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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 552 |
| AccIII | TCCGGA | 1 cut(s) | 538 |
| AciI | CCGC | 1 cut(s) | 250 |
| AclWI | GGATC | 2 cut(s) | 440, 510 |
| AcsI | RAATTY | 1 cut(s) | 317 |
| AdeI | CACNNNGTG | 1 cut(s) | 615 |
| AfaI | GTAC | 1 cut(s) | 137 |
| AgsI | TTSAA | 3 cut(s) | 55, 185, 265 |
| AjiI | CACGTC | 1 cut(s) | 25 |
| AjnI | CCWGG | 1 cut(s) | 18 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 177, 209 |
| AluBI | AGCT | 6 cut(s) | 44, 50, 226, 451, 556, 607 |
| AluI | AGCT | 6 cut(s) | 44, 50, 226, 451, 556, 607 |
| Alw21I | GWGCWC | 1 cut(s) | 453 |
| Alw26I | GTCTC | 2 cut(s) | 181, 251 |
| AlwI | GGATC | 2 cut(s) | 440, 510 |
| Ama87I | CYCGRG | 1 cut(s) | 8 |
| Aor13HI | TCCGGA | 1 cut(s) | 538 |
| ApeKI | GCWGC | 1 cut(s) | 68 |
| ApoI | RAATTY | 1 cut(s) | 317 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 294, 534 |
| AsuHPI | GGTGA | 1 cut(s) | 564 |
| AvaI | CYCGRG | 1 cut(s) | 8 |
| BanII | GRGCYC | 1 cut(s) | 453 |
| BauI | CACGAG | 1 cut(s) | 557 |
| BbsI | GAAGAC | 1 cut(s) | 162 |
| Bbv12I | GWGCWC | 1 cut(s) | 453 |
| BbvI | GCAGC | 1 cut(s) | 80 |
| BccI | CCATC | 3 cut(s) | 104, 231, 385 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 404, 438 |
| BciT130I | CCWGG | 1 cut(s) | 20 |
| BcoDI | GTCTC | 2 cut(s) | 181, 251 |
| BfaI | CTAG | 3 cut(s) | 15, 227, 643 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 77 |
| BisI | GCNGC | 1 cut(s) | 69 |
| BlsI | GCNGC | 1 cut(s) | 70 |
| Bme1390I | CCNGG | 1 cut(s) | 20 |
| BmeT110I | CYCGRG | 1 cut(s) | 8 |
| BmgBI | CACGTC | 1 cut(s) | 25 |
| BmrFI | CCNGG | 1 cut(s) | 20 |
| BmsI | GCATC | 1 cut(s) | 331 |
| BpiI | GAAGAC | 1 cut(s) | 162 |
| BpmI | CTGGAG | 1 cut(s) | 116 |
| Bpu10I | CCTNAGC | 1 cut(s) | 222 |
| BpuEI | CTTGAG | 1 cut(s) | 30 |
| Bsa29I | ATCGAT | 1 cut(s) | 414 |
| BsaI | GGTCTC | 1 cut(s) | 181 |
| BsaJI | CCNNGG | 1 cut(s) | 519 |
| BsaWI | WCCGGW | 1 cut(s) | 538 |
| Bse1I | ACTGG | 1 cut(s) | 133 |
| Bse3DI | GCAATG | 1 cut(s) | 351 |
| BseAI | TCCGGA | 1 cut(s) | 538 |
| BseBI | CCWGG | 1 cut(s) | 20 |
| BseCI | ATCGAT | 1 cut(s) | 414 |
| BseDI | CCNNGG | 1 cut(s) | 519 |
| BseGI | GGATG | 2 cut(s) | 99, 127 |
| BseMI | GCAATG | 1 cut(s) | 351 |
| BseMII | CTCAG | 1 cut(s) | 213 |
| BseNI | ACTGG | 1 cut(s) | 133 |
| BseXI | GCAGC | 1 cut(s) | 80 |
| BshVI | ATCGAT | 1 cut(s) | 414 |
| BsiHKAI | GWGCWC | 1 cut(s) | 453 |
| BsiHKCI | CYCGRG | 1 cut(s) | 8 |
| BsiSI | CCGG | 1 cut(s) | 539 |
| BsmAI | GTCTC | 2 cut(s) | 181, 251 |
| Bso31I | GGTCTC | 1 cut(s) | 181 |
| BsoBI | CYCGRG | 1 cut(s) | 8 |
| Bsp1286I | GDGCHC | 1 cut(s) | 453 |
| Bsp13I | TCCGGA | 1 cut(s) | 538 |
| Bsp143I | GATC | 5 cut(s) | 333, 432, 515, 627, 639 |
| BspACI | CCGC | 1 cut(s) | 250 |
| BspCNI | CTCAG | 1 cut(s) | 214 |
| BspDI | ATCGAT | 1 cut(s) | 414 |
| BspEI | TCCGGA | 1 cut(s) | 538 |
| BspHI | TCATGA | 1 cut(s) | 445 |
| BspPI | GGATC | 2 cut(s) | 440, 510 |
| BspTNI | GGTCTC | 1 cut(s) | 181 |
| BsrDI | GCAATG | 1 cut(s) | 351 |
| BsrI | ACTGG | 1 cut(s) | 133 |
| BssECI | CCNNGG | 1 cut(s) | 519 |
| BssMI | GATC | 5 cut(s) | 333, 432, 515, 627, 639 |
| BssSI | CACGAG | 1 cut(s) | 557 |
| Bst2BI | CACGAG | 1 cut(s) | 557 |
| Bst2UI | CCWGG | 1 cut(s) | 20 |
| Bst4CI | ACNGT | 2 cut(s) | 34, 271 |
| BstC8I | GCNNGC | 1 cut(s) | 42 |
| BstDEI | CTNAG | 3 cut(s) | 73, 222, 399 |
| BstDSI | CCRYGG | 1 cut(s) | 519 |
| BstF5I | GGATG | 2 cut(s) | 99, 127 |
| BstKTI | GATC | 5 cut(s) | 336, 435, 518, 630, 642 |
| BstMAI | GTCTC | 2 cut(s) | 181, 251 |
| BstMBI | GATC | 5 cut(s) | 333, 432, 515, 627, 639 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 56, 65, 77, 86, 223, 604 |
| BstNI | CCWGG | 1 cut(s) | 20 |
| BstSCI | CCNGG | 1 cut(s) | 18 |
| BstV1I | GCAGC | 1 cut(s) | 80 |
| BstV2I | GAAGAC | 1 cut(s) | 162 |
| BstX2I | RGATCY | 1 cut(s) | 515 |
| BstYI | RGATCY | 1 cut(s) | 515 |
| Bsu15I | ATCGAT | 1 cut(s) | 414 |
| BsuTUI | ATCGAT | 1 cut(s) | 414 |
| BtgI | CCRYGG | 1 cut(s) | 519 |
| BtrI | CACGTC | 1 cut(s) | 25 |
| BtsCI | GGATG | 2 cut(s) | 99, 127 |
| Cac8I | GCNNGC | 1 cut(s) | 42 |
| CciI | TCATGA | 1 cut(s) | 445 |
| ClaI | ATCGAT | 1 cut(s) | 414 |
| Csp6I | GTAC | 1 cut(s) | 136 |
| CviAII | CATG | 2 cut(s) | 446, 482 |
| CviQI | GTAC | 1 cut(s) | 136 |
| DdeI | CTNAG | 3 cut(s) | 73, 222, 399 |
| DpnI | GATC | 5 cut(s) | 335, 434, 517, 629, 641 |
| DpnII | GATC | 5 cut(s) | 333, 432, 515, 627, 639 |
| DraIII | CACNNNGTG | 1 cut(s) | 615 |
| Ecl136II | GAGCTC | 1 cut(s) | 451 |
| Eco24I | GRGCYC | 1 cut(s) | 453 |
| Eco31I | GGTCTC | 1 cut(s) | 181 |
| Eco53kI | GAGCTC | 1 cut(s) | 451 |
| Eco88I | CYCGRG | 1 cut(s) | 8 |
| EcoICRI | GAGCTC | 1 cut(s) | 451 |
| EcoRI | GAATTC | 1 cut(s) | 317 |
| EcoRII | CCWGG | 1 cut(s) | 18 |
| EcoT22I | ATGCAT | 1 cut(s) | 388 |
| EcoT38I | GRGCYC | 1 cut(s) | 453 |
| FaeI | CATG | 2 cut(s) | 449, 485 |
| FatI | CATG | 2 cut(s) | 445, 481 |
| FauNDI | CATATG | 1 cut(s) | 117 |
| Fnu4HI | GCNGC | 1 cut(s) | 69 |
| FokI | GGATG | 2 cut(s) | 86, 134 |
| FriOI | GRGCYC | 1 cut(s) | 453 |
| Fsp4HI | GCNGC | 1 cut(s) | 69 |
| FspBI | CTAG | 3 cut(s) | 15, 227, 643 |
| GluI | GCNGC | 1 cut(s) | 69 |
| GsuI | CTGGAG | 1 cut(s) | 116 |
| HapII | CCGG | 1 cut(s) | 539 |
| Hin1II | CATG | 2 cut(s) | 449, 485 |
| HindIII | AAGCTT | 1 cut(s) | 48 |
| HinfI | GANTC | 6 cut(s) | 4, 109, 125, 209, 411, 542 |
| HpaII | CCGG | 1 cut(s) | 539 |
| HphI | GGTGA | 1 cut(s) | 564 |
| Hpy188I | TCNGA | 1 cut(s) | 289 |
| Hpy188III | TCNNGA | 9 cut(s) | 8, 221, 265, 275, 446, 513, 539, 559, 631 |
| HpyAV | CCTTC | 2 cut(s) | 159, 382 |
| HpyCH4III | ACNGT | 2 cut(s) | 34, 271 |
| HpyCH4IV | ACGT | 2 cut(s) | 24, 201 |
| HpyCH4V | TGCA | 3 cut(s) | 344, 386, 425 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 56, 65, 77, 86, 223, 604 |
| HpyF3I | CTNAG | 3 cut(s) | 73, 222, 399 |
| HpySE526I | ACGT | 2 cut(s) | 24, 201 |
| Hsp92II | CATG | 2 cut(s) | 449, 485 |
| Kpn2I | TCCGGA | 1 cut(s) | 538 |
| Kzo9I | GATC | 5 cut(s) | 333, 432, 515, 627, 639 |
| LmnI | GCTCC | 1 cut(s) | 135 |
| LpnPI | CCDG | 6 cut(s) | 5, 32, 146, 175, 234, 552 |
| Lsp1109I | GCAGC | 1 cut(s) | 80 |
| LweI | GCATC | 1 cut(s) | 331 |
| MaeI | CTAG | 3 cut(s) | 15, 227, 643 |
| MaeII | ACGT | 2 cut(s) | 24, 201 |
| MaeIII | GTNAC | 2 cut(s) | 206, 570 |
| MalI | GATC | 5 cut(s) | 335, 434, 517, 629, 641 |
| MboI | GATC | 5 cut(s) | 333, 432, 515, 627, 639 |
| MboII | GAAGA | 6 cut(s) | 164, 167, 197, 511, 574, 637 |
| MflI | RGATCY | 1 cut(s) | 515 |
| MhlI | GDGCHC | 1 cut(s) | 453 |
| MluCI | AATT | 3 cut(s) | 317, 508, 547 |
| MlyI | GAGTC | 2 cut(s) | 103, 203 |
| MnlI | CCTC | 1 cut(s) | 70 |
| Mph1103I | ATGCAT | 1 cut(s) | 388 |
| MroI | TCCGGA | 1 cut(s) | 538 |
| MroXI | GAANNNNTTC | 2 cut(s) | 294, 534 |
| MseI | TTAA | 2 cut(s) | 303, 311 |
| MslI | CAYNNNNRTG | 2 cut(s) | 104, 120 |
| MspI | CCGG | 1 cut(s) | 539 |
| MspR9I | CCNGG | 1 cut(s) | 20 |
| MvaI | CCWGG | 1 cut(s) | 20 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 56, 65, 77, 86, 223, 604 |
| NdeI | CATATG | 1 cut(s) | 117 |
| NdeII | GATC | 5 cut(s) | 333, 432, 515, 627, 639 |
| NlaIII | CATG | 2 cut(s) | 449, 485 |
| NmuCI | GTSAC | 2 cut(s) | 206, 570 |
| NsiI | ATGCAT | 1 cut(s) | 388 |
| PaeR7I | CTCGAG | 1 cut(s) | 8 |
| PagI | TCATGA | 1 cut(s) | 445 |
| PdmI | GAANNNNTTC | 2 cut(s) | 294, 534 |
| PfeI | GAWTC | 4 cut(s) | 4, 125, 411, 542 |
| PkrI | GCNGC | 1 cut(s) | 70 |
| PleI | GAGTC | 2 cut(s) | 103, 203 |
| PpsI | GAGTC | 2 cut(s) | 103, 203 |
| PsiI | TTATAA | 1 cut(s) | 552 |
| Psp124BI | GAGCTC | 1 cut(s) | 453 |
| Psp6I | CCWGG | 1 cut(s) | 18 |
| PspGI | CCWGG | 1 cut(s) | 18 |
| PsuI | RGATCY | 1 cut(s) | 515 |
| RsaI | GTAC | 1 cut(s) | 137 |
| RsaNI | GTAC | 1 cut(s) | 136 |
| RseI | CAYNNNNRTG | 2 cut(s) | 104, 120 |
| SacI | GAGCTC | 1 cut(s) | 453 |
| SaqAI | TTAA | 2 cut(s) | 303, 311 |
| SatI | GCNGC | 1 cut(s) | 69 |
| Sau3AI | GATC | 5 cut(s) | 333, 432, 515, 627, 639 |
| SchI | GAGTC | 2 cut(s) | 103, 203 |
| ScrFI | CCNGG | 1 cut(s) | 20 |
| SduI | GDGCHC | 1 cut(s) | 453 |
| SfaNI | GCATC | 1 cut(s) | 331 |
| Sfr274I | CTCGAG | 1 cut(s) | 8 |
| SlaI | CTCGAG | 1 cut(s) | 8 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 104, 120 |
| SmlI | CTYRAG | 2 cut(s) | 8, 45 |
| SmoI | CTYRAG | 2 cut(s) | 8, 45 |
| Sse9I | AATT | 3 cut(s) | 317, 508, 547 |
| SsiI | CCGC | 1 cut(s) | 250 |
| SspMI | CTAG | 3 cut(s) | 15, 227, 643 |
| SstI | GAGCTC | 1 cut(s) | 453 |
| StyD4I | CCNGG | 1 cut(s) | 18 |
| TaaI | ACNGT | 2 cut(s) | 34, 271 |
| TaiI | ACGT | 2 cut(s) | 27, 204 |
| TaqI | TCGA | 4 cut(s) | 9, 409, 414, 512 |
| TasI | AATT | 3 cut(s) | 317, 508, 547 |
| TfiI | GAWTC | 4 cut(s) | 4, 125, 411, 542 |
| Tru1I | TTAA | 2 cut(s) | 303, 311 |
| Tru9I | TTAA | 2 cut(s) | 303, 311 |
| TseFI | GTSAC | 2 cut(s) | 206, 570 |
| TseI | GCWGC | 1 cut(s) | 68 |
| Tsp45I | GTSAC | 2 cut(s) | 206, 570 |
| TspDTI | ATGAA | 4 cut(s) | 161, 165, 434, 479 |
| TspGWI | ACGGA | 3 cut(s) | 194, 445, 508 |
| XapI | RAATTY | 1 cut(s) | 317 |
| XhoI | CTCGAG | 1 cut(s) | 8 |
| XmnI | GAANNNNTTC | 2 cut(s) | 294, 534 |
| XspI | CTAG | 3 cut(s) | 15, 227, 643 |
| Zsp2I | ATGCAT | 1 cut(s) | 388 |