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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 292 |
| AclWI | GGATC | 2 cut(s) | 76, 215 |
| AcsI | RAATTY | 1 cut(s) | 23 |
| AfaI | GTAC | 3 cut(s) | 69, 206, 344 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 64, 271 |
| AgsI | TTSAA | 4 cut(s) | 23, 218, 320, 328 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 328 |
| AjnI | CCWGG | 2 cut(s) | 33, 62 |
| AluBI | AGCT | 4 cut(s) | 19, 132, 230, 382 |
| AluI | AGCT | 4 cut(s) | 19, 132, 230, 382 |
| AlwI | GGATC | 2 cut(s) | 76, 215 |
| AoxI | GGCC | 2 cut(s) | 156, 288 |
| ApaI | GGGCCC | 1 cut(s) | 292 |
| ApeKI | GCWGC | 2 cut(s) | 29, 129 |
| ApoI | RAATTY | 1 cut(s) | 23 |
| AspLEI | GCGC | 1 cut(s) | 193 |
| AspS9I | GGNCC | 2 cut(s) | 288, 289 |
| AsuC2I | CCSGG | 1 cut(s) | 46 |
| AsuHPI | GGTGA | 2 cut(s) | 254, 286 |
| BaeGI | GKGCMC | 1 cut(s) | 292 |
| BanII | GRGCYC | 1 cut(s) | 292 |
| BbvI | GCAGC | 2 cut(s) | 16, 141 |
| BccI | CCATC | 2 cut(s) | 93, 122 |
| BciT130I | CCWGG | 2 cut(s) | 35, 64 |
| BcnI | CCSGG | 1 cut(s) | 46 |
| BfaI | CTAG | 1 cut(s) | 71 |
| BfmI | CTRYAG | 1 cut(s) | 458 |
| BfoI | RGCGCY | 1 cut(s) | 194 |
| BisI | GCNGC | 2 cut(s) | 30, 130 |
| BlsI | GCNGC | 2 cut(s) | 31, 131 |
| BmcAI | AGTACT | 1 cut(s) | 206 |
| Bme1390I | CCNGG | 3 cut(s) | 35, 46, 64 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 328 |
| BmgT120I | GGNCC | 2 cut(s) | 288, 289 |
| BmiI | GGNNCC | 1 cut(s) | 290 |
| BmrFI | CCNGG | 3 cut(s) | 35, 46, 64 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 116, 148 |
| BpuEI | CTTGAG | 2 cut(s) | 126, 265 |
| BpuMI | CCSGG | 1 cut(s) | 46 |
| BsaJI | CCNNGG | 3 cut(s) | 33, 63, 284 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 64, 271 |
| BseBI | CCWGG | 2 cut(s) | 35, 64 |
| BseDI | CCNNGG | 3 cut(s) | 33, 63, 284 |
| BseGI | GGATG | 1 cut(s) | 134 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 64, 271 |
| BseMII | CTCAG | 4 cut(s) | 302, 386, 393, 442 |
| BseSI | GKGCMC | 1 cut(s) | 292 |
| BseXI | GCAGC | 2 cut(s) | 16, 141 |
| BshFI | GGCC | 2 cut(s) | 158, 290 |
| BsiSI | CCGG | 1 cut(s) | 45 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 64, 271 |
| BsmI | GAATGC | 1 cut(s) | 244 |
| BsnI | GGCC | 2 cut(s) | 158, 290 |
| Bsp120I | GGGCCC | 1 cut(s) | 288 |
| Bsp1286I | GDGCHC | 1 cut(s) | 292 |
| Bsp143I | GATC | 3 cut(s) | 81, 145, 220 |
| BspACI | CCGC | 1 cut(s) | 292 |
| BspANI | GGCC | 2 cut(s) | 158, 290 |
| BspCNI | CTCAG | 4 cut(s) | 303, 385, 394, 441 |
| BspLI | GGNNCC | 1 cut(s) | 290 |
| BspMAI | CTGCAG | 1 cut(s) | 462 |
| BspPI | GGATC | 2 cut(s) | 76, 215 |
| BssECI | CCNNGG | 3 cut(s) | 33, 63, 284 |
| BssMI | GATC | 3 cut(s) | 81, 145, 220 |
| BssT1I | CCWWGG | 1 cut(s) | 284 |
| Bst2UI | CCWGG | 2 cut(s) | 35, 64 |
| Bst4CI | ACNGT | 2 cut(s) | 214, 274 |
| Bst6I | CTCTTC | 1 cut(s) | 117 |
| BstC8I | GCNNGC | 1 cut(s) | 292 |
| BstDEI | CTNAG | 4 cut(s) | 311, 372, 402, 428 |
| BstF5I | GGATG | 1 cut(s) | 134 |
| BstH2I | RGCGCY | 1 cut(s) | 194 |
| BstHHI | GCGC | 1 cut(s) | 193 |
| BstKTI | GATC | 3 cut(s) | 84, 148, 223 |
| BstMBI | GATC | 3 cut(s) | 81, 145, 220 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 11 |
| BstNI | CCWGG | 2 cut(s) | 35, 64 |
| BstNSI | RCATGY | 1 cut(s) | 454 |
| BstSCI | CCNGG | 3 cut(s) | 33, 44, 62 |
| BstSFI | CTRYAG | 1 cut(s) | 458 |
| BstSLI | GKGCMC | 1 cut(s) | 292 |
| BstV1I | GCAGC | 2 cut(s) | 16, 141 |
| BstX2I | RGATCY | 2 cut(s) | 81, 220 |
| BstYI | RGATCY | 2 cut(s) | 81, 220 |
| BsuRI | GGCC | 2 cut(s) | 158, 290 |
| BtsCI | GGATG | 1 cut(s) | 134 |
| BtsIMutI | CAGTG | 1 cut(s) | 339 |
| Cac8I | GCNNGC | 1 cut(s) | 292 |
| CfoI | GCGC | 1 cut(s) | 193 |
| Cfr13I | GGNCC | 2 cut(s) | 288, 289 |
| Csp6I | GTAC | 3 cut(s) | 68, 205, 343 |
| CviAII | CATG | 3 cut(s) | 160, 440, 451 |
| CviJI | RGCY | 6 cut(s) | 19, 132, 158, 230, 290, 382 |
| CviKI_1 | RGCY | 6 cut(s) | 19, 132, 158, 230, 290, 382 |
| CviQI | GTAC | 3 cut(s) | 68, 205, 343 |
| DdeI | CTNAG | 4 cut(s) | 311, 372, 402, 428 |
| DpnI | GATC | 3 cut(s) | 83, 147, 222 |
| DpnII | GATC | 3 cut(s) | 81, 145, 220 |
| DriI | GACNNNNNGTC | 1 cut(s) | 328 |
| Eam1104I | CTCTTC | 1 cut(s) | 117 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 328 |
| EarI | CTCTTC | 1 cut(s) | 117 |
| Eco130I | CCWWGG | 1 cut(s) | 284 |
| Eco24I | GRGCYC | 1 cut(s) | 292 |
| EcoO109I | RGGNCCY | 1 cut(s) | 288 |
| EcoRII | CCWGG | 2 cut(s) | 33, 62 |
| EcoT14I | CCWWGG | 1 cut(s) | 284 |
| EcoT38I | GRGCYC | 1 cut(s) | 292 |
| ErhI | CCWWGG | 1 cut(s) | 284 |
| FaeI | CATG | 3 cut(s) | 163, 443, 454 |
| FaiI | YATR | 6 cut(s) | 161, 297, 411, 413, 441, 452 |
| FatI | CATG | 3 cut(s) | 159, 439, 450 |
| FauI | CCCGC | 1 cut(s) | 299 |
| FauNDI | CATATG | 1 cut(s) | 411 |
| Fnu4HI | GCNGC | 2 cut(s) | 30, 130 |
| FokI | GGATG | 1 cut(s) | 121 |
| FriOI | GRGCYC | 1 cut(s) | 292 |
| Fsp4HI | GCNGC | 2 cut(s) | 30, 130 |
| FspBI | CTAG | 1 cut(s) | 71 |
| GlaI | GCGC | 1 cut(s) | 192 |
| GluI | GCNGC | 2 cut(s) | 30, 130 |
| HaeII | RGCGCY | 1 cut(s) | 194 |
| HaeIII | GGCC | 2 cut(s) | 158, 290 |
| HapII | CCGG | 1 cut(s) | 45 |
| HhaI | GCGC | 1 cut(s) | 193 |
| Hin1II | CATG | 3 cut(s) | 163, 443, 454 |
| Hin6I | GCGC | 1 cut(s) | 191 |
| HinP1I | GCGC | 1 cut(s) | 191 |
| HindIII | AAGCTT | 1 cut(s) | 17 |
| HinfI | GANTC | 5 cut(s) | 100, 277, 304, 316, 424 |
| HpaII | CCGG | 1 cut(s) | 45 |
| HphI | GGTGA | 2 cut(s) | 254, 286 |
| Hpy166II | GTNNAC | 1 cut(s) | 303 |
| Hpy188I | TCNGA | 3 cut(s) | 312, 362, 375 |
| Hpy188III | TCNNGA | 5 cut(s) | 89, 143, 182, 235, 320 |
| Hpy8I | GTNNAC | 1 cut(s) | 303 |
| Hpy99I | CGWCG | 1 cut(s) | 177 |
| HpyCH4III | ACNGT | 2 cut(s) | 214, 274 |
| HpyCH4V | TGCA | 1 cut(s) | 460 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 11 |
| HpyF3I | CTNAG | 4 cut(s) | 311, 372, 402, 428 |
| Hsp92II | CATG | 3 cut(s) | 163, 443, 454 |
| HspAI | GCGC | 1 cut(s) | 191 |
| Kzo9I | GATC | 3 cut(s) | 81, 145, 220 |
| LmnI | GCTCC | 1 cut(s) | 459 |
| Lsp1109I | GCAGC | 2 cut(s) | 16, 141 |
| MaeI | CTAG | 1 cut(s) | 71 |
| MalI | GATC | 3 cut(s) | 83, 147, 222 |
| MboI | GATC | 3 cut(s) | 81, 145, 220 |
| MboII | GAAGA | 4 cut(s) | 61, 134, 230, 272 |
| MflI | RGATCY | 2 cut(s) | 81, 220 |
| MhlI | GDGCHC | 1 cut(s) | 292 |
| MluCI | AATT | 4 cut(s) | 23, 52, 346, 363 |
| MlyI | GAGTC | 2 cut(s) | 298, 418 |
| MmeI | TCCRAC | 1 cut(s) | 396 |
| MnlI | CCTC | 6 cut(s) | 148, 181, 306, 379, 397, 454 |
| MseI | TTAA | 1 cut(s) | 209 |
| MslI | CAYNNNNRTG | 1 cut(s) | 183 |
| MspI | CCGG | 1 cut(s) | 45 |
| MspR9I | CCNGG | 3 cut(s) | 35, 46, 64 |
| Mva1269I | GAATGC | 1 cut(s) | 244 |
| MvaI | CCWGG | 2 cut(s) | 35, 64 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 11 |
| NciI | CCSGG | 1 cut(s) | 46 |
| NdeI | CATATG | 1 cut(s) | 411 |
| NdeII | GATC | 3 cut(s) | 81, 145, 220 |
| NlaIII | CATG | 3 cut(s) | 163, 443, 454 |
| NlaIV | GGNNCC | 1 cut(s) | 290 |
| NspI | RCATGY | 1 cut(s) | 454 |
| PctI | GAATGC | 1 cut(s) | 244 |
| PfeI | GAWTC | 3 cut(s) | 100, 277, 316 |
| PkrI | GCNGC | 2 cut(s) | 31, 131 |
| PleI | GAGTC | 2 cut(s) | 298, 418 |
| PpsI | GAGTC | 2 cut(s) | 298, 418 |
| Psp6I | CCWGG | 2 cut(s) | 33, 62 |
| PspGI | CCWGG | 2 cut(s) | 33, 62 |
| PspN4I | GGNNCC | 1 cut(s) | 290 |
| PspOMI | GGGCCC | 1 cut(s) | 288 |
| PspPI | GGNCC | 2 cut(s) | 288, 289 |
| PstI | CTGCAG | 1 cut(s) | 462 |
| PsuI | RGATCY | 2 cut(s) | 81, 220 |
| RsaI | GTAC | 3 cut(s) | 69, 206, 344 |
| RsaNI | GTAC | 3 cut(s) | 68, 205, 343 |
| RseI | CAYNNNNRTG | 1 cut(s) | 183 |
| SaqAI | TTAA | 1 cut(s) | 209 |
| SatI | GCNGC | 2 cut(s) | 30, 130 |
| Sau3AI | GATC | 3 cut(s) | 81, 145, 220 |
| Sau96I | GGNCC | 2 cut(s) | 288, 289 |
| ScaI | AGTACT | 1 cut(s) | 206 |
| SchI | GAGTC | 2 cut(s) | 298, 418 |
| ScrFI | CCNGG | 3 cut(s) | 35, 46, 64 |
| SduI | GDGCHC | 1 cut(s) | 292 |
| SetI | ASST | 7 cut(s) | 21, 60, 65, 134, 232, 371, 384 |
| SfcI | CTRYAG | 1 cut(s) | 458 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 183 |
| SmlI | CTYRAG | 2 cut(s) | 141, 244 |
| SmoI | CTYRAG | 2 cut(s) | 141, 244 |
| Sse9I | AATT | 4 cut(s) | 23, 52, 346, 363 |
| SsiI | CCGC | 1 cut(s) | 292 |
| SspMI | CTAG | 1 cut(s) | 71 |
| StyD4I | CCNGG | 3 cut(s) | 33, 44, 62 |
| StyI | CCWWGG | 1 cut(s) | 284 |
| TaaI | ACNGT | 2 cut(s) | 214, 274 |
| TasI | AATT | 4 cut(s) | 23, 52, 346, 363 |
| TatI | WGTACW | 2 cut(s) | 204, 342 |
| TfiI | GAWTC | 3 cut(s) | 100, 277, 316 |
| Tru1I | TTAA | 1 cut(s) | 209 |
| Tru9I | TTAA | 1 cut(s) | 209 |
| TscAI | CASTG | 1 cut(s) | 339 |
| TseI | GCWGC | 2 cut(s) | 29, 129 |
| TspDTI | ATGAA | 3 cut(s) | 157, 392, 428 |
| TspGWI | ACGGA | 1 cut(s) | 213 |
| TspRI | CASTG | 1 cut(s) | 339 |
| XapI | RAATTY | 1 cut(s) | 23 |
| XceI | RCATGY | 1 cut(s) | 454 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 85 |
| XspI | CTAG | 1 cut(s) | 71 |
| ZrmI | AGTACT | 1 cut(s) | 206 |