gag-polypeptide of LTR copia-type
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 30 |
| AccII | CGCG | 1 cut(s) | 133 |
| AciI | CCGC | 2 cut(s) | 65, 382 |
| AcsI | RAATTY | 1 cut(s) | 218 |
| AfaI | GTAC | 2 cut(s) | 253, 295 |
| AflIII | ACRYGT | 1 cut(s) | 248 |
| AgsI | TTSAA | 1 cut(s) | 178 |
| AjiI | CACGTC | 1 cut(s) | 439 |
| AleI | CACNNNNGTG | 1 cut(s) | 36 |
| AluBI | AGCT | 4 cut(s) | 272, 351, 458, 464 |
| AluI | AGCT | 4 cut(s) | 272, 351, 458, 464 |
| Alw26I | GTCTC | 2 cut(s) | 203, 239 |
| Ama87I | CYCGRG | 1 cut(s) | 422 |
| ApeKI | GCWGC | 6 cut(s) | 11, 20, 41, 57, 94, 482 |
| ApoI | RAATTY | 1 cut(s) | 218 |
| AspLEI | GCGC | 2 cut(s) | 31, 135 |
| AvaI | CYCGRG | 1 cut(s) | 422 |
| BbvI | GCAGC | 5 cut(s) | 28, 32, 69, 106, 494 |
| BccI | CCATC | 2 cut(s) | 395, 518 |
| BciVI | GTATCC | 1 cut(s) | 406 |
| BclI | TGATCA | 1 cut(s) | 160 |
| BcoDI | GTCTC | 2 cut(s) | 203, 239 |
| BfaI | CTAG | 3 cut(s) | 348, 429, 547 |
| BfmI | CTRYAG | 2 cut(s) | 18, 55 |
| BfuI | GTATCC | 1 cut(s) | 406 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 491 |
| BisI | GCNGC | 7 cut(s) | 12, 21, 42, 58, 66, 95, 483 |
| BlsI | GCNGC | 7 cut(s) | 13, 22, 43, 59, 67, 96, 484 |
| BmeT110I | CYCGRG | 1 cut(s) | 422 |
| BmgBI | CACGTC | 1 cut(s) | 439 |
| BmiI | GGNNCC | 1 cut(s) | 154 |
| BmsI | GCATC | 1 cut(s) | 397 |
| BpuEI | CTTGAG | 2 cut(s) | 377, 444 |
| Bse3DI | GCAATG | 1 cut(s) | 60 |
| BseGI | GGATG | 2 cut(s) | 513, 541 |
| BseMI | GCAATG | 1 cut(s) | 60 |
| BseXI | GCAGC | 5 cut(s) | 28, 32, 69, 106, 494 |
| BsgI | GTGCAG | 1 cut(s) | 132 |
| Bsh1236I | CGCG | 1 cut(s) | 133 |
| BsiHKCI | CYCGRG | 1 cut(s) | 422 |
| BsmAI | GTCTC | 2 cut(s) | 203, 239 |
| BsoBI | CYCGRG | 1 cut(s) | 422 |
| Bsp1407I | TGTACA | 2 cut(s) | 251, 293 |
| Bsp143I | GATC | 2 cut(s) | 115, 160 |
| BspACI | CCGC | 2 cut(s) | 65, 382 |
| BspFNI | CGCG | 1 cut(s) | 133 |
| BspLI | GGNNCC | 1 cut(s) | 154 |
| BspMAI | CTGCAG | 2 cut(s) | 22, 59 |
| BsrDI | GCAATG | 1 cut(s) | 60 |
| BsrGI | TGTACA | 2 cut(s) | 251, 293 |
| BssMI | GATC | 2 cut(s) | 115, 160 |
| Bst4CI | ACNGT | 1 cut(s) | 448 |
| Bst6I | CTCTTC | 1 cut(s) | 206 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 26 |
| BstAUI | TGTACA | 2 cut(s) | 251, 293 |
| BstC8I | GCNNGC | 5 cut(s) | 70, 99, 282, 386, 456 |
| BstDEI | CTNAG | 1 cut(s) | 487 |
| BstF5I | GGATG | 2 cut(s) | 513, 541 |
| BstFNI | CGCG | 1 cut(s) | 133 |
| BstHHI | GCGC | 2 cut(s) | 31, 135 |
| BstKTI | GATC | 2 cut(s) | 118, 163 |
| BstMAI | GTCTC | 2 cut(s) | 203, 239 |
| BstMBI | GATC | 2 cut(s) | 115, 160 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 17, 20, 26, 57, 470, 479, 491, 500 |
| BstNSI | RCATGY | 2 cut(s) | 252, 284 |
| BstSFI | CTRYAG | 2 cut(s) | 18, 55 |
| BstUI | CGCG | 1 cut(s) | 133 |
| BstV1I | GCAGC | 5 cut(s) | 28, 32, 69, 106, 494 |
| BsuI | GTATCC | 1 cut(s) | 406 |
| BtrI | CACGTC | 1 cut(s) | 439 |
| BtsCI | GGATG | 2 cut(s) | 513, 541 |
| Cac8I | GCNNGC | 5 cut(s) | 70, 99, 282, 386, 456 |
| CfoI | GCGC | 2 cut(s) | 31, 135 |
| Csp6I | GTAC | 2 cut(s) | 252, 294 |
| CviAII | CATG | 2 cut(s) | 249, 281 |
| CviJI | RGCY | 9 cut(s) | 23, 226, 272, 351, 427, 458, 464, 485, 509 |
| CviKI_1 | RGCY | 9 cut(s) | 23, 226, 272, 351, 427, 458, 464, 485, 509 |
| CviQI | GTAC | 2 cut(s) | 252, 294 |
| DdeI | CTNAG | 1 cut(s) | 487 |
| DpnI | GATC | 2 cut(s) | 117, 162 |
| DpnII | GATC | 2 cut(s) | 115, 160 |
| Eam1104I | CTCTTC | 1 cut(s) | 206 |
| EarI | CTCTTC | 1 cut(s) | 206 |
| EciI | GGCGGA | 1 cut(s) | 371 |
| Eco32I | GATATC | 1 cut(s) | 379 |
| Eco88I | CYCGRG | 1 cut(s) | 422 |
| EcoRV | GATATC | 1 cut(s) | 379 |
| FaeI | CATG | 2 cut(s) | 252, 284 |
| FaiI | YATR | 8 cut(s) | 9, 196, 229, 250, 282, 298, 531, 533 |
| FatI | CATG | 2 cut(s) | 248, 280 |
| FauNDI | CATATG | 1 cut(s) | 531 |
| FbaI | TGATCA | 1 cut(s) | 160 |
| Fnu4HI | GCNGC | 7 cut(s) | 12, 21, 42, 58, 66, 95, 483 |
| FokI | GGATG | 1 cut(s) | 500 |
| Fsp4HI | GCNGC | 7 cut(s) | 12, 21, 42, 58, 66, 95, 483 |
| FspBI | CTAG | 3 cut(s) | 348, 429, 547 |
| FspI | TGCGCA | 1 cut(s) | 30 |
| GlaI | GCGC | 2 cut(s) | 30, 134 |
| GluI | GCNGC | 7 cut(s) | 12, 21, 42, 58, 66, 95, 483 |
| HhaI | GCGC | 2 cut(s) | 31, 135 |
| Hin1II | CATG | 2 cut(s) | 252, 284 |
| Hin6I | GCGC | 2 cut(s) | 29, 133 |
| HinP1I | GCGC | 2 cut(s) | 29, 133 |
| HindIII | AAGCTT | 1 cut(s) | 462 |
| HinfI | GANTC | 4 cut(s) | 235, 405, 418, 523 |
| Hpy166II | GTNNAC | 1 cut(s) | 254 |
| Hpy188I | TCNGA | 3 cut(s) | 160, 303, 355 |
| Hpy188III | TCNNGA | 3 cut(s) | 374, 422, 434 |
| Hpy8I | GTNNAC | 1 cut(s) | 254 |
| HpyCH4III | ACNGT | 1 cut(s) | 448 |
| HpyCH4IV | ACGT | 2 cut(s) | 141, 438 |
| HpyCH4V | TGCA | 4 cut(s) | 20, 57, 86, 113 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 17, 20, 26, 57, 470, 479, 491, 500 |
| HpyF3I | CTNAG | 1 cut(s) | 487 |
| HpySE526I | ACGT | 2 cut(s) | 141, 438 |
| Hsp92II | CATG | 2 cut(s) | 252, 284 |
| HspAI | GCGC | 2 cut(s) | 29, 133 |
| Ksp22I | TGATCA | 1 cut(s) | 160 |
| Kzo9I | GATC | 2 cut(s) | 115, 160 |
| LmnI | GCTCC | 1 cut(s) | 269 |
| LpnPI | CCDG | 8 cut(s) | 30, 47, 67, 96, 304, 326, 349, 398 |
| Lsp1109I | GCAGC | 5 cut(s) | 28, 32, 69, 106, 494 |
| LweI | GCATC | 1 cut(s) | 397 |
| MaeI | CTAG | 3 cut(s) | 348, 429, 547 |
| MaeII | ACGT | 2 cut(s) | 141, 438 |
| MaeIII | GTNAC | 1 cut(s) | 308 |
| MalI | GATC | 2 cut(s) | 117, 162 |
| MboI | GATC | 2 cut(s) | 115, 160 |
| MboII | GAAGA | 2 cut(s) | 166, 193 |
| MluCI | AATT | 2 cut(s) | 218, 320 |
| MlyI | GAGTC | 2 cut(s) | 244, 517 |
| MnlI | CCTC | 4 cut(s) | 166, 223, 256, 484 |
| MslI | CAYNNNNRTG | 4 cut(s) | 36, 108, 518, 534 |
| MvnI | CGCG | 1 cut(s) | 133 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 17, 20, 26, 57, 470, 479, 491, 500 |
| NdeI | CATATG | 1 cut(s) | 531 |
| NdeII | GATC | 2 cut(s) | 115, 160 |
| NlaIII | CATG | 2 cut(s) | 252, 284 |
| NlaIV | GGNNCC | 1 cut(s) | 154 |
| NsbI | TGCGCA | 1 cut(s) | 30 |
| NspI | RCATGY | 2 cut(s) | 252, 284 |
| OliI | CACNNNNGTG | 1 cut(s) | 36 |
| PaeI | GCATGC | 1 cut(s) | 284 |
| PaeR7I | CTCGAG | 1 cut(s) | 422 |
| PciI | ACATGT | 1 cut(s) | 248 |
| PfeI | GAWTC | 2 cut(s) | 405, 418 |
| PkrI | GCNGC | 7 cut(s) | 13, 22, 43, 59, 67, 96, 484 |
| PleI | GAGTC | 2 cut(s) | 243, 517 |
| PpsI | GAGTC | 2 cut(s) | 243, 517 |
| PscI | ACATGT | 1 cut(s) | 248 |
| PspN4I | GGNNCC | 1 cut(s) | 154 |
| PstI | CTGCAG | 2 cut(s) | 22, 59 |
| RsaI | GTAC | 2 cut(s) | 253, 295 |
| RsaNI | GTAC | 2 cut(s) | 252, 294 |
| RseI | CAYNNNNRTG | 4 cut(s) | 36, 108, 518, 534 |
| SatI | GCNGC | 7 cut(s) | 12, 21, 42, 58, 66, 95, 483 |
| Sau3AI | GATC | 2 cut(s) | 115, 160 |
| SchI | GAGTC | 2 cut(s) | 244, 517 |
| SfaNI | GCATC | 1 cut(s) | 397 |
| SfcI | CTRYAG | 2 cut(s) | 18, 55 |
| Sfr274I | CTCGAG | 1 cut(s) | 422 |
| SlaI | CTCGAG | 1 cut(s) | 422 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 36, 108, 518, 534 |
| SmlI | CTYRAG | 3 cut(s) | 392, 422, 459 |
| SmoI | CTYRAG | 3 cut(s) | 392, 422, 459 |
| SphI | GCATGC | 1 cut(s) | 284 |
| Sse9I | AATT | 2 cut(s) | 218, 320 |
| SsiI | CCGC | 2 cut(s) | 65, 382 |
| SspMI | CTAG | 3 cut(s) | 348, 429, 547 |
| TaaI | ACNGT | 1 cut(s) | 448 |
| TaiI | ACGT | 2 cut(s) | 144, 441 |
| TaqI | TCGA | 2 cut(s) | 261, 423 |
| TasI | AATT | 2 cut(s) | 218, 320 |
| TatI | WGTACW | 2 cut(s) | 251, 293 |
| TauI | GCSGC | 1 cut(s) | 68 |
| TfiI | GAWTC | 2 cut(s) | 405, 418 |
| TseI | GCWGC | 6 cut(s) | 11, 20, 41, 57, 94, 482 |
| TspDTI | ATGAA | 1 cut(s) | 179 |
| XapI | RAATTY | 1 cut(s) | 218 |
| XceI | RCATGY | 2 cut(s) | 252, 284 |
| XhoI | CTCGAG | 1 cut(s) | 422 |
| XspI | CTAG | 3 cut(s) | 348, 429, 547 |