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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 548 |
| AccII | CGCG | 1 cut(s) | 218 |
| AciI | CCGC | 1 cut(s) | 340 |
| AclI | AACGTT | 1 cut(s) | 280 |
| AclWI | GGATC | 3 cut(s) | 97, 109, 110 |
| AcsI | RAATTY | 1 cut(s) | 407 |
| AfaI | GTAC | 2 cut(s) | 112, 233 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 64, 241 |
| AflII | CTTAAG | 1 cut(s) | 89 |
| AgsI | TTSAA | 2 cut(s) | 146, 355 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 355 |
| AluBI | AGCT | 5 cut(s) | 24, 158, 179, 541, 563 |
| AluI | AGCT | 5 cut(s) | 24, 158, 179, 541, 563 |
| Alw26I | GTCTC | 2 cut(s) | 32, 475 |
| AlwI | GGATC | 3 cut(s) | 97, 109, 110 |
| Ama87I | CYCGRG | 1 cut(s) | 272 |
| ApoI | RAATTY | 1 cut(s) | 407 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 384 |
| AspLEI | GCGC | 2 cut(s) | 81, 220 |
| AvaI | CYCGRG | 1 cut(s) | 272 |
| BamHI | GGATCC | 1 cut(s) | 102 |
| BanI | GGYRCC | 1 cut(s) | 548 |
| BbsI | GAAGAC | 2 cut(s) | 252, 455 |
| BccI | CCATC | 3 cut(s) | 92, 321, 397 |
| BciVI | GTATCC | 1 cut(s) | 47 |
| BcoDI | GTCTC | 2 cut(s) | 32, 475 |
| BfaI | CTAG | 3 cut(s) | 35, 516, 594 |
| BfrI | CTTAAG | 1 cut(s) | 89 |
| BfuI | GTATCC | 1 cut(s) | 47 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 355 |
| BmeT110I | CYCGRG | 1 cut(s) | 272 |
| BmiI | GGNNCC | 2 cut(s) | 104, 550 |
| BmsI | GCATC | 1 cut(s) | 94 |
| BpiI | GAAGAC | 2 cut(s) | 252, 455 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 13, 45 |
| BsaBI | GATNNNNATC | 1 cut(s) | 440 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 64, 241 |
| Bse8I | GATNNNNATC | 1 cut(s) | 440 |
| BseGI | GGATG | 1 cut(s) | 291 |
| BseJI | GATNNNNATC | 1 cut(s) | 440 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 64, 241 |
| BseMII | CTCAG | 1 cut(s) | 98 |
| Bsh1236I | CGCG | 1 cut(s) | 218 |
| BshNI | GGYRCC | 1 cut(s) | 548 |
| BsiHKCI | CYCGRG | 1 cut(s) | 272 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 64, 241 |
| BsmAI | GTCTC | 2 cut(s) | 32, 475 |
| BsmBI | CGTCTC | 1 cut(s) | 475 |
| BsoBI | CYCGRG | 1 cut(s) | 272 |
| Bsp143I | GATC | 3 cut(s) | 102, 114, 441 |
| BspACI | CCGC | 1 cut(s) | 340 |
| BspCNI | CTCAG | 1 cut(s) | 99 |
| BspFNI | CGCG | 1 cut(s) | 218 |
| BspHI | TCATGA | 2 cut(s) | 195, 535 |
| BspLI | GGNNCC | 2 cut(s) | 104, 550 |
| BspPI | GGATC | 3 cut(s) | 97, 109, 110 |
| BspT107I | GGYRCC | 1 cut(s) | 548 |
| BspTI | CTTAAG | 1 cut(s) | 89 |
| BssMI | GATC | 3 cut(s) | 102, 114, 441 |
| BstAFI | CTTAAG | 1 cut(s) | 89 |
| BstC8I | GCNNGC | 1 cut(s) | 83 |
| BstDEI | CTNAG | 3 cut(s) | 107, 159, 316 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 239 |
| BstF5I | GGATG | 1 cut(s) | 291 |
| BstFNI | CGCG | 1 cut(s) | 218 |
| BstHHI | GCGC | 2 cut(s) | 81, 220 |
| BstKTI | GATC | 3 cut(s) | 105, 117, 444 |
| BstMAI | GTCTC | 2 cut(s) | 32, 475 |
| BstMBI | GATC | 3 cut(s) | 102, 114, 441 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 155, 176 |
| BstUI | CGCG | 1 cut(s) | 218 |
| BstV2I | GAAGAC | 2 cut(s) | 252, 455 |
| BstX2I | RGATCY | 1 cut(s) | 102 |
| BstYI | RGATCY | 1 cut(s) | 102 |
| BsuI | GTATCC | 1 cut(s) | 47 |
| BtsCI | GGATG | 1 cut(s) | 291 |
| BtsIMutI | CAGTG | 1 cut(s) | 426 |
| Cac8I | GCNNGC | 1 cut(s) | 83 |
| CciI | TCATGA | 2 cut(s) | 195, 535 |
| CfoI | GCGC | 2 cut(s) | 81, 220 |
| CseI | GACGC | 1 cut(s) | 224 |
| Csp6I | GTAC | 2 cut(s) | 111, 232 |
| CviAII | CATG | 5 cut(s) | 196, 208, 506, 536, 553 |
| CviQI | GTAC | 2 cut(s) | 111, 232 |
| DdeI | CTNAG | 3 cut(s) | 107, 159, 316 |
| DpnI | GATC | 3 cut(s) | 104, 116, 443 |
| DpnII | GATC | 3 cut(s) | 102, 114, 441 |
| DriI | GACNNNNNGTC | 1 cut(s) | 355 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 355 |
| Eco88I | CYCGRG | 1 cut(s) | 272 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 239 |
| EcoRI | GAATTC | 1 cut(s) | 407 |
| Esp3I | CGTCTC | 1 cut(s) | 475 |
| FaeI | CATG | 5 cut(s) | 199, 211, 509, 539, 556 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 8, 40 |
| FatI | CATG | 5 cut(s) | 195, 207, 505, 535, 552 |
| FokI | GGATG | 1 cut(s) | 278 |
| FspBI | CTAG | 3 cut(s) | 35, 516, 594 |
| GlaI | GCGC | 2 cut(s) | 80, 219 |
| HgaI | GACGC | 1 cut(s) | 224 |
| HhaI | GCGC | 2 cut(s) | 81, 220 |
| Hin1II | CATG | 5 cut(s) | 199, 211, 509, 539, 556 |
| Hin6I | GCGC | 2 cut(s) | 79, 218 |
| HinP1I | GCGC | 2 cut(s) | 79, 218 |
| HinfI | GANTC | 3 cut(s) | 299, 451, 502 |
| Hpy166II | GTNNAC | 1 cut(s) | 416 |
| Hpy188I | TCNGA | 1 cut(s) | 501 |
| Hpy188III | TCNNGA | 6 cut(s) | 71, 106, 196, 311, 445, 536 |
| Hpy8I | GTNNAC | 1 cut(s) | 416 |
| HpyCH4IV | ACGT | 3 cut(s) | 280, 520, 558 |
| HpyCH4V | TGCA | 1 cut(s) | 476 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 155, 176 |
| HpyF3I | CTNAG | 3 cut(s) | 107, 159, 316 |
| HpySE526I | ACGT | 3 cut(s) | 280, 520, 558 |
| Hsp92II | CATG | 5 cut(s) | 199, 211, 509, 539, 556 |
| HspAI | GCGC | 2 cut(s) | 79, 218 |
| Kzo9I | GATC | 3 cut(s) | 102, 114, 441 |
| LmnI | GCTCC | 1 cut(s) | 225 |
| LpnPI | CCDG | 5 cut(s) | 23, 95, 119, 317, 324 |
| LweI | GCATC | 1 cut(s) | 94 |
| MaeI | CTAG | 3 cut(s) | 35, 516, 594 |
| MaeII | ACGT | 3 cut(s) | 280, 520, 558 |
| MaeIII | GTNAC | 3 cut(s) | 5, 347, 586 |
| MalI | GATC | 3 cut(s) | 104, 116, 443 |
| MboI | GATC | 3 cut(s) | 102, 114, 441 |
| MboII | GAAGA | 2 cut(s) | 257, 460 |
| MflI | RGATCY | 1 cut(s) | 102 |
| MluCI | AATT | 4 cut(s) | 189, 373, 407, 543 |
| MlyI | GAGTC | 1 cut(s) | 445 |
| MnlI | CCTC | 5 cut(s) | 38, 160, 235, 245, 347 |
| MroXI | GAANNNNTTC | 1 cut(s) | 384 |
| MseI | TTAA | 2 cut(s) | 90, 604 |
| MslI | CAYNNNNRTG | 2 cut(s) | 210, 510 |
| MspCI | CTTAAG | 1 cut(s) | 89 |
| MvnI | CGCG | 1 cut(s) | 218 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 155, 176 |
| NdeII | GATC | 3 cut(s) | 102, 114, 441 |
| NlaIII | CATG | 5 cut(s) | 199, 211, 509, 539, 556 |
| NlaIV | GGNNCC | 2 cut(s) | 104, 550 |
| NmuCI | GTSAC | 2 cut(s) | 347, 586 |
| PaeR7I | CTCGAG | 1 cut(s) | 272 |
| PagI | TCATGA | 2 cut(s) | 195, 535 |
| PdmI | GAANNNNTTC | 1 cut(s) | 384 |
| PfeI | GAWTC | 2 cut(s) | 299, 502 |
| PleI | GAGTC | 1 cut(s) | 445 |
| PpsI | GAGTC | 1 cut(s) | 445 |
| Psp1406I | AACGTT | 1 cut(s) | 280 |
| PspN4I | GGNNCC | 2 cut(s) | 104, 550 |
| PspXI | VCTCGAGB | 1 cut(s) | 272 |
| PsuI | RGATCY | 1 cut(s) | 102 |
| RsaI | GTAC | 2 cut(s) | 112, 233 |
| RsaNI | GTAC | 2 cut(s) | 111, 232 |
| RseI | CAYNNNNRTG | 2 cut(s) | 210, 510 |
| SaqAI | TTAA | 2 cut(s) | 90, 604 |
| Sau3AI | GATC | 3 cut(s) | 102, 114, 441 |
| SchI | GAGTC | 1 cut(s) | 445 |
| SfaNI | GCATC | 1 cut(s) | 94 |
| Sfr274I | CTCGAG | 1 cut(s) | 272 |
| SlaI | CTCGAG | 1 cut(s) | 272 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 210, 510 |
| SmlI | CTYRAG | 2 cut(s) | 89, 272 |
| SmoI | CTYRAG | 2 cut(s) | 89, 272 |
| Sse9I | AATT | 4 cut(s) | 189, 373, 407, 543 |
| SsiI | CCGC | 1 cut(s) | 340 |
| SspMI | CTAG | 3 cut(s) | 35, 516, 594 |
| TaiI | ACGT | 3 cut(s) | 283, 523, 561 |
| TaqI | TCGA | 2 cut(s) | 273, 444 |
| TasI | AATT | 4 cut(s) | 189, 373, 407, 543 |
| TfiI | GAWTC | 2 cut(s) | 299, 502 |
| Tru1I | TTAA | 2 cut(s) | 90, 604 |
| Tru9I | TTAA | 2 cut(s) | 90, 604 |
| TscAI | CASTG | 1 cut(s) | 433 |
| TseFI | GTSAC | 2 cut(s) | 347, 586 |
| Tsp45I | GTSAC | 2 cut(s) | 347, 586 |
| TspDTI | ATGAA | 5 cut(s) | 189, 224, 494, 524, 569 |
| TspGWI | ACGGA | 1 cut(s) | 284 |
| TspRI | CASTG | 1 cut(s) | 433 |
| Vha464I | CTTAAG | 1 cut(s) | 89 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 239 |
| XapI | RAATTY | 1 cut(s) | 407 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 258 |
| XhoI | CTCGAG | 1 cut(s) | 272 |
| XmnI | GAANNNNTTC | 1 cut(s) | 384 |
| XspI | CTAG | 3 cut(s) | 35, 516, 594 |