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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 140, 914 |
| AciI | CCGC | 7 cut(s) | 4, 132, 358, 459, 640, 768, 835 |
| AclWI | GGATC | 1 cut(s) | 829 |
| AcsI | RAATTY | 1 cut(s) | 707 |
| AfaI | GTAC | 2 cut(s) | 417, 527 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 198 |
| AgsI | TTSAA | 3 cut(s) | 655, 679, 952 |
| AjnI | CCWGG | 2 cut(s) | 384, 408 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 503, 535 |
| AluBI | AGCT | 3 cut(s) | 229, 261, 956 |
| AluI | AGCT | 3 cut(s) | 229, 261, 956 |
| Alw21I | GWGCWC | 1 cut(s) | 213 |
| Alw26I | GTCTC | 2 cut(s) | 175, 571 |
| AlwI | GGATC | 1 cut(s) | 829 |
| AoxI | GGCC | 6 cut(s) | 6, 25, 41, 74, 80, 372 |
| ApaI | GGGCCC | 1 cut(s) | 10 |
| ApoI | RAATTY | 1 cut(s) | 707 |
| AspA2I | CCTAGG | 1 cut(s) | 77 |
| AspS9I | GGNCC | 3 cut(s) | 6, 7, 41 |
| AvrII | CCTAGG | 1 cut(s) | 77 |
| AxyI | CCTNAGG | 1 cut(s) | 136 |
| BaeGI | GKGCMC | 1 cut(s) | 10 |
| BanI | GGYRCC | 2 cut(s) | 140, 914 |
| BanII | GRGCYC | 1 cut(s) | 10 |
| BbsI | GAAGAC | 2 cut(s) | 552, 755 |
| Bbv12I | GWGCWC | 1 cut(s) | 213 |
| BccI | CCATC | 3 cut(s) | 371, 621, 942 |
| BceAI | ACGGC | 1 cut(s) | 470 |
| BciT130I | CCWGG | 2 cut(s) | 386, 410 |
| BciVI | GTATCC | 1 cut(s) | 382 |
| BclI | TGATCA | 1 cut(s) | 93 |
| BcoDI | GTCTC | 2 cut(s) | 175, 571 |
| BfaI | CTAG | 5 cut(s) | 78, 398, 405, 552, 617 |
| BfuI | GTATCC | 1 cut(s) | 382 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 467 |
| BglII | AGATCT | 2 cut(s) | 237, 269 |
| BisI | GCNGC | 2 cut(s) | 132, 459 |
| BlnI | CCTAGG | 1 cut(s) | 77 |
| BlsI | GCNGC | 2 cut(s) | 133, 460 |
| Bme1390I | CCNGG | 2 cut(s) | 386, 410 |
| BmgT120I | GGNCC | 3 cut(s) | 6, 7, 41 |
| BmiI | GGNNCC | 4 cut(s) | 8, 142, 857, 916 |
| BmrFI | CCNGG | 2 cut(s) | 386, 410 |
| BmrI | ACTGGG | 1 cut(s) | 48 |
| BmsI | GCATC | 1 cut(s) | 373 |
| BmuI | ACTGGG | 1 cut(s) | 48 |
| BpiI | GAAGAC | 2 cut(s) | 552, 755 |
| BpuEI | CTTGAG | 1 cut(s) | 353 |
| BsaI | GGTCTC | 2 cut(s) | 175, 571 |
| BsaJI | CCNNGG | 1 cut(s) | 77 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 198 |
| Bse1I | ACTGG | 3 cut(s) | 43, 328, 523 |
| Bse21I | CCTNAGG | 1 cut(s) | 136 |
| BseBI | CCWGG | 2 cut(s) | 386, 410 |
| BseDI | CCNNGG | 1 cut(s) | 77 |
| BseGI | GGATG | 2 cut(s) | 489, 517 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 198 |
| BseMII | CTCAG | 2 cut(s) | 43, 150 |
| BseNI | ACTGG | 3 cut(s) | 43, 328, 523 |
| BseRI | GAGGAG | 1 cut(s) | 948 |
| BseSI | GKGCMC | 1 cut(s) | 10 |
| BshFI | GGCC | 6 cut(s) | 8, 27, 43, 76, 82, 374 |
| BshNI | GGYRCC | 2 cut(s) | 140, 914 |
| BsiHKAI | GWGCWC | 1 cut(s) | 213 |
| BsiSI | CCGG | 1 cut(s) | 154 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 198 |
| BsmAI | GTCTC | 2 cut(s) | 175, 571 |
| BsnI | GGCC | 6 cut(s) | 8, 27, 43, 76, 82, 374 |
| Bso31I | GGTCTC | 2 cut(s) | 175, 571 |
| Bsp120I | GGGCCC | 1 cut(s) | 6 |
| Bsp1286I | GDGCHC | 2 cut(s) | 10, 213 |
| Bsp143I | GATC | 6 cut(s) | 93, 126, 237, 269, 723, 821 |
| BspACI | CCGC | 7 cut(s) | 4, 132, 358, 459, 640, 768, 835 |
| BspANI | GGCC | 6 cut(s) | 8, 27, 43, 76, 82, 374 |
| BspCNI | CTCAG | 2 cut(s) | 42, 149 |
| BspLI | GGNNCC | 4 cut(s) | 8, 142, 857, 916 |
| BspPI | GGATC | 1 cut(s) | 829 |
| BspT107I | GGYRCC | 2 cut(s) | 140, 914 |
| BspTNI | GGTCTC | 2 cut(s) | 175, 571 |
| BsrI | ACTGG | 3 cut(s) | 43, 328, 523 |
| BssECI | CCNNGG | 1 cut(s) | 77 |
| BssMI | GATC | 6 cut(s) | 93, 126, 237, 269, 723, 821 |
| BssT1I | CCWWGG | 1 cut(s) | 77 |
| Bst2UI | CCWGG | 2 cut(s) | 386, 410 |
| Bst4CI | ACNGT | 2 cut(s) | 198, 647 |
| Bst6I | CTCTTC | 2 cut(s) | 57, 856 |
| BstC8I | GCNNGC | 2 cut(s) | 6, 362 |
| BstDEI | CTNAG | 6 cut(s) | 29, 136, 248, 280, 463, 927 |
| BstEII | GGTNACC | 1 cut(s) | 830 |
| BstF5I | GGATG | 2 cut(s) | 489, 517 |
| BstKTI | GATC | 6 cut(s) | 96, 129, 240, 272, 726, 824 |
| BstMAI | GTCTC | 2 cut(s) | 175, 571 |
| BstMBI | GATC | 6 cut(s) | 93, 126, 237, 269, 723, 821 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 455, 467, 767, 953 |
| BstNI | CCWGG | 2 cut(s) | 386, 410 |
| BstPI | GGTNACC | 1 cut(s) | 830 |
| BstSCI | CCNGG | 2 cut(s) | 384, 408 |
| BstSLI | GKGCMC | 1 cut(s) | 10 |
| BstV2I | GAAGAC | 2 cut(s) | 552, 755 |
| BstX2I | RGATCY | 2 cut(s) | 237, 269 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 911 |
| BstYI | RGATCY | 2 cut(s) | 237, 269 |
| Bsu36I | CCTNAGG | 1 cut(s) | 136 |
| BsuI | GTATCC | 1 cut(s) | 382 |
| BsuRI | GGCC | 6 cut(s) | 8, 27, 43, 76, 82, 374 |
| BtsCI | GGATG | 2 cut(s) | 489, 517 |
| BtsIMutI | CAGTG | 1 cut(s) | 37 |
| Cac8I | GCNNGC | 2 cut(s) | 6, 362 |
| Cfr13I | GGNCC | 3 cut(s) | 6, 7, 41 |
| CseI | GACGC | 1 cut(s) | 953 |
| Csp6I | GTAC | 2 cut(s) | 416, 526 |
| CviAII | CATG | 1 cut(s) | 905 |
| CviQI | GTAC | 2 cut(s) | 416, 526 |
| DdeI | CTNAG | 6 cut(s) | 29, 136, 248, 280, 463, 927 |
| DpnI | GATC | 6 cut(s) | 95, 128, 239, 271, 725, 823 |
| DpnII | GATC | 6 cut(s) | 93, 126, 237, 269, 723, 821 |
| DraI | TTTAAA | 1 cut(s) | 165 |
| Eam1104I | CTCTTC | 2 cut(s) | 57, 856 |
| EarI | CTCTTC | 2 cut(s) | 57, 856 |
| EciI | GGCGGA | 1 cut(s) | 347 |
| Eco130I | CCWWGG | 1 cut(s) | 77 |
| Eco147I | AGGCCT | 2 cut(s) | 27, 76 |
| Eco24I | GRGCYC | 1 cut(s) | 10 |
| Eco31I | GGTCTC | 2 cut(s) | 175, 571 |
| Eco32I | GATATC | 1 cut(s) | 335 |
| Eco81I | CCTNAGG | 1 cut(s) | 136 |
| Eco91I | GGTNACC | 1 cut(s) | 830 |
| EcoO65I | GGTNACC | 1 cut(s) | 830 |
| EcoRII | CCWGG | 2 cut(s) | 384, 408 |
| EcoRV | GATATC | 1 cut(s) | 335 |
| EcoT14I | CCWWGG | 1 cut(s) | 77 |
| EcoT38I | GRGCYC | 1 cut(s) | 10 |
| ErhI | CCWWGG | 1 cut(s) | 77 |
| FaeI | CATG | 1 cut(s) | 908 |
| FaiI | YATR | 7 cut(s) | 147, 507, 509, 536, 633, 737, 906 |
| FatI | CATG | 1 cut(s) | 904 |
| FauI | CCCGC | 1 cut(s) | 775 |
| FauNDI | CATATG | 1 cut(s) | 507 |
| FbaI | TGATCA | 1 cut(s) | 93 |
| Fnu4HI | GCNGC | 2 cut(s) | 132, 459 |
| FokI | GGATG | 2 cut(s) | 476, 524 |
| FriOI | GRGCYC | 1 cut(s) | 10 |
| Fsp4HI | GCNGC | 2 cut(s) | 132, 459 |
| FspBI | CTAG | 5 cut(s) | 78, 398, 405, 552, 617 |
| GluI | GCNGC | 2 cut(s) | 132, 459 |
| HaeIII | GGCC | 6 cut(s) | 8, 27, 43, 76, 82, 374 |
| HapII | CCGG | 1 cut(s) | 154 |
| HgaI | GACGC | 1 cut(s) | 953 |
| Hin1II | CATG | 1 cut(s) | 908 |
| HincII | GTYRAC | 1 cut(s) | 869 |
| HindII | GTYRAC | 1 cut(s) | 869 |
| HinfI | GANTC | 6 cut(s) | 381, 394, 499, 515, 751, 800 |
| HpaII | CCGG | 1 cut(s) | 154 |
| Hpy166II | GTNNAC | 1 cut(s) | 869 |
| Hpy188I | TCNGA | 3 cut(s) | 116, 126, 901 |
| Hpy188III | TCNNGA | 3 cut(s) | 330, 398, 611 |
| Hpy8I | GTNNAC | 1 cut(s) | 869 |
| HpyAV | CCTTC | 2 cut(s) | 549, 772 |
| HpyCH4III | ACNGT | 2 cut(s) | 198, 647 |
| HpyCH4IV | ACGT | 3 cut(s) | 414, 782, 871 |
| HpyCH4V | TGCA | 2 cut(s) | 776, 814 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 455, 467, 767, 953 |
| HpyF3I | CTNAG | 6 cut(s) | 29, 136, 248, 280, 463, 927 |
| HpySE526I | ACGT | 3 cut(s) | 414, 782, 871 |
| Hsp92II | CATG | 1 cut(s) | 908 |
| Ksp22I | TGATCA | 1 cut(s) | 93 |
| Kzo9I | GATC | 6 cut(s) | 93, 126, 237, 269, 723, 821 |
| LmnI | GCTCC | 3 cut(s) | 226, 258, 961 |
| LweI | GCATC | 1 cut(s) | 373 |
| MaeI | CTAG | 5 cut(s) | 78, 398, 405, 552, 617 |
| MaeII | ACGT | 3 cut(s) | 414, 782, 871 |
| MaeIII | GTNAC | 3 cut(s) | 34, 596, 830 |
| MalI | GATC | 6 cut(s) | 95, 128, 239, 271, 725, 823 |
| MboI | GATC | 6 cut(s) | 93, 126, 237, 269, 723, 821 |
| MboII | GAAGA | 7 cut(s) | 25, 74, 554, 557, 587, 760, 873 |
| MfeI | CAATTG | 2 cut(s) | 89, 311 |
| MflI | RGATCY | 2 cut(s) | 237, 269 |
| MhlI | GDGCHC | 2 cut(s) | 10, 213 |
| MluCI | AATT | 4 cut(s) | 89, 296, 311, 707 |
| MlyI | GAGTC | 2 cut(s) | 493, 745 |
| MmeI | TCCRAC | 1 cut(s) | 139 |
| MseI | TTAA | 3 cut(s) | 164, 693, 701 |
| MslI | CAYNNNNRTG | 4 cut(s) | 494, 510, 909, 939 |
| MspI | CCGG | 1 cut(s) | 154 |
| MspR9I | CCNGG | 2 cut(s) | 386, 410 |
| MunI | CAATTG | 2 cut(s) | 89, 311 |
| MvaI | CCWGG | 2 cut(s) | 386, 410 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 455, 467, 767, 953 |
| NdeI | CATATG | 1 cut(s) | 507 |
| NdeII | GATC | 6 cut(s) | 93, 126, 237, 269, 723, 821 |
| NlaIII | CATG | 1 cut(s) | 908 |
| NlaIV | GGNNCC | 4 cut(s) | 8, 142, 857, 916 |
| NmuCI | GTSAC | 2 cut(s) | 34, 596 |
| PceI | AGGCCT | 2 cut(s) | 27, 76 |
| PfeI | GAWTC | 4 cut(s) | 381, 394, 515, 800 |
| PfoI | TCCNGGA | 1 cut(s) | 384 |
| PkrI | GCNGC | 2 cut(s) | 133, 460 |
| PleI | GAGTC | 2 cut(s) | 493, 745 |
| PpsI | GAGTC | 2 cut(s) | 493, 745 |
| Psp6I | CCWGG | 2 cut(s) | 384, 408 |
| PspEI | GGTNACC | 1 cut(s) | 830 |
| PspGI | CCWGG | 2 cut(s) | 384, 408 |
| PspN4I | GGNNCC | 4 cut(s) | 8, 142, 857, 916 |
| PspOMI | GGGCCC | 1 cut(s) | 6 |
| PspPI | GGNCC | 3 cut(s) | 6, 7, 41 |
| PsuI | RGATCY | 2 cut(s) | 237, 269 |
| RsaI | GTAC | 2 cut(s) | 417, 527 |
| RsaNI | GTAC | 2 cut(s) | 416, 526 |
| RseI | CAYNNNNRTG | 4 cut(s) | 494, 510, 909, 939 |
| SaqAI | TTAA | 3 cut(s) | 164, 693, 701 |
| SatI | GCNGC | 2 cut(s) | 132, 459 |
| Sau3AI | GATC | 6 cut(s) | 93, 126, 237, 269, 723, 821 |
| Sau96I | GGNCC | 3 cut(s) | 6, 7, 41 |
| SchI | GAGTC | 2 cut(s) | 493, 745 |
| ScrFI | CCNGG | 2 cut(s) | 386, 410 |
| SduI | GDGCHC | 2 cut(s) | 10, 213 |
| SfaNI | GCATC | 1 cut(s) | 373 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 494, 510, 909, 939 |
| SmlI | CTYRAG | 1 cut(s) | 368 |
| SmoI | CTYRAG | 1 cut(s) | 368 |
| Sse9I | AATT | 4 cut(s) | 89, 296, 311, 707 |
| SseBI | AGGCCT | 2 cut(s) | 27, 76 |
| SsiI | CCGC | 7 cut(s) | 4, 132, 358, 459, 640, 768, 835 |
| SspMI | CTAG | 5 cut(s) | 78, 398, 405, 552, 617 |
| StuI | AGGCCT | 2 cut(s) | 27, 76 |
| StyD4I | CCNGG | 2 cut(s) | 384, 408 |
| StyI | CCWWGG | 1 cut(s) | 77 |
| TaaI | ACNGT | 2 cut(s) | 198, 647 |
| TaiI | ACGT | 3 cut(s) | 417, 785, 874 |
| TaqI | TCGA | 1 cut(s) | 573 |
| TasI | AATT | 4 cut(s) | 89, 296, 311, 707 |
| TauI | GCSGC | 2 cut(s) | 134, 461 |
| TfiI | GAWTC | 4 cut(s) | 381, 394, 515, 800 |
| Tru1I | TTAA | 3 cut(s) | 164, 693, 701 |
| Tru9I | TTAA | 3 cut(s) | 164, 693, 701 |
| TscAI | CASTG | 1 cut(s) | 37 |
| TseFI | GTSAC | 2 cut(s) | 34, 596 |
| Tsp45I | GTSAC | 2 cut(s) | 34, 596 |
| TspDTI | ATGAA | 3 cut(s) | 551, 555, 719 |
| TspGWI | ACGGA | 2 cut(s) | 584, 834 |
| TspRI | CASTG | 1 cut(s) | 37 |
| XapI | RAATTY | 1 cut(s) | 707 |
| XbaI | TCTAGA | 1 cut(s) | 397 |
| XmaJI | CCTAGG | 1 cut(s) | 77 |
| XspI | CTAG | 5 cut(s) | 78, 398, 405, 552, 617 |