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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 447 |
| AccB1I | GGYRCC | 2 cut(s) | 468, 626 |
| AccBSI | CCGCTC | 1 cut(s) | 768 |
| AccII | CGCG | 1 cut(s) | 453 |
| AccIII | TCCGGA | 1 cut(s) | 433 |
| AciI | CCGC | 4 cut(s) | 145, 193, 768, 789 |
| AclWI | GGATC | 2 cut(s) | 335, 405 |
| AcsI | RAATTY | 1 cut(s) | 212 |
| AcyI | GRCGYC | 2 cut(s) | 469, 627 |
| AfaI | GTAC | 2 cut(s) | 32, 873 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 464, 718 |
| AflIII | ACRYGT | 1 cut(s) | 583 |
| AgsI | TTSAA | 2 cut(s) | 160, 664 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 72, 104 |
| AluBI | AGCT | 4 cut(s) | 141, 346, 356, 739 |
| AluI | AGCT | 4 cut(s) | 141, 346, 356, 739 |
| Alw26I | GTCTC | 3 cut(s) | 76, 782, 827 |
| AlwI | GGATC | 2 cut(s) | 335, 405 |
| Ama87I | CYCGRG | 1 cut(s) | 847 |
| Aor13HI | TCCGGA | 1 cut(s) | 433 |
| AoxI | GGCC | 1 cut(s) | 786 |
| ApoI | RAATTY | 1 cut(s) | 212 |
| AseI | ATTAAT | 1 cut(s) | 813 |
| AspLEI | GCGC | 3 cut(s) | 455, 471, 629 |
| AspS9I | GGNCC | 2 cut(s) | 515, 730 |
| AsuHPI | GGTGA | 1 cut(s) | 772 |
| AvaI | CYCGRG | 1 cut(s) | 847 |
| AvaII | GGWCC | 2 cut(s) | 515, 730 |
| BanI | GGYRCC | 2 cut(s) | 468, 626 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 484, 516 |
| BbsI | GAAGAC | 2 cut(s) | 57, 260 |
| BccI | CCATC | 3 cut(s) | 126, 280, 281 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 299, 333 |
| BciVI | GTATCC | 1 cut(s) | 490 |
| BcoDI | GTCTC | 3 cut(s) | 76, 782, 827 |
| BfaI | CTAG | 4 cut(s) | 122, 612, 740, 879 |
| BfmI | CTRYAG | 1 cut(s) | 318 |
| BfoI | RGCGCY | 2 cut(s) | 472, 630 |
| BfuI | GTATCC | 1 cut(s) | 490 |
| BisI | GCNGC | 2 cut(s) | 769, 789 |
| BlsI | GCNGC | 2 cut(s) | 770, 790 |
| Bme18I | GGWCC | 2 cut(s) | 515, 730 |
| BmeT110I | CYCGRG | 1 cut(s) | 847 |
| BmgT120I | GGNCC | 2 cut(s) | 515, 730 |
| BmiI | GGNNCC | 3 cut(s) | 470, 569, 628 |
| BmsI | GCATC | 1 cut(s) | 688 |
| BpiI | GAAGAC | 2 cut(s) | 57, 260 |
| BpmI | CTGGAG | 1 cut(s) | 11 |
| Bsa29I | ATCGAT | 1 cut(s) | 309 |
| BsaHI | GRCGYC | 2 cut(s) | 469, 627 |
| BsaI | GGTCTC | 1 cut(s) | 76 |
| BsaJI | CCNNGG | 3 cut(s) | 414, 783, 846 |
| BsaWI | WCCGGW | 1 cut(s) | 433 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 464, 718 |
| Bse1I | ACTGG | 1 cut(s) | 28 |
| BseAI | TCCGGA | 1 cut(s) | 433 |
| BseCI | ATCGAT | 1 cut(s) | 309 |
| BseDI | CCNNGG | 3 cut(s) | 414, 783, 846 |
| BseGI | GGATG | 3 cut(s) | 384, 512, 864 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 464, 718 |
| BseMII | CTCAG | 3 cut(s) | 678, 832, 838 |
| BseNI | ACTGG | 1 cut(s) | 28 |
| Bsh1236I | CGCG | 1 cut(s) | 453 |
| Bsh1285I | CGRYCG | 1 cut(s) | 775 |
| BshFI | GGCC | 1 cut(s) | 788 |
| BshNI | GGYRCC | 2 cut(s) | 468, 626 |
| BshVI | ATCGAT | 1 cut(s) | 309 |
| BsiEI | CGRYCG | 1 cut(s) | 775 |
| BsiHKCI | CYCGRG | 1 cut(s) | 847 |
| BsiSI | CCGG | 1 cut(s) | 434 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 464, 718 |
| BsmAI | GTCTC | 3 cut(s) | 76, 782, 827 |
| BsmBI | CGTCTC | 1 cut(s) | 782 |
| BsnI | GGCC | 1 cut(s) | 788 |
| Bso31I | GGTCTC | 1 cut(s) | 76 |
| BsoBI | CYCGRG | 1 cut(s) | 847 |
| Bsp13I | TCCGGA | 1 cut(s) | 433 |
| Bsp1407I | TGTACA | 1 cut(s) | 871 |
| Bsp143I | GATC | 4 cut(s) | 228, 327, 410, 772 |
| BspACI | CCGC | 4 cut(s) | 145, 193, 768, 789 |
| BspANI | GGCC | 1 cut(s) | 788 |
| BspCNI | CTCAG | 3 cut(s) | 679, 831, 837 |
| BspDI | ATCGAT | 1 cut(s) | 309 |
| BspEI | TCCGGA | 1 cut(s) | 433 |
| BspFNI | CGCG | 1 cut(s) | 453 |
| BspHI | TCATGA | 1 cut(s) | 340 |
| BspLI | GGNNCC | 3 cut(s) | 470, 569, 628 |
| BspMAI | CTGCAG | 1 cut(s) | 322 |
| BspPI | GGATC | 2 cut(s) | 335, 405 |
| BspT107I | GGYRCC | 2 cut(s) | 468, 626 |
| BspTNI | GGTCTC | 1 cut(s) | 76 |
| BsrBI | CCGCTC | 1 cut(s) | 768 |
| BsrGI | TGTACA | 1 cut(s) | 871 |
| BsrI | ACTGG | 1 cut(s) | 28 |
| BssECI | CCNNGG | 3 cut(s) | 414, 783, 846 |
| BssMI | GATC | 4 cut(s) | 228, 327, 410, 772 |
| BssNI | GRCGYC | 2 cut(s) | 469, 627 |
| BssT1I | CCWWGG | 1 cut(s) | 783 |
| Bst6I | CTCTTC | 1 cut(s) | 568 |
| BstACI | GRCGYC | 2 cut(s) | 469, 627 |
| BstAUI | TGTACA | 1 cut(s) | 871 |
| BstDEI | CTNAG | 6 cut(s) | 294, 459, 639, 687, 818, 824 |
| BstDSI | CCRYGG | 1 cut(s) | 414 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 462 |
| BstF5I | GGATG | 3 cut(s) | 384, 512, 864 |
| BstFNI | CGCG | 1 cut(s) | 453 |
| BstH2I | RGCGCY | 2 cut(s) | 472, 630 |
| BstHHI | GCGC | 3 cut(s) | 455, 471, 629 |
| BstKTI | GATC | 4 cut(s) | 231, 330, 413, 775 |
| BstMAI | GTCTC | 3 cut(s) | 76, 782, 827 |
| BstMBI | GATC | 4 cut(s) | 228, 327, 410, 772 |
| BstMCI | CGRYCG | 1 cut(s) | 775 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 665, 768 |
| BstSFI | CTRYAG | 1 cut(s) | 318 |
| BstUI | CGCG | 1 cut(s) | 453 |
| BstV2I | GAAGAC | 2 cut(s) | 57, 260 |
| BstX2I | RGATCY | 1 cut(s) | 410 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 623 |
| BstYI | RGATCY | 1 cut(s) | 410 |
| Bsu15I | ATCGAT | 1 cut(s) | 309 |
| BsuI | GTATCC | 1 cut(s) | 490 |
| BsuRI | GGCC | 1 cut(s) | 788 |
| BsuTUI | ATCGAT | 1 cut(s) | 309 |
| BtgI | CCRYGG | 1 cut(s) | 414 |
| BtsCI | GGATG | 3 cut(s) | 384, 512, 864 |
| CciI | TCATGA | 1 cut(s) | 340 |
| CfoI | GCGC | 3 cut(s) | 455, 471, 629 |
| Cfr13I | GGNCC | 2 cut(s) | 515, 730 |
| ClaI | ATCGAT | 1 cut(s) | 309 |
| CseI | GACGC | 2 cut(s) | 665, 690 |
| Csp6I | GTAC | 2 cut(s) | 31, 872 |
| CviAII | CATG | 4 cut(s) | 341, 377, 617, 715 |
| CviJI | RGCY | 8 cut(s) | 64, 141, 346, 356, 615, 739, 788, 853 |
| CviKI_1 | RGCY | 8 cut(s) | 64, 141, 346, 356, 615, 739, 788, 853 |
| CviQI | GTAC | 2 cut(s) | 31, 872 |
| DdeI | CTNAG | 6 cut(s) | 294, 459, 639, 687, 818, 824 |
| DinI | GGCGCC | 2 cut(s) | 470, 628 |
| DpnI | GATC | 4 cut(s) | 230, 329, 412, 774 |
| DpnII | GATC | 4 cut(s) | 228, 327, 410, 772 |
| Eam1104I | CTCTTC | 1 cut(s) | 568 |
| EarI | CTCTTC | 1 cut(s) | 568 |
| Eco130I | CCWWGG | 1 cut(s) | 783 |
| Eco31I | GGTCTC | 1 cut(s) | 76 |
| Eco47I | GGWCC | 2 cut(s) | 515, 730 |
| Eco88I | CYCGRG | 1 cut(s) | 847 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 462 |
| EcoRI | GAATTC | 1 cut(s) | 212 |
| EcoT14I | CCWWGG | 1 cut(s) | 783 |
| EgeI | GGCGCC | 2 cut(s) | 470, 628 |
| EheI | GGCGCC | 2 cut(s) | 470, 628 |
| ErhI | CCWWGG | 1 cut(s) | 783 |
| Esp3I | CGTCTC | 1 cut(s) | 782 |
| FaeI | CATG | 4 cut(s) | 344, 380, 620, 718 |
| FatI | CATG | 4 cut(s) | 340, 376, 616, 714 |
| FauNDI | CATATG | 1 cut(s) | 12 |
| Fnu4HI | GCNGC | 2 cut(s) | 769, 789 |
| FokI | GGATG | 3 cut(s) | 371, 519, 851 |
| Fsp4HI | GCNGC | 2 cut(s) | 769, 789 |
| FspBI | CTAG | 4 cut(s) | 122, 612, 740, 879 |
| GlaI | GCGC | 3 cut(s) | 454, 470, 628 |
| GluI | GCNGC | 2 cut(s) | 769, 789 |
| GsuI | CTGGAG | 1 cut(s) | 11 |
| HaeII | RGCGCY | 2 cut(s) | 472, 630 |
| HaeIII | GGCC | 1 cut(s) | 788 |
| HapII | CCGG | 1 cut(s) | 434 |
| HgaI | GACGC | 2 cut(s) | 665, 690 |
| HhaI | GCGC | 3 cut(s) | 455, 471, 629 |
| Hin1I | GRCGYC | 2 cut(s) | 469, 627 |
| Hin1II | CATG | 4 cut(s) | 344, 380, 620, 718 |
| Hin6I | GCGC | 3 cut(s) | 453, 469, 627 |
| HinP1I | GCGC | 3 cut(s) | 453, 469, 627 |
| HincII | GTYRAC | 1 cut(s) | 581 |
| HindII | GTYRAC | 1 cut(s) | 581 |
| HinfI | GANTC | 8 cut(s) | 4, 20, 104, 256, 306, 437, 643, 828 |
| HpaII | CCGG | 1 cut(s) | 434 |
| HphI | GGTGA | 1 cut(s) | 772 |
| Hpy166II | GTNNAC | 1 cut(s) | 581 |
| Hpy188I | TCNGA | 4 cut(s) | 184, 688, 706, 827 |
| Hpy188III | TCNNGA | 8 cut(s) | 116, 170, 341, 408, 434, 504, 733, 879 |
| Hpy8I | GTNNAC | 1 cut(s) | 581 |
| Hpy99I | CGWCG | 3 cut(s) | 244, 706, 761 |
| HpyAV | CCTTC | 3 cut(s) | 54, 277, 533 |
| HpyCH4IV | ACGT | 3 cut(s) | 96, 242, 583 |
| HpyCH4V | TGCA | 1 cut(s) | 320 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 665, 768 |
| HpyF3I | CTNAG | 6 cut(s) | 294, 459, 639, 687, 818, 824 |
| HpySE526I | ACGT | 3 cut(s) | 96, 242, 583 |
| Hsp92I | GRCGYC | 2 cut(s) | 469, 627 |
| Hsp92II | CATG | 4 cut(s) | 344, 380, 620, 718 |
| HspAI | GCGC | 3 cut(s) | 453, 469, 627 |
| KasI | GGCGCC | 2 cut(s) | 468, 626 |
| Kpn2I | TCCGGA | 1 cut(s) | 433 |
| Kzo9I | GATC | 4 cut(s) | 228, 327, 410, 772 |
| LmnI | GCTCC | 2 cut(s) | 30, 353 |
| LweI | GCATC | 1 cut(s) | 688 |
| MaeI | CTAG | 4 cut(s) | 122, 612, 740, 879 |
| MaeII | ACGT | 3 cut(s) | 96, 242, 583 |
| MaeIII | GTNAC | 3 cut(s) | 101, 313, 542 |
| MalI | GATC | 4 cut(s) | 230, 329, 412, 774 |
| MbiI | CCGCTC | 1 cut(s) | 768 |
| MboI | GATC | 4 cut(s) | 228, 327, 410, 772 |
| MboII | GAAGA | 6 cut(s) | 59, 62, 92, 265, 406, 585 |
| MflI | RGATCY | 1 cut(s) | 410 |
| MluCI | AATT | 5 cut(s) | 87, 212, 403, 442, 888 |
| Mly113I | GGCGCC | 2 cut(s) | 469, 627 |
| MlyI | GAGTC | 4 cut(s) | 98, 250, 652, 822 |
| MmeI | TCCRAC | 2 cut(s) | 331, 684 |
| MnlI | CCTC | 8 cut(s) | 569, 589, 593, 619, 681, 711, 755, 856 |
| MroI | TCCGGA | 1 cut(s) | 433 |
| MseI | TTAA | 3 cut(s) | 198, 206, 813 |
| MslI | CAYNNNNRTG | 4 cut(s) | 15, 389, 621, 651 |
| MspI | CCGG | 1 cut(s) | 434 |
| MvnI | CGCG | 1 cut(s) | 453 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 665, 768 |
| NarI | GGCGCC | 2 cut(s) | 469, 627 |
| NdeI | CATATG | 1 cut(s) | 12 |
| NdeII | GATC | 4 cut(s) | 228, 327, 410, 772 |
| NlaIII | CATG | 4 cut(s) | 344, 380, 620, 718 |
| NlaIV | GGNNCC | 3 cut(s) | 470, 569, 628 |
| NmuCI | GTSAC | 1 cut(s) | 101 |
| PagI | TCATGA | 1 cut(s) | 340 |
| PfeI | GAWTC | 3 cut(s) | 20, 306, 437 |
| PkrI | GCNGC | 2 cut(s) | 770, 790 |
| Ple19I | CGATCG | 1 cut(s) | 775 |
| PleI | GAGTC | 4 cut(s) | 98, 250, 651, 822 |
| PluTI | GGCGCC | 2 cut(s) | 472, 630 |
| PpsI | GAGTC | 4 cut(s) | 98, 250, 651, 822 |
| PshBI | ATTAAT | 1 cut(s) | 813 |
| PsiI | TTATAA | 1 cut(s) | 447 |
| PspN4I | GGNNCC | 3 cut(s) | 470, 569, 628 |
| PspPI | GGNCC | 2 cut(s) | 515, 730 |
| PstI | CTGCAG | 1 cut(s) | 322 |
| PsuI | RGATCY | 1 cut(s) | 410 |
| PvuI | CGATCG | 1 cut(s) | 775 |
| RsaI | GTAC | 2 cut(s) | 32, 873 |
| RsaNI | GTAC | 2 cut(s) | 31, 872 |
| RseI | CAYNNNNRTG | 4 cut(s) | 15, 389, 621, 651 |
| SaqAI | TTAA | 3 cut(s) | 198, 206, 813 |
| SatI | GCNGC | 2 cut(s) | 769, 789 |
| Sau3AI | GATC | 4 cut(s) | 228, 327, 410, 772 |
| Sau96I | GGNCC | 2 cut(s) | 515, 730 |
| SchI | GAGTC | 4 cut(s) | 98, 250, 652, 822 |
| SfaNI | GCATC | 1 cut(s) | 688 |
| SfcI | CTRYAG | 1 cut(s) | 318 |
| SfoI | GGCGCC | 2 cut(s) | 470, 628 |
| SinI | GGWCC | 2 cut(s) | 515, 730 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 15, 389, 621, 651 |
| Sse9I | AATT | 5 cut(s) | 87, 212, 403, 442, 888 |
| SsiI | CCGC | 4 cut(s) | 145, 193, 768, 789 |
| SspDI | GGCGCC | 2 cut(s) | 468, 626 |
| SspMI | CTAG | 4 cut(s) | 122, 612, 740, 879 |
| StyI | CCWWGG | 1 cut(s) | 783 |
| TaiI | ACGT | 3 cut(s) | 99, 245, 586 |
| TaqI | TCGA | 4 cut(s) | 78, 304, 309, 407 |
| TasI | AATT | 5 cut(s) | 87, 212, 403, 442, 888 |
| TatI | WGTACW | 1 cut(s) | 871 |
| TauI | GCSGC | 2 cut(s) | 771, 791 |
| TfiI | GAWTC | 3 cut(s) | 20, 306, 437 |
| Tru1I | TTAA | 3 cut(s) | 198, 206, 813 |
| Tru9I | TTAA | 3 cut(s) | 198, 206, 813 |
| TseFI | GTSAC | 1 cut(s) | 101 |
| Tsp45I | GTSAC | 1 cut(s) | 101 |
| TspDTI | ATGAA | 8 cut(s) | 29, 56, 60, 329, 374, 407, 695, 813 |
| TspGWI | ACGGA | 5 cut(s) | 89, 340, 403, 580, 745 |
| VpaK11BI | GGWCC | 2 cut(s) | 515, 730 |
| VspI | ATTAAT | 1 cut(s) | 813 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 462 |
| XapI | RAATTY | 1 cut(s) | 212 |
| XbaI | TCTAGA | 1 cut(s) | 878 |
| XspI | CTAG | 4 cut(s) | 122, 612, 740, 879 |