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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 729 |
| AciI | CCGC | 3 cut(s) | 79, 361, 763 |
| AclWI | GGATC | 2 cut(s) | 551, 621 |
| AcsI | RAATTY | 1 cut(s) | 428 |
| AcuI | CTGAAG | 1 cut(s) | 702 |
| AfaI | GTAC | 1 cut(s) | 248 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 680 |
| AflIII | ACRYGT | 1 cut(s) | 487 |
| AgsI | TTSAA | 2 cut(s) | 376, 565 |
| AjiI | CACGTC | 1 cut(s) | 136 |
| AjnI | CCWGG | 1 cut(s) | 630 |
| AluBI | AGCT | 2 cut(s) | 155, 572 |
| AluI | AGCT | 2 cut(s) | 155, 572 |
| Alw26I | GTCTC | 1 cut(s) | 496 |
| AlwI | GGATC | 2 cut(s) | 551, 621 |
| Ama87I | CYCGRG | 1 cut(s) | 119 |
| AoxI | GGCC | 2 cut(s) | 93, 669 |
| ApaI | GGGCCC | 1 cut(s) | 673 |
| ApeKI | GCWGC | 1 cut(s) | 179 |
| ApoI | RAATTY | 1 cut(s) | 428 |
| AseI | ATTAAT | 2 cut(s) | 422, 500 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 405 |
| AspS9I | GGNCC | 3 cut(s) | 669, 670, 731 |
| AvaI | CYCGRG | 1 cut(s) | 119 |
| AvaII | GGWCC | 1 cut(s) | 731 |
| BaeGI | GKGCMC | 1 cut(s) | 673 |
| BanII | GRGCYC | 2 cut(s) | 673, 687 |
| BbsI | GAAGAC | 1 cut(s) | 270 |
| BbvI | GCAGC | 1 cut(s) | 191 |
| BccI | CCATC | 3 cut(s) | 92, 215, 342 |
| BciT130I | CCWGG | 1 cut(s) | 632 |
| BcoDI | GTCTC | 1 cut(s) | 496 |
| BfaI | CTAG | 2 cut(s) | 107, 338 |
| BfmI | CTRYAG | 1 cut(s) | 534 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 188 |
| BisI | GCNGC | 1 cut(s) | 180 |
| BlpI | GCTNAGC | 1 cut(s) | 125 |
| BlsI | GCNGC | 1 cut(s) | 181 |
| Bme1390I | CCNGG | 1 cut(s) | 632 |
| Bme18I | GGWCC | 1 cut(s) | 731 |
| BmeT110I | CYCGRG | 1 cut(s) | 119 |
| BmgBI | CACGTC | 1 cut(s) | 136 |
| BmgT120I | GGNCC | 3 cut(s) | 669, 670, 731 |
| BmiI | GGNNCC | 3 cut(s) | 671, 672, 686 |
| BmrFI | CCNGG | 1 cut(s) | 632 |
| BmsI | GCATC | 3 cut(s) | 94, 442, 703 |
| BpiI | GAAGAC | 1 cut(s) | 270 |
| BpmI | CTGGAG | 1 cut(s) | 227 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 125 |
| BpuEI | CTTGAG | 1 cut(s) | 74 |
| BsaJI | CCNNGG | 1 cut(s) | 630 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 680 |
| Bse1I | ACTGG | 2 cut(s) | 49, 244 |
| BseBI | CCWGG | 1 cut(s) | 632 |
| BseDI | CCNNGG | 1 cut(s) | 630 |
| BseGI | GGATG | 3 cut(s) | 238, 600, 718 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 680 |
| BseMII | CTCAG | 1 cut(s) | 307 |
| BseNI | ACTGG | 2 cut(s) | 49, 244 |
| BseSI | GKGCMC | 1 cut(s) | 673 |
| BseXI | GCAGC | 1 cut(s) | 191 |
| BshFI | GGCC | 2 cut(s) | 95, 671 |
| BsiHKCI | CYCGRG | 1 cut(s) | 119 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 680 |
| BsmAI | GTCTC | 1 cut(s) | 496 |
| BsnI | GGCC | 2 cut(s) | 95, 671 |
| BsoBI | CYCGRG | 1 cut(s) | 119 |
| Bsp120I | GGGCCC | 1 cut(s) | 669 |
| Bsp1286I | GDGCHC | 2 cut(s) | 673, 687 |
| Bsp143I | GATC | 3 cut(s) | 444, 543, 626 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 125 |
| BspACI | CCGC | 3 cut(s) | 79, 361, 763 |
| BspANI | GGCC | 2 cut(s) | 95, 671 |
| BspCNI | CTCAG | 1 cut(s) | 306 |
| BspHI | TCATGA | 1 cut(s) | 556 |
| BspLI | GGNNCC | 3 cut(s) | 671, 672, 686 |
| BspMAI | CTGCAG | 1 cut(s) | 538 |
| BspPI | GGATC | 2 cut(s) | 551, 621 |
| BsrI | ACTGG | 2 cut(s) | 49, 244 |
| BssECI | CCNNGG | 1 cut(s) | 630 |
| BssMI | GATC | 3 cut(s) | 444, 543, 626 |
| Bst2UI | CCWGG | 1 cut(s) | 632 |
| Bst4CI | ACNGT | 1 cut(s) | 145 |
| BstC8I | GCNNGC | 2 cut(s) | 83, 153 |
| BstDEI | CTNAG | 6 cut(s) | 125, 184, 293, 510, 675, 707 |
| BstEII | GGTNACC | 1 cut(s) | 758 |
| BstF5I | GGATG | 3 cut(s) | 238, 600, 718 |
| BstKTI | GATC | 3 cut(s) | 447, 546, 629 |
| BstMAI | GTCTC | 1 cut(s) | 496 |
| BstMBI | GATC | 3 cut(s) | 444, 543, 626 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 176, 188, 197, 691 |
| BstNI | CCWGG | 1 cut(s) | 632 |
| BstNSI | RCATGY | 1 cut(s) | 491 |
| BstPI | GGTNACC | 1 cut(s) | 758 |
| BstSCI | CCNGG | 1 cut(s) | 630 |
| BstSFI | CTRYAG | 1 cut(s) | 534 |
| BstSLI | GKGCMC | 1 cut(s) | 673 |
| BstV1I | GCAGC | 1 cut(s) | 191 |
| BstV2I | GAAGAC | 1 cut(s) | 270 |
| BstX2I | RGATCY | 1 cut(s) | 626 |
| BstYI | RGATCY | 1 cut(s) | 626 |
| BsuRI | GGCC | 2 cut(s) | 95, 671 |
| BtgZI | GCGATG | 1 cut(s) | 470 |
| BtrI | CACGTC | 1 cut(s) | 136 |
| BtsCI | GGATG | 3 cut(s) | 238, 600, 718 |
| Cac8I | GCNNGC | 2 cut(s) | 83, 153 |
| CciI | TCATGA | 1 cut(s) | 556 |
| Cfr13I | GGNCC | 3 cut(s) | 669, 670, 731 |
| Csp6I | GTAC | 1 cut(s) | 247 |
| CviAII | CATG | 5 cut(s) | 131, 317, 488, 557, 593 |
| CviQI | GTAC | 1 cut(s) | 247 |
| DdeI | CTNAG | 6 cut(s) | 125, 184, 293, 510, 675, 707 |
| DpnI | GATC | 3 cut(s) | 446, 545, 628 |
| DpnII | GATC | 3 cut(s) | 444, 543, 626 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 729 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 729 |
| EciI | GGCGGA | 1 cut(s) | 68 |
| Eco24I | GRGCYC | 2 cut(s) | 673, 687 |
| Eco32I | GATATC | 1 cut(s) | 56 |
| Eco47I | GGWCC | 1 cut(s) | 731 |
| Eco57I | CTGAAG | 1 cut(s) | 702 |
| Eco88I | CYCGRG | 1 cut(s) | 119 |
| Eco91I | GGTNACC | 1 cut(s) | 758 |
| EcoO109I | RGGNCCY | 1 cut(s) | 670 |
| EcoO65I | GGTNACC | 1 cut(s) | 758 |
| EcoRI | GAATTC | 1 cut(s) | 428 |
| EcoRII | CCWGG | 1 cut(s) | 630 |
| EcoRV | GATATC | 1 cut(s) | 56 |
| EcoT38I | GRGCYC | 2 cut(s) | 673, 687 |
| FaeI | CATG | 5 cut(s) | 134, 320, 491, 560, 596 |
| FatI | CATG | 5 cut(s) | 130, 316, 487, 556, 592 |
| FauNDI | CATATG | 1 cut(s) | 228 |
| Fnu4HI | GCNGC | 1 cut(s) | 180 |
| FokI | GGATG | 3 cut(s) | 245, 587, 725 |
| FriOI | GRGCYC | 2 cut(s) | 673, 687 |
| Fsp4HI | GCNGC | 1 cut(s) | 180 |
| FspBI | CTAG | 2 cut(s) | 107, 338 |
| GluI | GCNGC | 1 cut(s) | 180 |
| GsuI | CTGGAG | 1 cut(s) | 227 |
| HaeIII | GGCC | 2 cut(s) | 95, 671 |
| Hin1II | CATG | 5 cut(s) | 134, 320, 491, 560, 596 |
| HinfI | GANTC | 6 cut(s) | 102, 115, 220, 236, 320, 653 |
| Hpy188I | TCNGA | 1 cut(s) | 296 |
| Hpy188III | TCNNGA | 9 cut(s) | 51, 71, 332, 386, 557, 624, 650, 720, 734 |
| HpyAV | CCTTC | 2 cut(s) | 270, 749 |
| HpyCH4III | ACNGT | 1 cut(s) | 145 |
| HpyCH4IV | ACGT | 3 cut(s) | 135, 312, 724 |
| HpyCH4V | TGCA | 2 cut(s) | 497, 536 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 176, 188, 197, 691 |
| HpyF3I | CTNAG | 6 cut(s) | 125, 184, 293, 510, 675, 707 |
| HpySE526I | ACGT | 3 cut(s) | 135, 312, 724 |
| Hsp92II | CATG | 5 cut(s) | 134, 320, 491, 560, 596 |
| Kzo9I | GATC | 3 cut(s) | 444, 543, 626 |
| LmnI | GCTCC | 3 cut(s) | 34, 569, 690 |
| Lsp1109I | GCAGC | 1 cut(s) | 191 |
| LweI | GCATC | 3 cut(s) | 94, 442, 703 |
| MaeI | CTAG | 2 cut(s) | 107, 338 |
| MaeII | ACGT | 3 cut(s) | 135, 312, 724 |
| MaeIII | GTNAC | 3 cut(s) | 308, 529, 758 |
| MalI | GATC | 3 cut(s) | 446, 545, 628 |
| MboI | GATC | 3 cut(s) | 444, 543, 626 |
| MboII | GAAGA | 1 cut(s) | 275 |
| MflI | RGATCY | 1 cut(s) | 626 |
| MhlI | GDGCHC | 2 cut(s) | 673, 687 |
| MluCI | AATT | 5 cut(s) | 17, 428, 522, 619, 658 |
| MlyI | GAGTC | 2 cut(s) | 214, 314 |
| MnlI | CCTC | 2 cut(s) | 181, 368 |
| MroXI | GAANNNNTTC | 1 cut(s) | 405 |
| MseI | TTAA | 3 cut(s) | 414, 422, 500 |
| MslI | CAYNNNNRTG | 3 cut(s) | 215, 231, 605 |
| MspR9I | CCNGG | 1 cut(s) | 632 |
| MvaI | CCWGG | 1 cut(s) | 632 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 176, 188, 197, 691 |
| NdeI | CATATG | 1 cut(s) | 228 |
| NdeII | GATC | 3 cut(s) | 444, 543, 626 |
| NlaIII | CATG | 5 cut(s) | 134, 320, 491, 560, 596 |
| NlaIV | GGNNCC | 3 cut(s) | 671, 672, 686 |
| NspI | RCATGY | 1 cut(s) | 491 |
| PagI | TCATGA | 1 cut(s) | 556 |
| PciI | ACATGT | 1 cut(s) | 487 |
| PdmI | GAANNNNTTC | 1 cut(s) | 405 |
| PfeI | GAWTC | 4 cut(s) | 102, 115, 236, 653 |
| PkrI | GCNGC | 1 cut(s) | 181 |
| PleI | GAGTC | 2 cut(s) | 214, 314 |
| PpsI | GAGTC | 2 cut(s) | 214, 314 |
| PscI | ACATGT | 1 cut(s) | 487 |
| PshBI | ATTAAT | 2 cut(s) | 422, 500 |
| Psp6I | CCWGG | 1 cut(s) | 630 |
| PspEI | GGTNACC | 1 cut(s) | 758 |
| PspGI | CCWGG | 1 cut(s) | 630 |
| PspN4I | GGNNCC | 3 cut(s) | 671, 672, 686 |
| PspOMI | GGGCCC | 1 cut(s) | 669 |
| PspPI | GGNCC | 3 cut(s) | 669, 670, 731 |
| PstI | CTGCAG | 1 cut(s) | 538 |
| PsuI | RGATCY | 1 cut(s) | 626 |
| RsaI | GTAC | 1 cut(s) | 248 |
| RsaNI | GTAC | 1 cut(s) | 247 |
| RseI | CAYNNNNRTG | 3 cut(s) | 215, 231, 605 |
| SaqAI | TTAA | 3 cut(s) | 414, 422, 500 |
| SatI | GCNGC | 1 cut(s) | 180 |
| Sau3AI | GATC | 3 cut(s) | 444, 543, 626 |
| Sau96I | GGNCC | 3 cut(s) | 669, 670, 731 |
| SchI | GAGTC | 2 cut(s) | 214, 314 |
| ScrFI | CCNGG | 1 cut(s) | 632 |
| SduI | GDGCHC | 2 cut(s) | 673, 687 |
| SetI | ASST | 9 cut(s) | 65, 138, 157, 315, 339, 554, 574, 727, 760 |
| SfaNI | GCATC | 3 cut(s) | 94, 442, 703 |
| SfcI | CTRYAG | 1 cut(s) | 534 |
| SinI | GGWCC | 1 cut(s) | 731 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 215, 231, 605 |
| SmlI | CTYRAG | 1 cut(s) | 89 |
| SmoI | CTYRAG | 1 cut(s) | 89 |
| Sse9I | AATT | 5 cut(s) | 17, 428, 522, 619, 658 |
| SsiI | CCGC | 3 cut(s) | 79, 361, 763 |
| SspMI | CTAG | 2 cut(s) | 107, 338 |
| StyD4I | CCNGG | 1 cut(s) | 630 |
| TaaI | ACNGT | 1 cut(s) | 145 |
| TaiI | ACGT | 3 cut(s) | 138, 315, 727 |
| TaqI | TCGA | 2 cut(s) | 520, 623 |
| TasI | AATT | 5 cut(s) | 17, 428, 522, 619, 658 |
| TfiI | GAWTC | 4 cut(s) | 102, 115, 236, 653 |
| Tru1I | TTAA | 3 cut(s) | 414, 422, 500 |
| Tru9I | TTAA | 3 cut(s) | 414, 422, 500 |
| TseI | GCWGC | 1 cut(s) | 179 |
| TspDTI | ATGAA | 5 cut(s) | 249, 272, 276, 545, 590 |
| TspGWI | ACGGA | 1 cut(s) | 556 |
| VpaK11BI | GGWCC | 1 cut(s) | 731 |
| VspI | ATTAAT | 2 cut(s) | 422, 500 |
| XapI | RAATTY | 1 cut(s) | 428 |
| XceI | RCATGY | 1 cut(s) | 491 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 280 |
| XmnI | GAANNNNTTC | 1 cut(s) | 405 |
| XspI | CTAG | 2 cut(s) | 107, 338 |