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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 569 |
| AccII | CGCG | 1 cut(s) | 408 |
| AcuI | CTGAAG | 2 cut(s) | 31, 405 |
| AcvI | CACGTG | 1 cut(s) | 566 |
| AdeI | CACNNNGTG | 1 cut(s) | 569 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 473, 497, 569 |
| AgsI | TTSAA | 2 cut(s) | 56, 125 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 23 |
| AjiI | CACGTC | 1 cut(s) | 551 |
| AjnI | CCWGG | 2 cut(s) | 115, 585 |
| AluBI | AGCT | 3 cut(s) | 194, 204, 599 |
| AluI | AGCT | 3 cut(s) | 194, 204, 599 |
| Alw21I | GWGCWC | 1 cut(s) | 196 |
| Alw26I | GTCTC | 1 cut(s) | 463 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 204 |
| AoxI | GGCC | 4 cut(s) | 455, 488, 499, 559 |
| ApaI | GGGCCC | 1 cut(s) | 492 |
| ApeKI | GCWGC | 1 cut(s) | 247 |
| AspS9I | GGNCC | 9 cut(s) | 6, 17, 25, 67, 488, 489, 500, 560, 589 |
| AsuC2I | CCSGG | 1 cut(s) | 434 |
| AsuHPI | GGTGA | 1 cut(s) | 286 |
| AvaII | GGWCC | 5 cut(s) | 6, 17, 25, 67, 589 |
| BaeGI | GKGCMC | 1 cut(s) | 492 |
| BanII | GRGCYC | 2 cut(s) | 196, 492 |
| BbrPI | CACGTG | 1 cut(s) | 566 |
| Bbv12I | GWGCWC | 1 cut(s) | 196 |
| BbvI | GCAGC | 1 cut(s) | 259 |
| BccI | CCATC | 2 cut(s) | 67, 411 |
| BciT130I | CCWGG | 2 cut(s) | 117, 587 |
| BclI | TGATCA | 1 cut(s) | 343 |
| BcnI | CCSGG | 1 cut(s) | 434 |
| BcoDI | GTCTC | 1 cut(s) | 463 |
| BfaI | CTAG | 2 cut(s) | 42, 276 |
| BisI | GCNGC | 1 cut(s) | 248 |
| BlsI | GCNGC | 1 cut(s) | 249 |
| Bme1390I | CCNGG | 3 cut(s) | 117, 434, 587 |
| Bme18I | GGWCC | 5 cut(s) | 6, 17, 25, 67, 589 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 23 |
| BmgBI | CACGTC | 1 cut(s) | 551 |
| BmgT120I | GGNCC | 9 cut(s) | 6, 17, 25, 67, 488, 489, 500, 560, 589 |
| BmiI | GGNNCC | 3 cut(s) | 19, 27, 490 |
| BmrFI | CCNGG | 3 cut(s) | 117, 434, 587 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 129, 161, 178, 210 |
| BpuMI | CCSGG | 1 cut(s) | 434 |
| BsaAI | YACGTR | 1 cut(s) | 566 |
| BsaJI | CCNNGG | 3 cut(s) | 21, 433, 585 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 221, 251 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 473, 497, 569 |
| Bse1I | ACTGG | 2 cut(s) | 102, 360 |
| Bse3DI | GCAATG | 1 cut(s) | 357 |
| BseBI | CCWGG | 2 cut(s) | 117, 587 |
| BseDI | CCNNGG | 3 cut(s) | 21, 433, 585 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 473, 497, 569 |
| BseMI | GCAATG | 1 cut(s) | 357 |
| BseMII | CTCAG | 1 cut(s) | 297 |
| BseNI | ACTGG | 2 cut(s) | 102, 360 |
| BseSI | GKGCMC | 1 cut(s) | 492 |
| BseXI | GCAGC | 1 cut(s) | 259 |
| Bsh1236I | CGCG | 1 cut(s) | 408 |
| BshFI | GGCC | 4 cut(s) | 457, 490, 501, 561 |
| BsiHKAI | GWGCWC | 1 cut(s) | 196 |
| BsiSI | CCGG | 3 cut(s) | 81, 158, 433 |
| BslFI | GGGAC | 1 cut(s) | 11 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 473, 497, 569 |
| BsmAI | GTCTC | 1 cut(s) | 463 |
| BsmFI | GGGAC | 1 cut(s) | 11 |
| BsnI | GGCC | 4 cut(s) | 457, 490, 501, 561 |
| Bsp120I | GGGCCC | 1 cut(s) | 488 |
| Bsp1286I | GDGCHC | 2 cut(s) | 196, 492 |
| Bsp143I | GATC | 2 cut(s) | 206, 343 |
| Bsp68I | TCGCGA | 1 cut(s) | 408 |
| BspANI | GGCC | 4 cut(s) | 457, 490, 501, 561 |
| BspCNI | CTCAG | 1 cut(s) | 296 |
| BspFNI | CGCG | 1 cut(s) | 408 |
| BspLI | GGNNCC | 3 cut(s) | 19, 27, 490 |
| BspQI | GCTCTTC | 2 cut(s) | 40, 184 |
| BsrDI | GCAATG | 1 cut(s) | 357 |
| BsrI | ACTGG | 2 cut(s) | 102, 360 |
| BssECI | CCNNGG | 3 cut(s) | 21, 433, 585 |
| BssMI | GATC | 2 cut(s) | 206, 343 |
| Bst2UI | CCWGG | 2 cut(s) | 117, 587 |
| Bst4CI | ACNGT | 4 cut(s) | 25, 131, 298, 512 |
| Bst6I | CTCTTC | 3 cut(s) | 7, 40, 184 |
| BstBAI | YACGTR | 1 cut(s) | 566 |
| BstDEI | CTNAG | 1 cut(s) | 283 |
| BstDSI | CCRYGG | 1 cut(s) | 21 |
| BstEII | GGTNACC | 1 cut(s) | 292 |
| BstFNI | CGCG | 1 cut(s) | 408 |
| BstKTI | GATC | 2 cut(s) | 209, 346 |
| BstMAI | GTCTC | 1 cut(s) | 463 |
| BstMBI | GATC | 2 cut(s) | 206, 343 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 98 |
| BstNI | CCWGG | 2 cut(s) | 117, 587 |
| BstPI | GGTNACC | 1 cut(s) | 292 |
| BstSCI | CCNGG | 3 cut(s) | 115, 432, 585 |
| BstSLI | GKGCMC | 1 cut(s) | 492 |
| BstUI | CGCG | 1 cut(s) | 408 |
| BstV1I | GCAGC | 1 cut(s) | 259 |
| BsuRI | GGCC | 4 cut(s) | 457, 490, 501, 561 |
| BtgI | CCRYGG | 1 cut(s) | 21 |
| BtgZI | GCGATG | 1 cut(s) | 389 |
| BtrI | CACGTC | 1 cut(s) | 551 |
| BtuMI | TCGCGA | 1 cut(s) | 408 |
| CaiI | CAGNNNCTG | 1 cut(s) | 204 |
| Cfr13I | GGNCC | 9 cut(s) | 6, 17, 25, 67, 488, 489, 500, 560, 589 |
| CviAII | CATG | 1 cut(s) | 473 |
| CviJI | RGCY | 7 cut(s) | 194, 204, 457, 490, 501, 561, 599 |
| CviKI_1 | RGCY | 7 cut(s) | 194, 204, 457, 490, 501, 561, 599 |
| DdeI | CTNAG | 1 cut(s) | 283 |
| DpnI | GATC | 2 cut(s) | 208, 345 |
| DpnII | GATC | 2 cut(s) | 206, 343 |
| DraIII | CACNNNGTG | 1 cut(s) | 569 |
| DriI | GACNNNNNGTC | 1 cut(s) | 23 |
| Eam1104I | CTCTTC | 3 cut(s) | 7, 40, 184 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 23 |
| EarI | CTCTTC | 3 cut(s) | 7, 40, 184 |
| Ecl136II | GAGCTC | 1 cut(s) | 194 |
| Eco147I | AGGCCT | 1 cut(s) | 457 |
| Eco24I | GRGCYC | 2 cut(s) | 196, 492 |
| Eco47I | GGWCC | 5 cut(s) | 6, 17, 25, 67, 589 |
| Eco53kI | GAGCTC | 1 cut(s) | 194 |
| Eco57I | CTGAAG | 2 cut(s) | 31, 405 |
| Eco72I | CACGTG | 1 cut(s) | 566 |
| Eco91I | GGTNACC | 1 cut(s) | 292 |
| EcoICRI | GAGCTC | 1 cut(s) | 194 |
| EcoO109I | RGGNCCY | 2 cut(s) | 6, 17 |
| EcoO65I | GGTNACC | 1 cut(s) | 292 |
| EcoRII | CCWGG | 2 cut(s) | 115, 585 |
| EcoT38I | GRGCYC | 2 cut(s) | 196, 492 |
| FaeI | CATG | 1 cut(s) | 476 |
| FaiI | YATR | 6 cut(s) | 108, 142, 182, 474, 505, 507 |
| FaqI | GGGAC | 1 cut(s) | 11 |
| FatI | CATG | 1 cut(s) | 472 |
| FauNDI | CATATG | 1 cut(s) | 505 |
| FbaI | TGATCA | 1 cut(s) | 343 |
| Fnu4HI | GCNGC | 1 cut(s) | 248 |
| FriOI | GRGCYC | 2 cut(s) | 196, 492 |
| Fsp4HI | GCNGC | 1 cut(s) | 248 |
| FspBI | CTAG | 2 cut(s) | 42, 276 |
| GluI | GCNGC | 1 cut(s) | 248 |
| HaeIII | GGCC | 4 cut(s) | 457, 490, 501, 561 |
| HapII | CCGG | 3 cut(s) | 81, 158, 433 |
| Hin1II | CATG | 1 cut(s) | 476 |
| HindIII | AAGCTT | 1 cut(s) | 597 |
| HinfI | GANTC | 3 cut(s) | 52, 161, 279 |
| HpaII | CCGG | 3 cut(s) | 81, 158, 433 |
| HphI | GGTGA | 1 cut(s) | 286 |
| Hpy166II | GTNNAC | 1 cut(s) | 554 |
| Hpy188I | TCNGA | 3 cut(s) | 149, 286, 468 |
| Hpy188III | TCNNGA | 3 cut(s) | 42, 125, 407 |
| Hpy8I | GTNNAC | 1 cut(s) | 554 |
| HpyAV | CCTTC | 5 cut(s) | 242, 250, 438, 444, 471 |
| HpyCH4III | ACNGT | 4 cut(s) | 25, 131, 298, 512 |
| HpyCH4IV | ACGT | 5 cut(s) | 110, 463, 523, 550, 565 |
| HpyCH4V | TGCA | 2 cut(s) | 247, 422 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 98 |
| HpyF3I | CTNAG | 1 cut(s) | 283 |
| HpySE526I | ACGT | 5 cut(s) | 110, 463, 523, 550, 565 |
| Hsp92II | CATG | 1 cut(s) | 476 |
| Ksp22I | TGATCA | 1 cut(s) | 343 |
| Kzo9I | GATC | 2 cut(s) | 206, 343 |
| LguI | GCTCTTC | 2 cut(s) | 40, 184 |
| Lsp1109I | GCAGC | 1 cut(s) | 259 |
| MaeI | CTAG | 2 cut(s) | 42, 276 |
| MaeII | ACGT | 5 cut(s) | 110, 463, 523, 550, 565 |
| MaeIII | GTNAC | 4 cut(s) | 35, 166, 292, 512 |
| MalI | GATC | 2 cut(s) | 208, 345 |
| MboI | GATC | 2 cut(s) | 206, 343 |
| MboII | GAAGA | 3 cut(s) | 24, 57, 201 |
| MfeI | CAATTG | 1 cut(s) | 390 |
| MhlI | GDGCHC | 2 cut(s) | 196, 492 |
| MluCI | AATT | 4 cut(s) | 177, 287, 372, 390 |
| MmeI | TCCRAC | 1 cut(s) | 544 |
| MnlI | CCTC | 6 cut(s) | 8, 247, 330, 447, 527, 530 |
| MseI | TTAA | 1 cut(s) | 601 |
| MspI | CCGG | 3 cut(s) | 81, 158, 433 |
| MspR9I | CCNGG | 3 cut(s) | 117, 434, 587 |
| MunI | CAATTG | 1 cut(s) | 390 |
| MvaI | CCWGG | 2 cut(s) | 117, 587 |
| MvnI | CGCG | 1 cut(s) | 408 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 98 |
| NciI | CCSGG | 1 cut(s) | 434 |
| NdeI | CATATG | 1 cut(s) | 505 |
| NdeII | GATC | 2 cut(s) | 206, 343 |
| NlaIII | CATG | 1 cut(s) | 476 |
| NlaIV | GGNNCC | 3 cut(s) | 19, 27, 490 |
| NmuCI | GTSAC | 4 cut(s) | 35, 166, 292, 512 |
| NruI | TCGCGA | 1 cut(s) | 408 |
| PceI | AGGCCT | 1 cut(s) | 457 |
| PciSI | GCTCTTC | 2 cut(s) | 40, 184 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 547 |
| PfeI | GAWTC | 3 cut(s) | 52, 161, 279 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 569 |
| PfoI | TCCNGGA | 1 cut(s) | 115 |
| PkrI | GCNGC | 1 cut(s) | 249 |
| PmaCI | CACGTG | 1 cut(s) | 566 |
| PmlI | CACGTG | 1 cut(s) | 566 |
| Ppu21I | YACGTR | 1 cut(s) | 566 |
| PpuMI | RGGWCCY | 2 cut(s) | 6, 17 |
| Psp124BI | GAGCTC | 1 cut(s) | 196 |
| Psp5II | RGGWCCY | 2 cut(s) | 6, 17 |
| Psp6I | CCWGG | 2 cut(s) | 115, 585 |
| PspCI | CACGTG | 1 cut(s) | 566 |
| PspEI | GGTNACC | 1 cut(s) | 292 |
| PspGI | CCWGG | 2 cut(s) | 115, 585 |
| PspN4I | GGNNCC | 3 cut(s) | 19, 27, 490 |
| PspOMI | GGGCCC | 1 cut(s) | 488 |
| PspPI | GGNCC | 9 cut(s) | 6, 17, 25, 67, 488, 489, 500, 560, 589 |
| PspPPI | RGGWCCY | 2 cut(s) | 6, 17 |
| PstNI | CAGNNNCTG | 1 cut(s) | 204 |
| RruI | TCGCGA | 1 cut(s) | 408 |
| SacI | GAGCTC | 1 cut(s) | 196 |
| SapI | GCTCTTC | 2 cut(s) | 40, 184 |
| SaqAI | TTAA | 1 cut(s) | 601 |
| SatI | GCNGC | 1 cut(s) | 248 |
| Sau3AI | GATC | 2 cut(s) | 206, 343 |
| Sau96I | GGNCC | 9 cut(s) | 6, 17, 25, 67, 488, 489, 500, 560, 589 |
| ScrFI | CCNGG | 3 cut(s) | 117, 434, 587 |
| SduI | GDGCHC | 2 cut(s) | 196, 492 |
| SinI | GGWCC | 5 cut(s) | 6, 17, 25, 67, 589 |
| Sse9I | AATT | 4 cut(s) | 177, 287, 372, 390 |
| SseBI | AGGCCT | 1 cut(s) | 457 |
| SspMI | CTAG | 2 cut(s) | 42, 276 |
| SstI | GAGCTC | 1 cut(s) | 196 |
| StuI | AGGCCT | 1 cut(s) | 457 |
| StyD4I | CCNGG | 3 cut(s) | 115, 432, 585 |
| TaaI | ACNGT | 4 cut(s) | 25, 131, 298, 512 |
| TaiI | ACGT | 5 cut(s) | 113, 466, 526, 553, 568 |
| TaqI | TCGA | 1 cut(s) | 541 |
| TaqII | GACCGA | 1 cut(s) | 154 |
| TasI | AATT | 4 cut(s) | 177, 287, 372, 390 |
| TfiI | GAWTC | 3 cut(s) | 52, 161, 279 |
| Tru1I | TTAA | 1 cut(s) | 601 |
| Tru9I | TTAA | 1 cut(s) | 601 |
| TseFI | GTSAC | 4 cut(s) | 35, 166, 292, 512 |
| TseI | GCWGC | 1 cut(s) | 247 |
| Tsp45I | GTSAC | 4 cut(s) | 35, 166, 292, 512 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 569 |
| VpaK11BI | GGWCC | 5 cut(s) | 6, 17, 25, 67, 589 |
| XbaI | TCTAGA | 1 cut(s) | 41 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 28 |
| XspI | CTAG | 2 cut(s) | 42, 276 |