 2 cut(s) | 170, 322 |
| PluTI | GGCGCC | 1 cut(s) | 544 |
| PpsI | GAGTC | 2 cut(s) | 170, 322 |
| PshBI | ATTAAT | 1 cut(s) | 665 |
| Psp124BI | GAGCTC | 1 cut(s) | 420 |
| Psp6I | CCWGG | 3 cut(s) | 688, 715, 778 |
| PspFI | CCCAGC | 1 cut(s) | 650 |
| PspGI | CCWGG | 3 cut(s) | 688, 715, 778 |
| PspN4I | GGNNCC | 3 cut(s) | 542, 694, 775 |
| PspPI | GGNCC | 2 cut(s) | 587, 653 |
| PsuI | RGATCY | 2 cut(s) | 124, 482 |
| RseI | CAYNNNNRTG | 3 cut(s) | 461, 765, 768 |
| SacI | GAGCTC | 1 cut(s) | 420 |
| SaqAI | TTAA | 5 cut(s) | 243, 270, 278, 558, 665 |
| Sau3AI | GATC | 3 cut(s) | 124, 300, 482 |
| Sau96I | GGNCC | 2 cut(s) | 587, 653 |
| SchI | GAGTC | 2 cut(s) | 170, 322 |
| ScrFI | CCNGG | 3 cut(s) | 690, 717, 780 |
| SduI | GDGCHC | 1 cut(s) | 420 |
| SfaNI | GCATC | 2 cut(s) | 94, 775 |
| SfoI | GGCGCC | 1 cut(s) | 542 |
| SinI | GGWCC | 1 cut(s) | 587 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 461, 765, 768 |
| SmlI | CTYRAG | 1 cut(s) | 89 |
| SmoI | CTYRAG | 1 cut(s) | 89 |
| Sse9I | AATT | 6 cut(s) | 17, 284, 475, 514, 666, 841 |
| SseBI | AGGCCT | 1 cut(s) | 832 |
| SsiI | CCGC | 3 cut(s) | 79, 217, 696 |
| SspDI | GGCGCC | 1 cut(s) | 540 |
| SspMI | CTAG | 1 cut(s) | 194 |
| SstI | GAGCTC | 1 cut(s) | 420 |
| StuI | AGGCCT | 1 cut(s) | 832 |
| StyD4I | CCNGG | 3 cut(s) | 688, 715, 778 |
| StyI | CCWWGG | 1 cut(s) | 747 |
| TaaI | ACNGT | 1 cut(s) | 730 |
| TaiI | ACGT | 2 cut(s) | 171, 583 |
| TaqI | TCGA | 2 cut(s) | 376, 479 |
| TasI | AATT | 6 cut(s) | 17, 284, 475, 514, 666, 841 |
| TfiI | GAWTC | 4 cut(s) | 378, 399, 509, 616 |
| Tru1I | TTAA | 5 cut(s) | 243, 270, 278, 558, 665 |
| Tru9I | TTAA | 5 cut(s) | 243, 270, 278, 558, 665 |
| TscAI | CASTG | 1 cut(s) | 445 |
| TseFI | GTSAC | 3 cut(s) | 173, 436, 637 |
| Tsp45I | GTSAC | 3 cut(s) | 173, 436, 637 |
| TspDTI | ATGAA | 4 cut(s) | 128, 132, 401, 446 |
| TspGWI | ACGGA | 4 cut(s) | 161, 475, 691, 882 |
| TspRI | CASTG | 1 cut(s) | 445 |
| VpaK11BI | GGWCC | 1 cut(s) | 587 |
| VspI | ATTAAT | 1 cut(s) | 665 |
| XapI | RAATTY | 2 cut(s) | 284, 841 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 713, 767 |
| XmnI | GAANNNNTTC | 1 cut(s) | 261 |
| XspI | CTAG | 1 cut(s) | 194 |