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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 495, 540 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 603 |
| AatII | GACGTC | 1 cut(s) | 918 |
| Acc36I | ACCTGC | 1 cut(s) | 630 |
| AccB1I | GGYRCC | 1 cut(s) | 758 |
| AciI | CCGC | 3 cut(s) | 397, 616, 637 |
| AclWI | GGATC | 2 cut(s) | 141, 428 |
| AcvI | CACGTG | 2 cut(s) | 659, 677 |
| AcyI | GRCGYC | 2 cut(s) | 717, 915 |
| AdeI | CACNNNGTG | 2 cut(s) | 662, 788 |
| AfaI | GTAC | 2 cut(s) | 649, 884 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 64, 303, 554, 625, 678, 707, 772 |
| AflIII | ACRYGT | 2 cut(s) | 656, 674 |
| AgsI | TTSAA | 5 cut(s) | 96, 224, 253, 501, 940 |
| AjnI | CCWGG | 1 cut(s) | 700 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 125, 157 |
| AluBI | AGCT | 4 cut(s) | 337, 439, 461, 839 |
| AluI | AGCT | 4 cut(s) | 337, 439, 461, 839 |
| Alw21I | GWGCWC | 2 cut(s) | 793, 960 |
| Alw26I | GTCTC | 1 cut(s) | 906 |
| Alw44I | GTGCAC | 2 cut(s) | 789, 956 |
| AlwI | GGATC | 2 cut(s) | 141, 428 |
| AoxI | GGCC | 1 cut(s) | 503 |
| ApaLI | GTGCAC | 2 cut(s) | 789, 956 |
| ApeKI | GCWGC | 2 cut(s) | 839, 968 |
| AseI | ATTAAT | 1 cut(s) | 444 |
| AspA2I | CCTAGG | 1 cut(s) | 770 |
| AspLEI | GCGC | 2 cut(s) | 240, 740 |
| AspS9I | GGNCC | 3 cut(s) | 504, 605, 862 |
| AsuHPI | GGTGA | 1 cut(s) | 916 |
| AvaII | GGWCC | 2 cut(s) | 605, 862 |
| AvrII | CCTAGG | 1 cut(s) | 770 |
| AxyI | CCTNAGG | 1 cut(s) | 866 |
| BaeGI | GKGCMC | 2 cut(s) | 793, 960 |
| BanI | GGYRCC | 1 cut(s) | 758 |
| BauI | CACGAG | 3 cut(s) | 424, 726, 747 |
| BbrPI | CACGTG | 2 cut(s) | 659, 677 |
| BbsI | GAAGAC | 1 cut(s) | 939 |
| Bbv12I | GWGCWC | 2 cut(s) | 793, 960 |
| BbvI | GCAGC | 2 cut(s) | 826, 955 |
| BccI | CCATC | 3 cut(s) | 93, 411, 927 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 111, 145 |
| BciT130I | CCWGG | 1 cut(s) | 702 |
| BciVI | GTATCC | 1 cut(s) | 707 |
| BcoDI | GTCTC | 1 cut(s) | 906 |
| BfaI | CTAG | 3 cut(s) | 15, 771, 836 |
| BfmI | CTRYAG | 3 cut(s) | 290, 456, 969 |
| BfoI | RGCGCY | 1 cut(s) | 741 |
| BfuAI | ACCTGC | 1 cut(s) | 630 |
| BfuI | GTATCC | 1 cut(s) | 707 |
| BisI | GCNGC | 2 cut(s) | 840, 969 |
| BlnI | CCTAGG | 1 cut(s) | 770 |
| BlsI | GCNGC | 2 cut(s) | 841, 970 |
| Bme1390I | CCNGG | 1 cut(s) | 702 |
| Bme18I | GGWCC | 2 cut(s) | 605, 862 |
| BmgT120I | GGNCC | 3 cut(s) | 504, 605, 862 |
| BmiI | GGNNCC | 2 cut(s) | 760, 863 |
| BmrFI | CCNGG | 1 cut(s) | 702 |
| BmsI | GCATC | 4 cut(s) | 174, 268, 811, 955 |
| BpiI | GAAGAC | 1 cut(s) | 939 |
| BpuEI | CTTGAG | 1 cut(s) | 153 |
| BsaAI | YACGTR | 2 cut(s) | 659, 677 |
| BsaHI | GRCGYC | 2 cut(s) | 717, 915 |
| BsaJI | CCNNGG | 3 cut(s) | 700, 741, 770 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 673, 703, 751, 781 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 64, 303, 554, 625, 678, 707, 772 |
| Bse21I | CCTNAGG | 1 cut(s) | 866 |
| Bse3DI | GCAATG | 1 cut(s) | 673 |
| BseBI | CCWGG | 1 cut(s) | 702 |
| BseDI | CCNNGG | 3 cut(s) | 700, 741, 770 |
| BseGI | GGATG | 2 cut(s) | 422, 970 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 64, 303, 554, 625, 678, 707, 772 |
| BseMI | GCAATG | 1 cut(s) | 673 |
| BseMII | CTCAG | 3 cut(s) | 222, 453, 857 |
| BseSI | GKGCMC | 2 cut(s) | 793, 960 |
| BseXI | GCAGC | 2 cut(s) | 826, 955 |
| BshFI | GGCC | 1 cut(s) | 505 |
| BshNI | GGYRCC | 1 cut(s) | 758 |
| BsiHKAI | GWGCWC | 2 cut(s) | 793, 960 |
| BslFI | GGGAC | 2 cut(s) | 609, 875 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 64, 303, 554, 625, 678, 707, 772 |
| BsmAI | GTCTC | 1 cut(s) | 906 |
| BsmBI | CGTCTC | 1 cut(s) | 906 |
| BsmFI | GGGAC | 2 cut(s) | 609, 875 |
| BsnI | GGCC | 1 cut(s) | 505 |
| Bsp1286I | GDGCHC | 2 cut(s) | 793, 960 |
| Bsp143I | GATC | 2 cut(s) | 133, 420 |
| Bsp19I | CCATGG | 1 cut(s) | 741 |
| BspACI | CCGC | 3 cut(s) | 397, 616, 637 |
| BspANI | GGCC | 1 cut(s) | 505 |
| BspCNI | CTCAG | 3 cut(s) | 221, 454, 858 |
| BspHI | TCATGA | 2 cut(s) | 483, 526 |
| BspLI | GGNNCC | 2 cut(s) | 760, 863 |
| BspMAI | CTGCAG | 1 cut(s) | 973 |
| BspMI | ACCTGC | 1 cut(s) | 630 |
| BspPI | GGATC | 2 cut(s) | 141, 428 |
| BspQI | GCTCTTC | 1 cut(s) | 288 |
| BspT107I | GGYRCC | 1 cut(s) | 758 |
| BsrDI | GCAATG | 1 cut(s) | 673 |
| BssECI | CCNNGG | 3 cut(s) | 700, 741, 770 |
| BssMI | GATC | 2 cut(s) | 133, 420 |
| BssNI | GRCGYC | 2 cut(s) | 717, 915 |
| BssSI | CACGAG | 3 cut(s) | 424, 726, 747 |
| BssT1I | CCWWGG | 2 cut(s) | 741, 770 |
| Bst2BI | CACGAG | 3 cut(s) | 424, 726, 747 |
| Bst2UI | CCWGG | 1 cut(s) | 702 |
| Bst4CI | ACNGT | 2 cut(s) | 62, 294 |
| Bst6I | CTCTTC | 1 cut(s) | 288 |
| BstACI | GRCGYC | 2 cut(s) | 717, 915 |
| BstBAI | YACGTR | 2 cut(s) | 659, 677 |
| BstC8I | GCNNGC | 1 cut(s) | 165 |
| BstDEI | CTNAG | 4 cut(s) | 208, 462, 516, 866 |
| BstDSI | CCRYGG | 1 cut(s) | 741 |
| BstEII | GGTNACC | 1 cut(s) | 67 |
| BstF5I | GGATG | 2 cut(s) | 422, 970 |
| BstH2I | RGCGCY | 1 cut(s) | 741 |
| BstHHI | GCGC | 2 cut(s) | 240, 740 |
| BstKTI | GATC | 2 cut(s) | 136, 423 |
| BstMAI | GTCTC | 1 cut(s) | 906 |
| BstMBI | GATC | 2 cut(s) | 133, 420 |
| BstNI | CCWGG | 1 cut(s) | 702 |
| BstNSI | RCATGY | 1 cut(s) | 167 |
| BstPI | GGTNACC | 1 cut(s) | 67 |
| BstSCI | CCNGG | 1 cut(s) | 700 |
| BstSFI | CTRYAG | 3 cut(s) | 290, 456, 969 |
| BstSLI | GKGCMC | 2 cut(s) | 793, 960 |
| BstV1I | GCAGC | 2 cut(s) | 826, 955 |
| BstV2I | GAAGAC | 1 cut(s) | 939 |
| BstX2I | RGATCY | 1 cut(s) | 133 |
| BstYI | RGATCY | 1 cut(s) | 133 |
| Bsu36I | CCTNAGG | 1 cut(s) | 866 |
| BsuI | GTATCC | 1 cut(s) | 707 |
| BsuRI | GGCC | 1 cut(s) | 505 |
| BtgI | CCRYGG | 1 cut(s) | 741 |
| BtsCI | GGATG | 2 cut(s) | 422, 970 |
| BveI | ACCTGC | 1 cut(s) | 630 |
| Cac8I | GCNNGC | 1 cut(s) | 165 |
| CciI | TCATGA | 2 cut(s) | 483, 526 |
| CfoI | GCGC | 2 cut(s) | 240, 740 |
| Cfr13I | GGNCC | 3 cut(s) | 504, 605, 862 |
| CseI | GACGC | 2 cut(s) | 567, 706 |
| Csp6I | GTAC | 2 cut(s) | 648, 883 |
| CviJI | RGCY | 9 cut(s) | 48, 337, 374, 439, 461, 505, 725, 746, 839 |
| CviKI_1 | RGCY | 9 cut(s) | 48, 337, 374, 439, 461, 505, 725, 746, 839 |
| CviQI | GTAC | 2 cut(s) | 648, 883 |
| DdeI | CTNAG | 4 cut(s) | 208, 462, 516, 866 |
| DpnI | GATC | 2 cut(s) | 135, 422 |
| DpnII | GATC | 2 cut(s) | 133, 420 |
| DraIII | CACNNNGTG | 2 cut(s) | 662, 788 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 603 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 603 |
| Eam1104I | CTCTTC | 1 cut(s) | 288 |
| EarI | CTCTTC | 1 cut(s) | 288 |
| Eco130I | CCWWGG | 2 cut(s) | 741, 770 |
| Eco47I | GGWCC | 2 cut(s) | 605, 862 |
| Eco72I | CACGTG | 2 cut(s) | 659, 677 |
| Eco81I | CCTNAGG | 1 cut(s) | 866 |
| Eco91I | GGTNACC | 1 cut(s) | 67 |
| EcoO109I | RGGNCCY | 1 cut(s) | 862 |
| EcoO65I | GGTNACC | 1 cut(s) | 67 |
| EcoRII | CCWGG | 1 cut(s) | 700 |
| EcoT14I | CCWWGG | 2 cut(s) | 741, 770 |
| ErhI | CCWWGG | 2 cut(s) | 741, 770 |
| Esp3I | CGTCTC | 1 cut(s) | 906 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 870, 902 |
| FaqI | GGGAC | 2 cut(s) | 609, 875 |
| FauNDI | CATATG | 1 cut(s) | 195 |
| Fnu4HI | GCNGC | 2 cut(s) | 840, 969 |
| FokI | GGATG | 2 cut(s) | 429, 977 |
| Fsp4HI | GCNGC | 2 cut(s) | 840, 969 |
| FspBI | CTAG | 3 cut(s) | 15, 771, 836 |
| GlaI | GCGC | 2 cut(s) | 239, 739 |
| GluI | GCNGC | 2 cut(s) | 840, 969 |
| HaeII | RGCGCY | 1 cut(s) | 741 |
| HaeIII | GGCC | 1 cut(s) | 505 |
| HgaI | GACGC | 2 cut(s) | 567, 706 |
| HhaI | GCGC | 2 cut(s) | 240, 740 |
| Hin1I | GRCGYC | 2 cut(s) | 717, 915 |
| Hin6I | GCGC | 2 cut(s) | 238, 738 |
| HinP1I | GCGC | 2 cut(s) | 238, 738 |
| HinfI | GANTC | 2 cut(s) | 18, 38 |
| HphI | GGTGA | 1 cut(s) | 916 |
| Hpy166II | GTNNAC | 4 cut(s) | 314, 791, 883, 958 |
| Hpy188I | TCNGA | 3 cut(s) | 52, 133, 211 |
| Hpy188III | TCNNGA | 4 cut(s) | 181, 424, 484, 527 |
| Hpy8I | GTNNAC | 4 cut(s) | 314, 791, 883, 958 |
| HpyAV | CCTTC | 2 cut(s) | 370, 623 |
| HpyCH4III | ACNGT | 2 cut(s) | 62, 294 |
| HpyCH4IV | ACGT | 5 cut(s) | 598, 658, 676, 787, 915 |
| HpyCH4V | TGCA | 8 cut(s) | 275, 545, 791, 824, 842, 890, 958, 971 |
| HpyF3I | CTNAG | 4 cut(s) | 208, 462, 516, 866 |
| HpySE526I | ACGT | 5 cut(s) | 598, 658, 676, 787, 915 |
| Hsp92I | GRCGYC | 2 cut(s) | 717, 915 |
| HspAI | GCGC | 2 cut(s) | 238, 738 |
| Kzo9I | GATC | 2 cut(s) | 133, 420 |
| LguI | GCTCTTC | 1 cut(s) | 288 |
| LmnI | GCTCC | 2 cut(s) | 565, 871 |
| LpnPI | CCDG | 9 cut(s) | 30, 399, 625, 687, 714, 835, 844, 878, 957 |
| Lsp1109I | GCAGC | 2 cut(s) | 826, 955 |
| LweI | GCATC | 4 cut(s) | 174, 268, 811, 955 |
| MaeI | CTAG | 3 cut(s) | 15, 771, 836 |
| MaeII | ACGT | 5 cut(s) | 598, 658, 676, 787, 915 |
| MaeIII | GTNAC | 1 cut(s) | 67 |
| MalI | GATC | 2 cut(s) | 135, 422 |
| MboI | GATC | 2 cut(s) | 133, 420 |
| MboII | GAAGA | 2 cut(s) | 275, 944 |
| MflI | RGATCY | 1 cut(s) | 133 |
| MhlI | GDGCHC | 2 cut(s) | 793, 960 |
| MluCI | AATT | 5 cut(s) | 339, 490, 496, 535, 797 |
| MlyI | GAGTC | 2 cut(s) | 12, 32 |
| MseI | TTAA | 2 cut(s) | 444, 800 |
| MslI | CAYNNNNRTG | 4 cut(s) | 482, 711, 819, 963 |
| MspR9I | CCNGG | 1 cut(s) | 702 |
| MvaI | CCWGG | 1 cut(s) | 702 |
| NcoI | CCATGG | 1 cut(s) | 741 |
| NdeI | CATATG | 1 cut(s) | 195 |
| NdeII | GATC | 2 cut(s) | 133, 420 |
| NlaIV | GGNNCC | 2 cut(s) | 760, 863 |
| NspI | RCATGY | 1 cut(s) | 167 |
| PaeI | GCATGC | 1 cut(s) | 167 |
| PagI | TCATGA | 2 cut(s) | 483, 526 |
| PciSI | GCTCTTC | 1 cut(s) | 288 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 784 |
| PkrI | GCNGC | 2 cut(s) | 841, 970 |
| PleI | GAGTC | 2 cut(s) | 12, 32 |
| PmaCI | CACGTG | 2 cut(s) | 659, 677 |
| PmlI | CACGTG | 2 cut(s) | 659, 677 |
| PpsI | GAGTC | 2 cut(s) | 12, 32 |
| Ppu21I | YACGTR | 2 cut(s) | 659, 677 |
| PpuMI | RGGWCCY | 1 cut(s) | 862 |
| PshBI | ATTAAT | 1 cut(s) | 444 |
| PsiI | TTATAA | 2 cut(s) | 495, 540 |
| Psp5II | RGGWCCY | 1 cut(s) | 862 |
| Psp6I | CCWGG | 1 cut(s) | 700 |
| PspCI | CACGTG | 2 cut(s) | 659, 677 |
| PspEI | GGTNACC | 1 cut(s) | 67 |
| PspGI | CCWGG | 1 cut(s) | 700 |
| PspN4I | GGNNCC | 2 cut(s) | 760, 863 |
| PspPI | GGNCC | 3 cut(s) | 504, 605, 862 |
| PspPPI | RGGWCCY | 1 cut(s) | 862 |
| PstI | CTGCAG | 1 cut(s) | 973 |
| PsuI | RGATCY | 1 cut(s) | 133 |
| RsaI | GTAC | 2 cut(s) | 649, 884 |
| RsaNI | GTAC | 2 cut(s) | 648, 883 |
| RseI | CAYNNNNRTG | 4 cut(s) | 482, 711, 819, 963 |
| SapI | GCTCTTC | 1 cut(s) | 288 |
| SaqAI | TTAA | 2 cut(s) | 444, 800 |
| SatI | GCNGC | 2 cut(s) | 840, 969 |
| Sau3AI | GATC | 2 cut(s) | 133, 420 |
| Sau96I | GGNCC | 3 cut(s) | 504, 605, 862 |
| SchI | GAGTC | 2 cut(s) | 12, 32 |
| ScrFI | CCNGG | 1 cut(s) | 702 |
| SduI | GDGCHC | 2 cut(s) | 793, 960 |
| SfaNI | GCATC | 4 cut(s) | 174, 268, 811, 955 |
| SfcI | CTRYAG | 3 cut(s) | 290, 456, 969 |
| SinI | GGWCC | 2 cut(s) | 605, 862 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 482, 711, 819, 963 |
| SmlI | CTYRAG | 1 cut(s) | 168 |
| SmoI | CTYRAG | 1 cut(s) | 168 |
| SphI | GCATGC | 1 cut(s) | 167 |
| Sse9I | AATT | 5 cut(s) | 339, 490, 496, 535, 797 |
| SsiI | CCGC | 3 cut(s) | 397, 616, 637 |
| SspI | AATATT | 1 cut(s) | 105 |
| SspMI | CTAG | 3 cut(s) | 15, 771, 836 |
| StyD4I | CCNGG | 1 cut(s) | 700 |
| StyI | CCWWGG | 2 cut(s) | 741, 770 |
| TaaI | ACNGT | 2 cut(s) | 62, 294 |
| TaiI | ACGT | 5 cut(s) | 601, 661, 679, 790, 918 |
| TaqI | TCGA | 2 cut(s) | 5, 21 |
| TasI | AATT | 5 cut(s) | 339, 490, 496, 535, 797 |
| Tru1I | TTAA | 2 cut(s) | 444, 800 |
| Tru9I | TTAA | 2 cut(s) | 444, 800 |
| TseI | GCWGC | 2 cut(s) | 839, 968 |
| TspDTI | ATGAA | 4 cut(s) | 24, 422, 515, 966 |
| VneI | GTGCAC | 2 cut(s) | 789, 956 |
| VpaK11BI | GGWCC | 2 cut(s) | 605, 862 |
| VspI | ATTAAT | 1 cut(s) | 444 |
| XceI | RCATGY | 1 cut(s) | 167 |
| XmaJI | CCTAGG | 1 cut(s) | 770 |
| XspI | CTAG | 3 cut(s) | 15, 771, 836 |
| ZraI | GACGTC | 1 cut(s) | 916 |