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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 161 |
| AccII | CGCG | 2 cut(s) | 123, 651 |
| AciI | CCGC | 3 cut(s) | 121, 138, 171 |
| AclI | AACGTT | 1 cut(s) | 393 |
| AclWI | GGATC | 3 cut(s) | 178, 190, 191 |
| AfaI | GTAC | 3 cut(s) | 193, 219, 335 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 34, 180, 343, 662 |
| AgsI | TTSAA | 1 cut(s) | 248 |
| AluBI | AGCT | 6 cut(s) | 99, 135, 149, 260, 281, 566 |
| AluI | AGCT | 6 cut(s) | 99, 135, 149, 260, 281, 566 |
| AlwI | GGATC | 3 cut(s) | 178, 190, 191 |
| Ama87I | CYCGRG | 1 cut(s) | 374 |
| AoxI | GGCC | 4 cut(s) | 24, 36, 61, 270 |
| ApeKI | GCWGC | 1 cut(s) | 239 |
| AspA2I | CCTAGG | 1 cut(s) | 58 |
| AspLEI | GCGC | 2 cut(s) | 653, 669 |
| AspS9I | GGNCC | 3 cut(s) | 25, 37, 62 |
| AvaI | CYCGRG | 1 cut(s) | 374 |
| AvrII | CCTAGG | 1 cut(s) | 58 |
| AxyI | CCTNAGG | 1 cut(s) | 657 |
| BamHI | GGATCC | 1 cut(s) | 183 |
| BbsI | GAAGAC | 3 cut(s) | 38, 354, 458 |
| BbvI | GCAGC | 1 cut(s) | 226 |
| BceAI | ACGGC | 2 cut(s) | 51, 158 |
| BfaI | CTAG | 4 cut(s) | 59, 519, 606, 670 |
| BfoI | RGCGCY | 1 cut(s) | 670 |
| BisI | GCNGC | 2 cut(s) | 121, 240 |
| BlnI | CCTAGG | 1 cut(s) | 58 |
| BlpI | GCTNAGC | 1 cut(s) | 100 |
| BlsI | GCNGC | 2 cut(s) | 122, 241 |
| BmeT110I | CYCGRG | 1 cut(s) | 374 |
| BmgT120I | GGNCC | 3 cut(s) | 25, 37, 62 |
| BmiI | GGNNCC | 2 cut(s) | 185, 553 |
| BmsI | GCATC | 2 cut(s) | 307, 534 |
| BpiI | GAAGAC | 3 cut(s) | 38, 354, 458 |
| BpmI | CTGGAG | 1 cut(s) | 653 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 100 |
| BsaJI | CCNNGG | 2 cut(s) | 21, 58 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 34, 180, 343, 662 |
| Bse1I | ACTGG | 1 cut(s) | 108 |
| Bse21I | CCTNAGG | 1 cut(s) | 657 |
| BseDI | CCNNGG | 2 cut(s) | 21, 58 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 34, 180, 343, 662 |
| BseMII | CTCAG | 1 cut(s) | 114 |
| BseNI | ACTGG | 1 cut(s) | 108 |
| BseXI | GCAGC | 1 cut(s) | 226 |
| Bsh1236I | CGCG | 2 cut(s) | 123, 651 |
| BshFI | GGCC | 4 cut(s) | 26, 38, 63, 272 |
| BsiHKCI | CYCGRG | 1 cut(s) | 374 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 34, 180, 343, 662 |
| BsnI | GGCC | 4 cut(s) | 26, 38, 63, 272 |
| BsoBI | CYCGRG | 1 cut(s) | 374 |
| Bsp143I | GATC | 2 cut(s) | 183, 195 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 100 |
| BspACI | CCGC | 3 cut(s) | 121, 138, 171 |
| BspANI | GGCC | 4 cut(s) | 26, 38, 63, 272 |
| BspCNI | CTCAG | 1 cut(s) | 113 |
| BspFNI | CGCG | 2 cut(s) | 123, 651 |
| BspHI | TCATGA | 1 cut(s) | 297 |
| BspLI | GGNNCC | 2 cut(s) | 185, 553 |
| BspPI | GGATC | 3 cut(s) | 178, 190, 191 |
| BsrI | ACTGG | 1 cut(s) | 108 |
| BssECI | CCNNGG | 2 cut(s) | 21, 58 |
| BssMI | GATC | 2 cut(s) | 183, 195 |
| BssT1I | CCWWGG | 2 cut(s) | 21, 58 |
| Bst6I | CTCTTC | 1 cut(s) | 69 |
| BstDEI | CTNAG | 3 cut(s) | 100, 188, 657 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 341, 660 |
| BstFNI | CGCG | 2 cut(s) | 123, 651 |
| BstH2I | RGCGCY | 1 cut(s) | 670 |
| BstHHI | GCGC | 2 cut(s) | 653, 669 |
| BstKTI | GATC | 2 cut(s) | 186, 198 |
| BstMBI | GATC | 2 cut(s) | 183, 195 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 88, 126, 146, 165, 248, 257, 278 |
| BstUI | CGCG | 2 cut(s) | 123, 651 |
| BstV1I | GCAGC | 1 cut(s) | 226 |
| BstV2I | GAAGAC | 3 cut(s) | 38, 354, 458 |
| BstX2I | RGATCY | 1 cut(s) | 183 |
| BstYI | RGATCY | 1 cut(s) | 183 |
| Bsu36I | CCTNAGG | 1 cut(s) | 657 |
| BsuRI | GGCC | 4 cut(s) | 26, 38, 63, 272 |
| BtsI | GCAGTG | 1 cut(s) | 386 |
| BtsIMutI | CAGTG | 3 cut(s) | 119, 386, 429 |
| CciI | TCATGA | 1 cut(s) | 297 |
| CfoI | GCGC | 2 cut(s) | 653, 669 |
| Cfr13I | GGNCC | 3 cut(s) | 25, 37, 62 |
| CseI | GACGC | 3 cut(s) | 93, 112, 531 |
| Csp6I | GTAC | 3 cut(s) | 192, 218, 334 |
| CviAII | CATG | 3 cut(s) | 298, 310, 556 |
| CviQI | GTAC | 3 cut(s) | 192, 218, 334 |
| DdeI | CTNAG | 3 cut(s) | 100, 188, 657 |
| DpnI | GATC | 2 cut(s) | 185, 197 |
| DpnII | GATC | 2 cut(s) | 183, 195 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 161 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 161 |
| Eam1104I | CTCTTC | 1 cut(s) | 69 |
| EarI | CTCTTC | 1 cut(s) | 69 |
| EciI | GGCGGA | 1 cut(s) | 127 |
| Eco130I | CCWWGG | 2 cut(s) | 21, 58 |
| Eco81I | CCTNAGG | 1 cut(s) | 657 |
| Eco88I | CYCGRG | 1 cut(s) | 374 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 341, 660 |
| EcoT14I | CCWWGG | 2 cut(s) | 21, 58 |
| ErhI | CCWWGG | 2 cut(s) | 21, 58 |
| FaeI | CATG | 3 cut(s) | 301, 313, 559 |
| FaiI | YATR | 9 cut(s) | 290, 299, 311, 364, 540, 557, 584, 600, 645 |
| FatI | CATG | 3 cut(s) | 297, 309, 555 |
| Fnu4HI | GCNGC | 2 cut(s) | 121, 240 |
| Fsp4HI | GCNGC | 2 cut(s) | 121, 240 |
| FspBI | CTAG | 4 cut(s) | 59, 519, 606, 670 |
| GlaI | GCGC | 2 cut(s) | 652, 668 |
| GluI | GCNGC | 2 cut(s) | 121, 240 |
| GsuI | CTGGAG | 1 cut(s) | 653 |
| HaeII | RGCGCY | 1 cut(s) | 670 |
| HaeIII | GGCC | 4 cut(s) | 26, 38, 63, 272 |
| HgaI | GACGC | 3 cut(s) | 93, 112, 531 |
| HhaI | GCGC | 2 cut(s) | 653, 669 |
| Hin1II | CATG | 3 cut(s) | 301, 313, 559 |
| Hin6I | GCGC | 2 cut(s) | 651, 667 |
| HinP1I | GCGC | 2 cut(s) | 651, 667 |
| HincII | GTYRAC | 1 cut(s) | 178 |
| HindII | GTYRAC | 1 cut(s) | 178 |
| HinfI | GANTC | 3 cut(s) | 401, 454, 635 |
| Hpy166II | GTNNAC | 1 cut(s) | 178 |
| Hpy188I | TCNGA | 2 cut(s) | 213, 504 |
| Hpy188III | TCNNGA | 5 cut(s) | 298, 398, 413, 606, 632 |
| Hpy8I | GTNNAC | 1 cut(s) | 178 |
| HpyAV | CCTTC | 2 cut(s) | 6, 475 |
| HpyCH4IV | ACGT | 2 cut(s) | 393, 561 |
| HpyCH4V | TGCA | 2 cut(s) | 320, 479 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 88, 126, 146, 165, 248, 257, 278 |
| HpyF3I | CTNAG | 3 cut(s) | 100, 188, 657 |
| HpySE526I | ACGT | 2 cut(s) | 393, 561 |
| Hsp92II | CATG | 3 cut(s) | 301, 313, 559 |
| HspAI | GCGC | 2 cut(s) | 651, 667 |
| Kzo9I | GATC | 2 cut(s) | 183, 195 |
| LmnI | GCTCC | 2 cut(s) | 140, 551 |
| LpnPI | CCDG | 8 cut(s) | 41, 53, 78, 106, 121, 166, 419, 617 |
| Lsp1109I | GCAGC | 1 cut(s) | 226 |
| LweI | GCATC | 2 cut(s) | 307, 534 |
| MaeI | CTAG | 4 cut(s) | 59, 519, 606, 670 |
| MaeII | ACGT | 2 cut(s) | 393, 561 |
| MaeIII | GTNAC | 1 cut(s) | 398 |
| MalI | GATC | 2 cut(s) | 185, 197 |
| MboI | GATC | 2 cut(s) | 183, 195 |
| MboII | GAAGA | 5 cut(s) | 43, 86, 359, 463, 604 |
| MflI | RGATCY | 1 cut(s) | 183 |
| MluCI | AATT | 4 cut(s) | 291, 601, 627, 640 |
| MlyI | GAGTC | 3 cut(s) | 395, 448, 644 |
| MnlI | CCTC | 4 cut(s) | 262, 337, 347, 656 |
| MslI | CAYNNNNRTG | 2 cut(s) | 312, 587 |
| MvnI | CGCG | 2 cut(s) | 123, 651 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 88, 126, 146, 165, 248, 257, 278 |
| NdeII | GATC | 2 cut(s) | 183, 195 |
| NlaIII | CATG | 3 cut(s) | 301, 313, 559 |
| NlaIV | GGNNCC | 2 cut(s) | 185, 553 |
| NmuCI | GTSAC | 1 cut(s) | 398 |
| PaeR7I | CTCGAG | 1 cut(s) | 374 |
| PagI | TCATGA | 1 cut(s) | 297 |
| PkrI | GCNGC | 2 cut(s) | 122, 241 |
| PleI | GAGTC | 3 cut(s) | 395, 448, 643 |
| PpsI | GAGTC | 3 cut(s) | 395, 448, 643 |
| Psp1406I | AACGTT | 1 cut(s) | 393 |
| PspN4I | GGNNCC | 2 cut(s) | 185, 553 |
| PspPI | GGNCC | 3 cut(s) | 25, 37, 62 |
| PspXI | VCTCGAGB | 1 cut(s) | 374 |
| PsuI | RGATCY | 1 cut(s) | 183 |
| RsaI | GTAC | 3 cut(s) | 193, 219, 335 |
| RsaNI | GTAC | 3 cut(s) | 192, 218, 334 |
| RseI | CAYNNNNRTG | 2 cut(s) | 312, 587 |
| SatI | GCNGC | 2 cut(s) | 121, 240 |
| Sau3AI | GATC | 2 cut(s) | 183, 195 |
| Sau96I | GGNCC | 3 cut(s) | 25, 37, 62 |
| SchI | GAGTC | 3 cut(s) | 395, 448, 644 |
| SfaNI | GCATC | 2 cut(s) | 307, 534 |
| Sfr274I | CTCGAG | 1 cut(s) | 374 |
| SlaI | CTCGAG | 1 cut(s) | 374 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 312, 587 |
| SmlI | CTYRAG | 1 cut(s) | 374 |
| SmoI | CTYRAG | 1 cut(s) | 374 |
| Sse9I | AATT | 4 cut(s) | 291, 601, 627, 640 |
| SsiI | CCGC | 3 cut(s) | 121, 138, 171 |
| SspMI | CTAG | 4 cut(s) | 59, 519, 606, 670 |
| StyI | CCWWGG | 2 cut(s) | 21, 58 |
| TaiI | ACGT | 2 cut(s) | 396, 564 |
| TaqI | TCGA | 2 cut(s) | 375, 414 |
| TasI | AATT | 4 cut(s) | 291, 601, 627, 640 |
| TatI | WGTACW | 1 cut(s) | 217 |
| TauI | GCSGC | 1 cut(s) | 123 |
| TscAI | CASTG | 3 cut(s) | 119, 386, 436 |
| TseFI | GTSAC | 1 cut(s) | 398 |
| TseI | GCWGC | 1 cut(s) | 239 |
| Tsp45I | GTSAC | 1 cut(s) | 398 |
| TspDTI | ATGAA | 4 cut(s) | 291, 326, 527, 572 |
| TspRI | CASTG | 3 cut(s) | 119, 386, 436 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 341, 660 |
| XbaI | TCTAGA | 1 cut(s) | 605 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 360 |
| XhoI | CTCGAG | 1 cut(s) | 374 |
| XmaJI | CCTAGG | 1 cut(s) | 58 |
| XspI | CTAG | 4 cut(s) | 59, 519, 606, 670 |