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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 2 cut(s) | 374, 444 |
| AcsI | RAATTY | 2 cut(s) | 42, 251 |
| AfaI | GTAC | 1 cut(s) | 137 |
| AflIII | ACRYGT | 1 cut(s) | 24 |
| AgsI | TTSAA | 1 cut(s) | 47 |
| AjiI | CACGTC | 1 cut(s) | 25 |
| AjnI | CCWGG | 1 cut(s) | 18 |
| AluBI | AGCT | 3 cut(s) | 59, 385, 407 |
| AluI | AGCT | 3 cut(s) | 59, 385, 407 |
| Alw21I | GWGCWC | 1 cut(s) | 387 |
| Alw26I | GTCTC | 2 cut(s) | 181, 319 |
| AlwI | GGATC | 2 cut(s) | 374, 444 |
| Ama87I | CYCGRG | 1 cut(s) | 8 |
| ApeKI | GCWGC | 1 cut(s) | 68 |
| ApoI | RAATTY | 2 cut(s) | 42, 251 |
| AsuII | TTCGAA | 1 cut(s) | 183 |
| AvaI | CYCGRG | 1 cut(s) | 8 |
| BanII | GRGCYC | 1 cut(s) | 387 |
| BbsI | GAAGAC | 2 cut(s) | 162, 299 |
| Bbv12I | GWGCWC | 1 cut(s) | 387 |
| BbvI | GCAGC | 1 cut(s) | 80 |
| BccI | CCATC | 1 cut(s) | 104 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 338, 372 |
| BciT130I | CCWGG | 1 cut(s) | 20 |
| BcoDI | GTCTC | 2 cut(s) | 181, 319 |
| BfaI | CTAG | 1 cut(s) | 15 |
| BfmI | CTRYAG | 1 cut(s) | 357 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 77 |
| BisI | GCNGC | 1 cut(s) | 69 |
| BlsI | GCNGC | 1 cut(s) | 70 |
| Bme1390I | CCNGG | 1 cut(s) | 20 |
| BmeT110I | CYCGRG | 1 cut(s) | 8 |
| BmgBI | CACGTC | 1 cut(s) | 25 |
| BmrFI | CCNGG | 1 cut(s) | 20 |
| BmsI | GCATC | 1 cut(s) | 265 |
| BpiI | GAAGAC | 2 cut(s) | 162, 299 |
| BpmI | CTGGAG | 1 cut(s) | 116 |
| Bpu14I | TTCGAA | 1 cut(s) | 183 |
| Bsa29I | ATCGAT | 1 cut(s) | 348 |
| BsaI | GGTCTC | 1 cut(s) | 181 |
| BsaJI | CCNNGG | 1 cut(s) | 453 |
| Bse1I | ACTGG | 1 cut(s) | 133 |
| BseBI | CCWGG | 1 cut(s) | 20 |
| BseCI | ATCGAT | 1 cut(s) | 348 |
| BseDI | CCNNGG | 1 cut(s) | 453 |
| BseGI | GGATG | 3 cut(s) | 99, 127, 423 |
| BseNI | ACTGG | 1 cut(s) | 133 |
| BseXI | GCAGC | 1 cut(s) | 80 |
| BshVI | ATCGAT | 1 cut(s) | 348 |
| BsiHKAI | GWGCWC | 1 cut(s) | 387 |
| BsiHKCI | CYCGRG | 1 cut(s) | 8 |
| BsmAI | GTCTC | 2 cut(s) | 181, 319 |
| BsmBI | CGTCTC | 1 cut(s) | 319 |
| Bso31I | GGTCTC | 1 cut(s) | 181 |
| BsoBI | CYCGRG | 1 cut(s) | 8 |
| Bsp119I | TTCGAA | 1 cut(s) | 183 |
| Bsp1286I | GDGCHC | 1 cut(s) | 387 |
| Bsp143I | GATC | 3 cut(s) | 267, 366, 449 |
| BspDI | ATCGAT | 1 cut(s) | 348 |
| BspHI | TCATGA | 1 cut(s) | 379 |
| BspMAI | CTGCAG | 1 cut(s) | 361 |
| BspPI | GGATC | 2 cut(s) | 374, 444 |
| BspT104I | TTCGAA | 1 cut(s) | 183 |
| BspTNI | GGTCTC | 1 cut(s) | 181 |
| BsrI | ACTGG | 1 cut(s) | 133 |
| BssECI | CCNNGG | 1 cut(s) | 453 |
| BssMI | GATC | 3 cut(s) | 267, 366, 449 |
| Bst2UI | CCWGG | 1 cut(s) | 20 |
| Bst4CI | ACNGT | 1 cut(s) | 34 |
| BstBI | TTCGAA | 1 cut(s) | 183 |
| BstDEI | CTNAG | 1 cut(s) | 333 |
| BstDSI | CCRYGG | 1 cut(s) | 453 |
| BstF5I | GGATG | 3 cut(s) | 99, 127, 423 |
| BstKTI | GATC | 3 cut(s) | 270, 369, 452 |
| BstMAI | GTCTC | 2 cut(s) | 181, 319 |
| BstMBI | GATC | 3 cut(s) | 267, 366, 449 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 65, 77, 86 |
| BstNI | CCWGG | 1 cut(s) | 20 |
| BstSCI | CCNGG | 1 cut(s) | 18 |
| BstSFI | CTRYAG | 1 cut(s) | 357 |
| BstV1I | GCAGC | 1 cut(s) | 80 |
| BstV2I | GAAGAC | 2 cut(s) | 162, 299 |
| BstX2I | RGATCY | 1 cut(s) | 449 |
| BstYI | RGATCY | 1 cut(s) | 449 |
| Bsu15I | ATCGAT | 1 cut(s) | 348 |
| BsuTUI | ATCGAT | 1 cut(s) | 348 |
| BtgI | CCRYGG | 1 cut(s) | 453 |
| BtrI | CACGTC | 1 cut(s) | 25 |
| BtsCI | GGATG | 3 cut(s) | 99, 127, 423 |
| CciI | TCATGA | 1 cut(s) | 379 |
| ClaI | ATCGAT | 1 cut(s) | 348 |
| Csp6I | GTAC | 1 cut(s) | 136 |
| CviAII | CATG | 2 cut(s) | 380, 416 |
| CviJI | RGCY | 8 cut(s) | 13, 18, 59, 71, 95, 169, 385, 407 |
| CviKI_1 | RGCY | 8 cut(s) | 13, 18, 59, 71, 95, 169, 385, 407 |
| CviQI | GTAC | 1 cut(s) | 136 |
| DdeI | CTNAG | 1 cut(s) | 333 |
| DpnI | GATC | 3 cut(s) | 269, 368, 451 |
| DpnII | GATC | 3 cut(s) | 267, 366, 449 |
| Ecl136II | GAGCTC | 1 cut(s) | 385 |
| Eco24I | GRGCYC | 1 cut(s) | 387 |
| Eco31I | GGTCTC | 1 cut(s) | 181 |
| Eco53kI | GAGCTC | 1 cut(s) | 385 |
| Eco88I | CYCGRG | 1 cut(s) | 8 |
| EcoICRI | GAGCTC | 1 cut(s) | 385 |
| EcoRII | CCWGG | 1 cut(s) | 18 |
| EcoT38I | GRGCYC | 1 cut(s) | 387 |
| Esp3I | CGTCTC | 1 cut(s) | 319 |
| FaeI | CATG | 2 cut(s) | 383, 419 |
| FaiI | YATR | 9 cut(s) | 117, 119, 146, 272, 381, 398, 417, 441, 468 |
| FatI | CATG | 2 cut(s) | 379, 415 |
| FauNDI | CATATG | 1 cut(s) | 117 |
| Fnu4HI | GCNGC | 1 cut(s) | 69 |
| FokI | GGATG | 3 cut(s) | 86, 134, 410 |
| FriOI | GRGCYC | 1 cut(s) | 387 |
| Fsp4HI | GCNGC | 1 cut(s) | 69 |
| FspBI | CTAG | 1 cut(s) | 15 |
| GluI | GCNGC | 1 cut(s) | 69 |
| GsuI | CTGGAG | 1 cut(s) | 116 |
| Hin1II | CATG | 2 cut(s) | 383, 419 |
| HincII | GTYRAC | 1 cut(s) | 30 |
| HindII | GTYRAC | 1 cut(s) | 30 |
| HinfI | GANTC | 5 cut(s) | 4, 109, 125, 295, 476 |
| HpaI | GTTAAC | 1 cut(s) | 30 |
| Hpy166II | GTNNAC | 1 cut(s) | 30 |
| Hpy188III | TCNNGA | 5 cut(s) | 8, 209, 380, 447, 473 |
| Hpy8I | GTNNAC | 1 cut(s) | 30 |
| HpyAV | CCTTC | 2 cut(s) | 159, 316 |
| HpyCH4III | ACNGT | 1 cut(s) | 34 |
| HpyCH4IV | ACGT | 2 cut(s) | 24, 201 |
| HpyCH4V | TGCA | 2 cut(s) | 320, 359 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 65, 77, 86 |
| HpyF3I | CTNAG | 1 cut(s) | 333 |
| HpySE526I | ACGT | 2 cut(s) | 24, 201 |
| Hsp92II | CATG | 2 cut(s) | 383, 419 |
| KspAI | GTTAAC | 1 cut(s) | 30 |
| Kzo9I | GATC | 3 cut(s) | 267, 366, 449 |
| LmnI | GCTCC | 1 cut(s) | 135 |
| LpnPI | CCDG | 6 cut(s) | 5, 32, 62, 146, 175, 458 |
| Lsp1109I | GCAGC | 1 cut(s) | 80 |
| LweI | GCATC | 1 cut(s) | 265 |
| MaeI | CTAG | 1 cut(s) | 15 |
| MaeII | ACGT | 2 cut(s) | 24, 201 |
| MaeIII | GTNAC | 1 cut(s) | 352 |
| MalI | GATC | 3 cut(s) | 269, 368, 451 |
| MboI | GATC | 3 cut(s) | 267, 366, 449 |
| MboII | GAAGA | 5 cut(s) | 164, 167, 197, 304, 445 |
| MflI | RGATCY | 1 cut(s) | 449 |
| MhlI | GDGCHC | 1 cut(s) | 387 |
| MluCI | AATT | 4 cut(s) | 42, 251, 442, 481 |
| MlyI | GAGTC | 2 cut(s) | 103, 289 |
| MnlI | CCTC | 1 cut(s) | 31 |
| MseI | TTAA | 3 cut(s) | 29, 237, 245 |
| MslI | CAYNNNNRTG | 3 cut(s) | 104, 120, 428 |
| MspR9I | CCNGG | 1 cut(s) | 20 |
| MvaI | CCWGG | 1 cut(s) | 20 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 65, 77, 86 |
| NdeI | CATATG | 1 cut(s) | 117 |
| NdeII | GATC | 3 cut(s) | 267, 366, 449 |
| NlaIII | CATG | 2 cut(s) | 383, 419 |
| NspV | TTCGAA | 1 cut(s) | 183 |
| PaeR7I | CTCGAG | 1 cut(s) | 8 |
| PagI | TCATGA | 1 cut(s) | 379 |
| PfeI | GAWTC | 3 cut(s) | 4, 125, 476 |
| PflFI | GACNNNGTC | 1 cut(s) | 200 |
| PkrI | GCNGC | 1 cut(s) | 70 |
| PleI | GAGTC | 2 cut(s) | 103, 289 |
| PpsI | GAGTC | 2 cut(s) | 103, 289 |
| Psp124BI | GAGCTC | 1 cut(s) | 387 |
| Psp6I | CCWGG | 1 cut(s) | 18 |
| PspGI | CCWGG | 1 cut(s) | 18 |
| PstI | CTGCAG | 1 cut(s) | 361 |
| PsuI | RGATCY | 1 cut(s) | 449 |
| PsyI | GACNNNGTC | 1 cut(s) | 200 |
| RsaI | GTAC | 1 cut(s) | 137 |
| RsaNI | GTAC | 1 cut(s) | 136 |
| RseI | CAYNNNNRTG | 3 cut(s) | 104, 120, 428 |
| SacI | GAGCTC | 1 cut(s) | 387 |
| SaqAI | TTAA | 3 cut(s) | 29, 237, 245 |
| SatI | GCNGC | 1 cut(s) | 69 |
| Sau3AI | GATC | 3 cut(s) | 267, 366, 449 |
| SchI | GAGTC | 2 cut(s) | 103, 289 |
| ScrFI | CCNGG | 1 cut(s) | 20 |
| SduI | GDGCHC | 1 cut(s) | 387 |
| SetI | ASST | 7 cut(s) | 27, 61, 204, 308, 377, 387, 409 |
| SfaNI | GCATC | 1 cut(s) | 265 |
| SfcI | CTRYAG | 1 cut(s) | 357 |
| Sfr274I | CTCGAG | 1 cut(s) | 8 |
| SfuI | TTCGAA | 1 cut(s) | 183 |
| SlaI | CTCGAG | 1 cut(s) | 8 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 104, 120, 428 |
| SmlI | CTYRAG | 1 cut(s) | 8 |
| SmoI | CTYRAG | 1 cut(s) | 8 |
| Sse9I | AATT | 4 cut(s) | 42, 251, 442, 481 |
| SspMI | CTAG | 1 cut(s) | 15 |
| SstI | GAGCTC | 1 cut(s) | 387 |
| StyD4I | CCNGG | 1 cut(s) | 18 |
| TaaI | ACNGT | 1 cut(s) | 34 |
| TaiI | ACGT | 2 cut(s) | 27, 204 |
| TaqI | TCGA | 5 cut(s) | 9, 183, 221, 348, 446 |
| TasI | AATT | 4 cut(s) | 42, 251, 442, 481 |
| TfiI | GAWTC | 3 cut(s) | 4, 125, 476 |
| Tru1I | TTAA | 3 cut(s) | 29, 237, 245 |
| Tru9I | TTAA | 3 cut(s) | 29, 237, 245 |
| TseI | GCWGC | 1 cut(s) | 68 |
| TspDTI | ATGAA | 5 cut(s) | 161, 165, 263, 368, 413 |
| TspGWI | ACGGA | 2 cut(s) | 379, 442 |
| Tth111I | GACNNNGTC | 1 cut(s) | 200 |
| XapI | RAATTY | 2 cut(s) | 42, 251 |
| XhoI | CTCGAG | 1 cut(s) | 8 |
| XspI | CTAG | 1 cut(s) | 15 |