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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1077 |
| Acc65I | GGTACC | 1 cut(s) | 1265 |
| AccB1I | GGYRCC | 3 cut(s) | 1190, 1265, 1346 |
| AccII | CGCG | 2 cut(s) | 1017, 1223 |
| AccIII | TCCGGA | 1 cut(s) | 997 |
| AciI | CCGC | 4 cut(s) | 335, 394, 676, 1269 |
| AclWI | GGATC | 2 cut(s) | 25, 969 |
| AcoI | YGGCCR | 4 cut(s) | 71, 91, 366, 1177 |
| AcsI | RAATTY | 2 cut(s) | 776, 1414 |
| AfaI | GTAC | 2 cut(s) | 135, 1267 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 69, 96, 135, 375, 1291, 1295, 1326 |
| AflIII | ACRYGT | 2 cut(s) | 284, 1221 |
| AgsI | TTSAA | 4 cut(s) | 22, 691, 1228, 1382 |
| AjiI | CACGTC | 5 cut(s) | 226, 287, 311, 328, 451 |
| AjnI | CCWGG | 2 cut(s) | 34, 444 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 603, 635 |
| AluBI | AGCT | 5 cut(s) | 103, 470, 476, 910, 920 |
| AluI | AGCT | 5 cut(s) | 103, 470, 476, 910, 920 |
| Alw21I | GWGCWC | 2 cut(s) | 754, 912 |
| Alw26I | GTCTC | 2 cut(s) | 607, 844 |
| Alw44I | GTGCAC | 1 cut(s) | 750 |
| AlwI | GGATC | 2 cut(s) | 25, 969 |
| Ama87I | CYCGRG | 1 cut(s) | 434 |
| Aor13HI | TCCGGA | 1 cut(s) | 997 |
| AoxI | GGCC | 8 cut(s) | 71, 91, 187, 213, 366, 408, 1177, 1403 |
| ApaLI | GTGCAC | 1 cut(s) | 750 |
| ApeKI | GCWGC | 4 cut(s) | 117, 292, 494, 1361 |
| ApoI | RAATTY | 2 cut(s) | 776, 1414 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 720 |
| Asp718I | GGTACC | 1 cut(s) | 1265 |
| AspA2I | CCTAGG | 1 cut(s) | 1289 |
| AspLEI | GCGC | 2 cut(s) | 1019, 1234 |
| AspS9I | GGNCC | 7 cut(s) | 188, 214, 237, 261, 298, 1079, 1330 |
| AsuHPI | GGTGA | 2 cut(s) | 1352, 1360 |
| AvaI | CYCGRG | 1 cut(s) | 434 |
| AvaII | GGWCC | 5 cut(s) | 237, 261, 298, 1079, 1330 |
| AvrII | CCTAGG | 1 cut(s) | 1289 |
| BaeGI | GKGCMC | 1 cut(s) | 754 |
| BalI | TGGCCA | 1 cut(s) | 1179 |
| BanI | GGYRCC | 3 cut(s) | 1190, 1265, 1346 |
| BanII | GRGCYC | 2 cut(s) | 912, 1035 |
| BbsI | GAAGAC | 2 cut(s) | 588, 824 |
| Bbv12I | GWGCWC | 2 cut(s) | 754, 912 |
| BbvI | GCAGC | 4 cut(s) | 129, 304, 506, 1348 |
| BccI | CCATC | 9 cut(s) | 407, 530, 657, 844, 1218, 1256, 1283, 1337, 1341 |
| BceAI | ACGGC | 1 cut(s) | 152 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 863, 897 |
| BciT130I | CCWGG | 2 cut(s) | 36, 446 |
| BciVI | GTATCC | 2 cut(s) | 418, 1054 |
| BcoDI | GTCTC | 2 cut(s) | 607, 844 |
| BfaI | CTAG | 4 cut(s) | 441, 653, 1290, 1352 |
| BfoI | RGCGCY | 1 cut(s) | 1235 |
| BfuI | GTATCC | 2 cut(s) | 418, 1054 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 503 |
| BisI | GCNGC | 4 cut(s) | 118, 293, 495, 1362 |
| BlnI | CCTAGG | 1 cut(s) | 1289 |
| BlsI | GCNGC | 4 cut(s) | 119, 294, 496, 1363 |
| Bme1390I | CCNGG | 2 cut(s) | 36, 446 |
| Bme18I | GGWCC | 5 cut(s) | 237, 261, 298, 1079, 1330 |
| BmeT110I | CYCGRG | 1 cut(s) | 434 |
| BmgBI | CACGTC | 5 cut(s) | 226, 287, 311, 328, 451 |
| BmgT120I | GGNCC | 7 cut(s) | 188, 214, 237, 261, 298, 1079, 1330 |
| BmrFI | CCNGG | 2 cut(s) | 36, 446 |
| BmrI | ACTGGG | 1 cut(s) | 343 |
| BmsI | GCATC | 3 cut(s) | 325, 409, 1348 |
| BmuI | ACTGGG | 1 cut(s) | 343 |
| BpiI | GAAGAC | 2 cut(s) | 588, 824 |
| BpmI | CTGGAG | 1 cut(s) | 542 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1400 |
| BpuEI | CTTGAG | 2 cut(s) | 389, 456 |
| Bsa29I | ATCGAT | 1 cut(s) | 873 |
| BsaI | GGTCTC | 1 cut(s) | 607 |
| BsaJI | CCNNGG | 4 cut(s) | 34, 978, 1289, 1320 |
| BsaWI | WCCGGW | 2 cut(s) | 96, 997 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 69, 96, 135, 375, 1291, 1295, 1326 |
| Bse118I | RCCGGY | 4 cut(s) | 48, 69, 89, 337 |
| Bse1I | ACTGG | 1 cut(s) | 349 |
| BseAI | TCCGGA | 1 cut(s) | 997 |
| BseBI | CCWGG | 2 cut(s) | 36, 446 |
| BseCI | ATCGAT | 1 cut(s) | 873 |
| BseDI | CCNNGG | 4 cut(s) | 34, 978, 1289, 1320 |
| BseGI | GGATG | 3 cut(s) | 525, 948, 1275 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 69, 96, 135, 375, 1291, 1295, 1326 |
| BseMII | CTCAG | 1 cut(s) | 1414 |
| BseNI | ACTGG | 1 cut(s) | 349 |
| BseSI | GKGCMC | 1 cut(s) | 754 |
| BseXI | GCAGC | 4 cut(s) | 129, 304, 506, 1348 |
| BseYI | CCCAGC | 1 cut(s) | 190 |
| Bsh1236I | CGCG | 2 cut(s) | 1017, 1223 |
| BshFI | GGCC | 8 cut(s) | 73, 93, 189, 215, 368, 410, 1179, 1405 |
| BshNI | GGYRCC | 3 cut(s) | 1190, 1265, 1346 |
| BshVI | ATCGAT | 1 cut(s) | 873 |
| BsiHKAI | GWGCWC | 2 cut(s) | 754, 912 |
| BsiHKCI | CYCGRG | 1 cut(s) | 434 |
| BsiSI | CCGG | 7 cut(s) | 49, 70, 90, 97, 338, 365, 998 |
| BsiWI | CGTACG | 1 cut(s) | 133 |
| BslFI | GGGAC | 3 cut(s) | 274, 1289, 1448 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 69, 96, 135, 375, 1291, 1295, 1326 |
| BsmAI | GTCTC | 2 cut(s) | 607, 844 |
| BsmBI | CGTCTC | 1 cut(s) | 844 |
| BsmFI | GGGAC | 3 cut(s) | 274, 1289, 1448 |
| BsnI | GGCC | 8 cut(s) | 73, 93, 189, 215, 368, 410, 1179, 1405 |
| Bso31I | GGTCTC | 1 cut(s) | 607 |
| BsoBI | CYCGRG | 1 cut(s) | 434 |
| Bsp1286I | GDGCHC | 3 cut(s) | 754, 912, 1035 |
| Bsp13I | TCCGGA | 1 cut(s) | 997 |
| Bsp143I | GATC | 3 cut(s) | 30, 792, 974 |
| Bsp19I | CCATGG | 1 cut(s) | 1320 |
| BspACI | CCGC | 4 cut(s) | 335, 394, 676, 1269 |
| BspANI | GGCC | 8 cut(s) | 73, 93, 189, 215, 368, 410, 1179, 1405 |
| BspCNI | CTCAG | 1 cut(s) | 1413 |
| BspDI | ATCGAT | 1 cut(s) | 873 |
| BspEI | TCCGGA | 1 cut(s) | 997 |
| BspFNI | CGCG | 2 cut(s) | 1017, 1223 |
| BspHI | TCATGA | 1 cut(s) | 904 |
| BspPI | GGATC | 2 cut(s) | 25, 969 |
| BspT107I | GGYRCC | 3 cut(s) | 1190, 1265, 1346 |
| BspTNI | GGTCTC | 1 cut(s) | 607 |
| BsrFI | RCCGGY | 4 cut(s) | 48, 69, 89, 337 |
| BsrI | ACTGG | 1 cut(s) | 349 |
| BssAI | RCCGGY | 4 cut(s) | 48, 69, 89, 337 |
| BssECI | CCNNGG | 4 cut(s) | 34, 978, 1289, 1320 |
| BssMI | GATC | 3 cut(s) | 30, 792, 974 |
| BssT1I | CCWWGG | 2 cut(s) | 1289, 1320 |
| Bst2UI | CCWGG | 2 cut(s) | 36, 446 |
| Bst4CI | ACNGT | 3 cut(s) | 133, 460, 1303 |
| Bst6I | CTCTTC | 1 cut(s) | 366 |
| BstC8I | GCNNGC | 4 cut(s) | 335, 398, 468, 1297 |
| BstDEI | CTNAG | 5 cut(s) | 499, 1055, 1203, 1400, 1467 |
| BstDSI | CCRYGG | 2 cut(s) | 978, 1320 |
| BstF5I | GGATG | 3 cut(s) | 525, 948, 1275 |
| BstFNI | CGCG | 2 cut(s) | 1017, 1223 |
| BstH2I | RGCGCY | 1 cut(s) | 1235 |
| BstHHI | GCGC | 2 cut(s) | 1019, 1234 |
| BstKTI | GATC | 3 cut(s) | 33, 795, 977 |
| BstMAI | GTCTC | 2 cut(s) | 607, 844 |
| BstMBI | GATC | 3 cut(s) | 30, 792, 974 |
| BstNI | CCWGG | 2 cut(s) | 36, 446 |
| BstSCI | CCNGG | 2 cut(s) | 34, 444 |
| BstSLI | GKGCMC | 1 cut(s) | 754 |
| BstUI | CGCG | 2 cut(s) | 1017, 1223 |
| BstV1I | GCAGC | 4 cut(s) | 129, 304, 506, 1348 |
| BstV2I | GAAGAC | 2 cut(s) | 588, 824 |
| BstX2I | RGATCY | 1 cut(s) | 974 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1187 |
| BstYI | RGATCY | 1 cut(s) | 974 |
| Bsu15I | ATCGAT | 1 cut(s) | 873 |
| BsuI | GTATCC | 2 cut(s) | 418, 1054 |
| BsuRI | GGCC | 8 cut(s) | 73, 93, 189, 215, 368, 410, 1179, 1405 |
| BsuTUI | ATCGAT | 1 cut(s) | 873 |
| BtgI | CCRYGG | 2 cut(s) | 978, 1320 |
| BtgZI | GCGATG | 1 cut(s) | 818 |
| BtrI | CACGTC | 5 cut(s) | 226, 287, 311, 328, 451 |
| BtsCI | GGATG | 3 cut(s) | 525, 948, 1275 |
| BtsI | GCAGTG | 2 cut(s) | 265, 302 |
| BtsIMutI | CAGTG | 3 cut(s) | 265, 302, 326 |
| Cac8I | GCNNGC | 4 cut(s) | 335, 398, 468, 1297 |
| CciI | TCATGA | 1 cut(s) | 904 |
| CfoI | GCGC | 2 cut(s) | 1019, 1234 |
| Cfr10I | RCCGGY | 4 cut(s) | 48, 69, 89, 337 |
| Cfr13I | GGNCC | 7 cut(s) | 188, 214, 237, 261, 298, 1079, 1330 |
| ClaI | ATCGAT | 1 cut(s) | 873 |
| CseI | GACGC | 3 cut(s) | 1080, 1229, 1405 |
| Csp6I | GTAC | 2 cut(s) | 134, 1266 |
| CviAII | CATG | 8 cut(s) | 563, 632, 905, 941, 1181, 1313, 1321, 1337 |
| CviQI | GTAC | 2 cut(s) | 134, 1266 |
| DdeI | CTNAG | 5 cut(s) | 499, 1055, 1203, 1400, 1467 |
| DpnI | GATC | 3 cut(s) | 32, 794, 976 |
| DpnII | GATC | 3 cut(s) | 30, 792, 974 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1077 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1077 |
| EaeI | YGGCCR | 4 cut(s) | 71, 91, 366, 1177 |
| Eam1104I | CTCTTC | 1 cut(s) | 366 |
| EarI | CTCTTC | 1 cut(s) | 366 |
| EciI | GGCGGA | 1 cut(s) | 383 |
| Ecl136II | GAGCTC | 1 cut(s) | 910 |
| Eco130I | CCWWGG | 2 cut(s) | 1289, 1320 |
| Eco147I | AGGCCT | 1 cut(s) | 1405 |
| Eco24I | GRGCYC | 2 cut(s) | 912, 1035 |
| Eco31I | GGTCTC | 1 cut(s) | 607 |
| Eco32I | GATATC | 1 cut(s) | 391 |
| Eco47I | GGWCC | 5 cut(s) | 237, 261, 298, 1079, 1330 |
| Eco53kI | GAGCTC | 1 cut(s) | 910 |
| Eco88I | CYCGRG | 1 cut(s) | 434 |
| EcoICRI | GAGCTC | 1 cut(s) | 910 |
| EcoO109I | RGGNCCY | 3 cut(s) | 237, 261, 298 |
| EcoRI | GAATTC | 1 cut(s) | 776 |
| EcoRII | CCWGG | 2 cut(s) | 34, 444 |
| EcoRV | GATATC | 1 cut(s) | 391 |
| EcoT14I | CCWWGG | 2 cut(s) | 1289, 1320 |
| EcoT38I | GRGCYC | 2 cut(s) | 912, 1035 |
| ErhI | CCWWGG | 2 cut(s) | 1289, 1320 |
| Esp3I | CGTCTC | 1 cut(s) | 844 |
| FaeI | CATG | 8 cut(s) | 566, 635, 908, 944, 1184, 1316, 1324, 1340 |
| FaqI | GGGAC | 3 cut(s) | 274, 1289, 1448 |
| FatI | CATG | 8 cut(s) | 562, 631, 904, 940, 1180, 1312, 1320, 1336 |
| FauI | CCCGC | 1 cut(s) | 342 |
| FauNDI | CATATG | 1 cut(s) | 543 |
| Fnu4HI | GCNGC | 4 cut(s) | 118, 293, 495, 1362 |
| FokI | GGATG | 3 cut(s) | 512, 935, 1262 |
| FriOI | GRGCYC | 2 cut(s) | 912, 1035 |
| Fsp4HI | GCNGC | 4 cut(s) | 118, 293, 495, 1362 |
| FspBI | CTAG | 4 cut(s) | 441, 653, 1290, 1352 |
| GlaI | GCGC | 2 cut(s) | 1018, 1233 |
| GluI | GCNGC | 4 cut(s) | 118, 293, 495, 1362 |
| GsaI | CCCAGC | 1 cut(s) | 194 |
| GsuI | CTGGAG | 1 cut(s) | 542 |
| HaeII | RGCGCY | 1 cut(s) | 1235 |
| HaeIII | GGCC | 8 cut(s) | 73, 93, 189, 215, 368, 410, 1179, 1405 |
| HapII | CCGG | 7 cut(s) | 49, 70, 90, 97, 338, 365, 998 |
| HgaI | GACGC | 3 cut(s) | 1080, 1229, 1405 |
| HhaI | GCGC | 2 cut(s) | 1019, 1234 |
| Hin1II | CATG | 8 cut(s) | 566, 635, 908, 944, 1184, 1316, 1324, 1340 |
| Hin6I | GCGC | 2 cut(s) | 1017, 1232 |
| HinP1I | GCGC | 2 cut(s) | 1017, 1232 |
| HincII | GTYRAC | 2 cut(s) | 354, 1145 |
| HindII | GTYRAC | 2 cut(s) | 354, 1145 |
| HindIII | AAGCTT | 1 cut(s) | 474 |
| HinfI | GANTC | 8 cut(s) | 39, 417, 430, 535, 635, 820, 870, 1001 |
| HpaII | CCGG | 7 cut(s) | 49, 70, 90, 97, 338, 365, 998 |
| HphI | GGTGA | 2 cut(s) | 1352, 1360 |
| Hpy166II | GTNNAC | 4 cut(s) | 343, 354, 752, 1145 |
| Hpy188I | TCNGA | 3 cut(s) | 715, 1102, 1395 |
| Hpy8I | GTNNAC | 4 cut(s) | 343, 354, 752, 1145 |
| HpyAV | CCTTC | 3 cut(s) | 179, 585, 1097 |
| HpyCH4III | ACNGT | 3 cut(s) | 133, 460, 1303 |
| HpyCH4IV | ACGT | 6 cut(s) | 225, 286, 310, 327, 450, 1147 |
| HpyCH4V | TGCA | 4 cut(s) | 752, 845, 884, 1364 |
| HpyF3I | CTNAG | 5 cut(s) | 499, 1055, 1203, 1400, 1467 |
| HpySE526I | ACGT | 6 cut(s) | 225, 286, 310, 327, 450, 1147 |
| Hsp92II | CATG | 8 cut(s) | 566, 635, 908, 944, 1184, 1316, 1324, 1340 |
| HspAI | GCGC | 2 cut(s) | 1017, 1232 |
| KflI | GGGWCCC | 1 cut(s) | 261 |
| Kpn2I | TCCGGA | 1 cut(s) | 997 |
| KpnI | GGTACC | 1 cut(s) | 1269 |
| Kzo9I | GATC | 3 cut(s) | 30, 792, 974 |
| LmnI | GCTCC | 4 cut(s) | 108, 561, 917, 1038 |
| Lsp1109I | GCAGC | 4 cut(s) | 129, 304, 506, 1348 |
| LweI | GCATC | 3 cut(s) | 325, 409, 1348 |
| MaeI | CTAG | 4 cut(s) | 441, 653, 1290, 1352 |
| MaeII | ACGT | 6 cut(s) | 225, 286, 310, 327, 450, 1147 |
| MaeIII | GTNAC | 1 cut(s) | 877 |
| MalI | GATC | 3 cut(s) | 32, 794, 976 |
| MboI | GATC | 3 cut(s) | 30, 792, 974 |
| MboII | GAAGA | 9 cut(s) | 34, 175, 178, 211, 353, 590, 593, 829, 970 |
| MflI | RGATCY | 1 cut(s) | 974 |
| MhlI | GDGCHC | 3 cut(s) | 754, 912, 1035 |
| MlsI | TGGCCA | 1 cut(s) | 1179 |
| MluCI | AATT | 7 cut(s) | 550, 743, 776, 862, 967, 1006, 1414 |
| MluI | ACGCGT | 1 cut(s) | 1221 |
| MluNI | TGGCCA | 1 cut(s) | 1179 |
| MlyI | GAGTC | 3 cut(s) | 48, 529, 814 |
| Mox20I | TGGCCA | 1 cut(s) | 1179 |
| MroI | TCCGGA | 1 cut(s) | 997 |
| MroXI | GAANNNNTTC | 1 cut(s) | 720 |
| MscI | TGGCCA | 1 cut(s) | 1179 |
| MseI | TTAA | 4 cut(s) | 729, 737, 762, 770 |
| MslI | CAYNNNNRTG | 6 cut(s) | 530, 953, 1185, 1215, 1338, 1341 |
| Msp20I | TGGCCA | 1 cut(s) | 1179 |
| MspI | CCGG | 7 cut(s) | 49, 70, 90, 97, 338, 365, 998 |
| MspR9I | CCNGG | 2 cut(s) | 36, 446 |
| MvaI | CCWGG | 2 cut(s) | 36, 446 |
| MvnI | CGCG | 2 cut(s) | 1017, 1223 |
| NcoI | CCATGG | 1 cut(s) | 1320 |
| NdeI | CATATG | 1 cut(s) | 543 |
| NdeII | GATC | 3 cut(s) | 30, 792, 974 |
| NlaIII | CATG | 8 cut(s) | 566, 635, 908, 944, 1184, 1316, 1324, 1340 |
| PaeR7I | CTCGAG | 1 cut(s) | 434 |
| PagI | TCATGA | 1 cut(s) | 904 |
| PceI | AGGCCT | 1 cut(s) | 1405 |
| PdmI | GAANNNNTTC | 1 cut(s) | 720 |
| PfeI | GAWTC | 5 cut(s) | 417, 430, 635, 870, 1001 |
| Pfl23II | CGTACG | 1 cut(s) | 133 |
| PkrI | GCNGC | 4 cut(s) | 119, 294, 496, 1363 |
| PleI | GAGTC | 3 cut(s) | 47, 529, 814 |
| PpsI | GAGTC | 3 cut(s) | 47, 529, 814 |
| PpuMI | RGGWCCY | 3 cut(s) | 237, 261, 298 |
| Psp124BI | GAGCTC | 1 cut(s) | 912 |
| Psp5II | RGGWCCY | 3 cut(s) | 237, 261, 298 |
| Psp6I | CCWGG | 2 cut(s) | 34, 444 |
| PspFI | CCCAGC | 1 cut(s) | 190 |
| PspGI | CCWGG | 2 cut(s) | 34, 444 |
| PspLI | CGTACG | 1 cut(s) | 133 |
| PspPI | GGNCC | 7 cut(s) | 188, 214, 237, 261, 298, 1079, 1330 |
| PspPPI | RGGWCCY | 3 cut(s) | 237, 261, 298 |
| PsuI | RGATCY | 1 cut(s) | 974 |
| RsaI | GTAC | 2 cut(s) | 135, 1267 |
| RsaNI | GTAC | 2 cut(s) | 134, 1266 |
| RseI | CAYNNNNRTG | 6 cut(s) | 530, 953, 1185, 1215, 1338, 1341 |
| SacI | GAGCTC | 1 cut(s) | 912 |
| SaqAI | TTAA | 4 cut(s) | 729, 737, 762, 770 |
| SatI | GCNGC | 4 cut(s) | 118, 293, 495, 1362 |
| Sau3AI | GATC | 3 cut(s) | 30, 792, 974 |
| Sau96I | GGNCC | 7 cut(s) | 188, 214, 237, 261, 298, 1079, 1330 |
| SchI | GAGTC | 3 cut(s) | 48, 529, 814 |
| ScrFI | CCNGG | 2 cut(s) | 36, 446 |
| SduI | GDGCHC | 3 cut(s) | 754, 912, 1035 |
| SfaNI | GCATC | 3 cut(s) | 325, 409, 1348 |
| Sfr274I | CTCGAG | 1 cut(s) | 434 |
| SinI | GGWCC | 5 cut(s) | 237, 261, 298, 1079, 1330 |
| SlaI | CTCGAG | 1 cut(s) | 434 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 530, 953, 1185, 1215, 1338, 1341 |
| SmlI | CTYRAG | 3 cut(s) | 404, 434, 471 |
| SmoI | CTYRAG | 3 cut(s) | 404, 434, 471 |
| Sse9I | AATT | 7 cut(s) | 550, 743, 776, 862, 967, 1006, 1414 |
| SseBI | AGGCCT | 1 cut(s) | 1405 |
| SsiI | CCGC | 4 cut(s) | 335, 394, 676, 1269 |
| SspI | AATATT | 1 cut(s) | 125 |
| SspMI | CTAG | 4 cut(s) | 441, 653, 1290, 1352 |
| SstI | GAGCTC | 1 cut(s) | 912 |
| StuI | AGGCCT | 1 cut(s) | 1405 |
| StyD4I | CCNGG | 2 cut(s) | 34, 444 |
| StyI | CCWWGG | 2 cut(s) | 1289, 1320 |
| TaaI | ACNGT | 3 cut(s) | 133, 460, 1303 |
| TaiI | ACGT | 6 cut(s) | 228, 289, 313, 330, 453, 1150 |
| TaqI | TCGA | 6 cut(s) | 29, 435, 609, 868, 873, 971 |
| TasI | AATT | 7 cut(s) | 550, 743, 776, 862, 967, 1006, 1414 |
| TfiI | GAWTC | 5 cut(s) | 417, 430, 635, 870, 1001 |
| Tru1I | TTAA | 4 cut(s) | 729, 737, 762, 770 |
| Tru9I | TTAA | 4 cut(s) | 729, 737, 762, 770 |
| TscAI | CASTG | 3 cut(s) | 272, 309, 326 |
| TseI | GCWGC | 4 cut(s) | 117, 292, 494, 1361 |
| TspDTI | ATGAA | 5 cut(s) | 265, 587, 591, 893, 938 |
| TspGWI | ACGGA | 3 cut(s) | 826, 967, 1144 |
| TspRI | CASTG | 3 cut(s) | 272, 309, 326 |
| VneI | GTGCAC | 1 cut(s) | 750 |
| VpaK11BI | GGWCC | 5 cut(s) | 237, 261, 298, 1079, 1330 |
| XapI | RAATTY | 2 cut(s) | 776, 1414 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1292, 1340 |
| XhoI | CTCGAG | 1 cut(s) | 434 |
| XmaJI | CCTAGG | 1 cut(s) | 1289 |
| XmnI | GAANNNNTTC | 1 cut(s) | 720 |
| XspI | CTAG | 4 cut(s) | 441, 653, 1290, 1352 |