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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 585, 630 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 693 |
| AccB1I | GGYRCC | 1 cut(s) | 806 |
| AciI | CCGC | 4 cut(s) | 487, 727, 740, 969 |
| AclWI | GGATC | 2 cut(s) | 128, 518 |
| AcuI | CTGAAG | 1 cut(s) | 513 |
| AcvI | CACGTG | 2 cut(s) | 749, 767 |
| AcyI | GRCGYC | 1 cut(s) | 190 |
| AdeI | CACNNNGTG | 1 cut(s) | 752 |
| AfeI | AGCGCT | 1 cut(s) | 258 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 64, 644, 645, 768, 797, 820 |
| AflIII | ACRYGT | 2 cut(s) | 746, 764 |
| AgsI | TTSAA | 6 cut(s) | 96, 307, 314, 343, 591, 940 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 410 |
| AjnI | CCWGG | 1 cut(s) | 790 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 255, 287 |
| AluBI | AGCT | 6 cut(s) | 247, 371, 427, 529, 705, 944 |
| AluI | AGCT | 6 cut(s) | 247, 371, 427, 529, 705, 944 |
| Alw21I | GWGCWC | 2 cut(s) | 841, 960 |
| Alw44I | GTGCAC | 2 cut(s) | 837, 956 |
| AlwI | GGATC | 2 cut(s) | 128, 518 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 137 |
| Aor51HI | AGCGCT | 1 cut(s) | 258 |
| AoxI | GGCC | 1 cut(s) | 593 |
| ApaLI | GTGCAC | 2 cut(s) | 837, 956 |
| ApeKI | GCWGC | 1 cut(s) | 705 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 372 |
| AspA2I | CCTAGG | 1 cut(s) | 818 |
| AspLEI | GCGC | 2 cut(s) | 259, 330 |
| AspS9I | GGNCC | 2 cut(s) | 594, 695 |
| AsuHPI | GGTGA | 3 cut(s) | 77, 368, 916 |
| AvaII | GGWCC | 1 cut(s) | 695 |
| AvrII | CCTAGG | 1 cut(s) | 818 |
| BaeGI | GKGCMC | 2 cut(s) | 841, 960 |
| BanI | GGYRCC | 1 cut(s) | 806 |
| BauI | CACGAG | 2 cut(s) | 514, 572 |
| BbrPI | CACGTG | 2 cut(s) | 749, 767 |
| Bbv12I | GWGCWC | 2 cut(s) | 841, 960 |
| BbvI | GCAGC | 1 cut(s) | 692 |
| BccI | CCATC | 1 cut(s) | 927 |
| BciT130I | CCWGG | 1 cut(s) | 792 |
| BciVI | GTATCC | 1 cut(s) | 736 |
| BfaI | CTAG | 4 cut(s) | 15, 260, 504, 819 |
| BfmI | CTRYAG | 2 cut(s) | 380, 546 |
| BfoI | RGCGCY | 1 cut(s) | 260 |
| BfuI | GTATCC | 1 cut(s) | 736 |
| BisI | GCNGC | 2 cut(s) | 706, 969 |
| BlnI | CCTAGG | 1 cut(s) | 818 |
| BlsI | GCNGC | 2 cut(s) | 707, 970 |
| Bme1390I | CCNGG | 1 cut(s) | 792 |
| Bme18I | GGWCC | 1 cut(s) | 695 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 410 |
| BmgT120I | GGNCC | 2 cut(s) | 594, 695 |
| BmiI | GGNNCC | 3 cut(s) | 662, 696, 808 |
| BmrFI | CCNGG | 1 cut(s) | 792 |
| BmsI | GCATC | 4 cut(s) | 174, 226, 727, 955 |
| BpuEI | CTTGAG | 1 cut(s) | 153 |
| Bsa29I | ATCGAT | 1 cut(s) | 880 |
| BsaAI | YACGTR | 2 cut(s) | 749, 767 |
| BsaBI | GATNNNNATC | 1 cut(s) | 918 |
| BsaHI | GRCGYC | 1 cut(s) | 190 |
| BsaJI | CCNNGG | 2 cut(s) | 790, 818 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 209, 239, 763, 793, 799, 829 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 64, 644, 645, 768, 797, 820 |
| Bse3DI | GCAATG | 1 cut(s) | 283 |
| Bse8I | GATNNNNATC | 1 cut(s) | 918 |
| BseBI | CCWGG | 1 cut(s) | 792 |
| BseCI | ATCGAT | 1 cut(s) | 880 |
| BseDI | CCNNGG | 2 cut(s) | 790, 818 |
| BseGI | GGATG | 2 cut(s) | 241, 970 |
| BseJI | GATNNNNATC | 1 cut(s) | 918 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 64, 644, 645, 768, 797, 820 |
| BseMI | GCAATG | 1 cut(s) | 283 |
| BseMII | CTCAG | 1 cut(s) | 223 |
| BseRI | GAGGAG | 1 cut(s) | 284 |
| BseSI | GKGCMC | 2 cut(s) | 841, 960 |
| BseXI | GCAGC | 1 cut(s) | 692 |
| BshFI | GGCC | 1 cut(s) | 595 |
| BshNI | GGYRCC | 1 cut(s) | 806 |
| BshVI | ATCGAT | 1 cut(s) | 880 |
| BsiHKAI | GWGCWC | 2 cut(s) | 841, 960 |
| BslFI | GGGAC | 1 cut(s) | 699 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 64, 644, 645, 768, 797, 820 |
| BsmFI | GGGAC | 1 cut(s) | 699 |
| BsmI | GAATGC | 1 cut(s) | 612 |
| BsnI | GGCC | 1 cut(s) | 595 |
| Bsp1286I | GDGCHC | 2 cut(s) | 841, 960 |
| Bsp143I | GATC | 3 cut(s) | 133, 228, 510 |
| BspACI | CCGC | 4 cut(s) | 487, 727, 740, 969 |
| BspANI | GGCC | 1 cut(s) | 595 |
| BspCNI | CTCAG | 1 cut(s) | 222 |
| BspDI | ATCGAT | 1 cut(s) | 880 |
| BspLI | GGNNCC | 3 cut(s) | 662, 696, 808 |
| BspPI | GGATC | 2 cut(s) | 128, 518 |
| BspQI | GCTCTTC | 2 cut(s) | 258, 378 |
| BspT107I | GGYRCC | 1 cut(s) | 806 |
| BsrDI | GCAATG | 1 cut(s) | 283 |
| BssECI | CCNNGG | 2 cut(s) | 790, 818 |
| BssMI | GATC | 3 cut(s) | 133, 228, 510 |
| BssNI | GRCGYC | 1 cut(s) | 190 |
| BssSI | CACGAG | 2 cut(s) | 514, 572 |
| BssT1I | CCWWGG | 1 cut(s) | 818 |
| Bst2BI | CACGAG | 2 cut(s) | 514, 572 |
| Bst2UI | CCWGG | 1 cut(s) | 792 |
| Bst4CI | ACNGT | 1 cut(s) | 384 |
| Bst6I | CTCTTC | 2 cut(s) | 258, 378 |
| BstACI | GRCGYC | 1 cut(s) | 190 |
| BstBAI | YACGTR | 2 cut(s) | 749, 767 |
| BstC8I | GCNNGC | 1 cut(s) | 165 |
| BstDEI | CTNAG | 2 cut(s) | 209, 666 |
| BstEII | GGTNACC | 1 cut(s) | 67 |
| BstF5I | GGATG | 2 cut(s) | 241, 970 |
| BstH2I | RGCGCY | 1 cut(s) | 260 |
| BstHHI | GCGC | 2 cut(s) | 259, 330 |
| BstKTI | GATC | 3 cut(s) | 136, 231, 513 |
| BstMBI | GATC | 3 cut(s) | 133, 228, 510 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 265, 792 |
| BstNI | CCWGG | 1 cut(s) | 792 |
| BstNSI | RCATGY | 1 cut(s) | 167 |
| BstPI | GGTNACC | 1 cut(s) | 67 |
| BstSCI | CCNGG | 1 cut(s) | 790 |
| BstSFI | CTRYAG | 2 cut(s) | 380, 546 |
| BstSLI | GKGCMC | 2 cut(s) | 841, 960 |
| BstV1I | GCAGC | 1 cut(s) | 692 |
| BstX2I | RGATCY | 1 cut(s) | 133 |
| BstYI | RGATCY | 1 cut(s) | 133 |
| Bsu15I | ATCGAT | 1 cut(s) | 880 |
| BsuI | GTATCC | 1 cut(s) | 736 |
| BsuRI | GGCC | 1 cut(s) | 595 |
| BsuTUI | ATCGAT | 1 cut(s) | 880 |
| BtsCI | GGATG | 2 cut(s) | 241, 970 |
| BtsI | GCAGTG | 1 cut(s) | 802 |
| BtsIMutI | CAGTG | 2 cut(s) | 489, 802 |
| Cac8I | GCNNGC | 1 cut(s) | 165 |
| CaiI | CAGNNNCTG | 1 cut(s) | 137 |
| CfoI | GCGC | 2 cut(s) | 259, 330 |
| Cfr13I | GGNCC | 2 cut(s) | 594, 695 |
| ClaI | ATCGAT | 1 cut(s) | 880 |
| CseI | GACGC | 1 cut(s) | 198 |
| CviAII | CATG | 3 cut(s) | 31, 164, 560 |
| CviJI | RGCY | 9 cut(s) | 48, 247, 371, 427, 464, 529, 595, 705, 944 |
| CviKI_1 | RGCY | 9 cut(s) | 48, 247, 371, 427, 464, 529, 595, 705, 944 |
| DdeI | CTNAG | 2 cut(s) | 209, 666 |
| DpnI | GATC | 3 cut(s) | 135, 230, 512 |
| DpnII | GATC | 3 cut(s) | 133, 228, 510 |
| DraIII | CACNNNGTG | 1 cut(s) | 752 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 693 |
| DriI | GACNNNNNGTC | 1 cut(s) | 410 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 693 |
| Eam1104I | CTCTTC | 2 cut(s) | 258, 378 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 410 |
| EarI | CTCTTC | 2 cut(s) | 258, 378 |
| Eco130I | CCWWGG | 1 cut(s) | 818 |
| Eco47I | GGWCC | 1 cut(s) | 695 |
| Eco47III | AGCGCT | 1 cut(s) | 258 |
| Eco57I | CTGAAG | 1 cut(s) | 513 |
| Eco72I | CACGTG | 2 cut(s) | 749, 767 |
| Eco91I | GGTNACC | 1 cut(s) | 67 |
| EcoO65I | GGTNACC | 1 cut(s) | 67 |
| EcoRII | CCWGG | 1 cut(s) | 790 |
| EcoT14I | CCWWGG | 1 cut(s) | 818 |
| ErhI | CCWWGG | 1 cut(s) | 818 |
| FaeI | CATG | 3 cut(s) | 34, 167, 563 |
| FaqI | GGGAC | 1 cut(s) | 699 |
| FatI | CATG | 3 cut(s) | 30, 163, 559 |
| FauNDI | CATATG | 1 cut(s) | 195 |
| Fnu4HI | GCNGC | 2 cut(s) | 706, 969 |
| FokI | GGATG | 2 cut(s) | 248, 977 |
| Fsp4HI | GCNGC | 2 cut(s) | 706, 969 |
| FspBI | CTAG | 4 cut(s) | 15, 260, 504, 819 |
| GlaI | GCGC | 2 cut(s) | 258, 329 |
| GluI | GCNGC | 2 cut(s) | 706, 969 |
| HaeII | RGCGCY | 1 cut(s) | 260 |
| HaeIII | GGCC | 1 cut(s) | 595 |
| HgaI | GACGC | 1 cut(s) | 198 |
| HhaI | GCGC | 2 cut(s) | 259, 330 |
| Hin1I | GRCGYC | 1 cut(s) | 190 |
| Hin1II | CATG | 3 cut(s) | 34, 167, 563 |
| Hin6I | GCGC | 2 cut(s) | 257, 328 |
| HinP1I | GCGC | 2 cut(s) | 257, 328 |
| HinfI | GANTC | 4 cut(s) | 18, 38, 82, 287 |
| HphI | GGTGA | 3 cut(s) | 77, 368, 916 |
| Hpy166II | GTNNAC | 3 cut(s) | 404, 839, 958 |
| Hpy188I | TCNGA | 4 cut(s) | 52, 212, 367, 435 |
| Hpy188III | TCNNGA | 2 cut(s) | 514, 574 |
| Hpy8I | GTNNAC | 3 cut(s) | 404, 839, 958 |
| Hpy99I | CGWCG | 1 cut(s) | 192 |
| HpyAV | CCTTC | 3 cut(s) | 301, 460, 713 |
| HpyCH4III | ACNGT | 1 cut(s) | 384 |
| HpyCH4IV | ACGT | 3 cut(s) | 748, 766, 835 |
| HpyCH4V | TGCA | 5 cut(s) | 239, 635, 651, 839, 958 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 265, 792 |
| HpyF3I | CTNAG | 2 cut(s) | 209, 666 |
| HpySE526I | ACGT | 3 cut(s) | 748, 766, 835 |
| Hsp92I | GRCGYC | 1 cut(s) | 190 |
| Hsp92II | CATG | 3 cut(s) | 34, 167, 563 |
| HspAI | GCGC | 2 cut(s) | 257, 328 |
| Kzo9I | GATC | 3 cut(s) | 133, 228, 510 |
| LguI | GCTCTTC | 2 cut(s) | 258, 378 |
| LpnPI | CCDG | 7 cut(s) | 30, 144, 150, 312, 423, 777, 804 |
| Lsp1109I | GCAGC | 1 cut(s) | 692 |
| LweI | GCATC | 4 cut(s) | 174, 226, 727, 955 |
| MaeI | CTAG | 4 cut(s) | 15, 260, 504, 819 |
| MaeII | ACGT | 3 cut(s) | 748, 766, 835 |
| MaeIII | GTNAC | 1 cut(s) | 67 |
| MalI | GATC | 3 cut(s) | 135, 230, 512 |
| MboI | GATC | 3 cut(s) | 133, 228, 510 |
| MboII | GAAGA | 3 cut(s) | 275, 365, 911 |
| MflI | RGATCY | 1 cut(s) | 133 |
| MhlI | GDGCHC | 2 cut(s) | 841, 960 |
| MluCI | AATT | 6 cut(s) | 361, 429, 580, 586, 625, 845 |
| MlyI | GAGTC | 2 cut(s) | 12, 32 |
| MroXI | GAANNNNTTC | 1 cut(s) | 372 |
| MseI | TTAA | 1 cut(s) | 848 |
| MslI | CAYNNNNRTG | 4 cut(s) | 572, 867, 882, 963 |
| MspR9I | CCNGG | 1 cut(s) | 792 |
| Mva1269I | GAATGC | 1 cut(s) | 612 |
| MvaI | CCWGG | 1 cut(s) | 792 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 265, 792 |
| NdeI | CATATG | 1 cut(s) | 195 |
| NdeII | GATC | 3 cut(s) | 133, 228, 510 |
| NlaIII | CATG | 3 cut(s) | 34, 167, 563 |
| NlaIV | GGNNCC | 3 cut(s) | 662, 696, 808 |
| NspI | RCATGY | 1 cut(s) | 167 |
| PaeI | GCATGC | 1 cut(s) | 167 |
| PciSI | GCTCTTC | 2 cut(s) | 258, 378 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 832 |
| PctI | GAATGC | 1 cut(s) | 612 |
| PdmI | GAANNNNTTC | 1 cut(s) | 372 |
| PfeI | GAWTC | 2 cut(s) | 82, 287 |
| PkrI | GCNGC | 2 cut(s) | 707, 970 |
| PleI | GAGTC | 2 cut(s) | 12, 32 |
| PmaCI | CACGTG | 2 cut(s) | 749, 767 |
| PmlI | CACGTG | 2 cut(s) | 749, 767 |
| PpsI | GAGTC | 2 cut(s) | 12, 32 |
| Ppu21I | YACGTR | 2 cut(s) | 749, 767 |
| PsiI | TTATAA | 2 cut(s) | 585, 630 |
| Psp6I | CCWGG | 1 cut(s) | 790 |
| PspCI | CACGTG | 2 cut(s) | 749, 767 |
| PspEI | GGTNACC | 1 cut(s) | 67 |
| PspGI | CCWGG | 1 cut(s) | 790 |
| PspN4I | GGNNCC | 3 cut(s) | 662, 696, 808 |
| PspPI | GGNCC | 2 cut(s) | 594, 695 |
| PstNI | CAGNNNCTG | 1 cut(s) | 137 |
| PsuI | RGATCY | 1 cut(s) | 133 |
| RseI | CAYNNNNRTG | 4 cut(s) | 572, 867, 882, 963 |
| SapI | GCTCTTC | 2 cut(s) | 258, 378 |
| SaqAI | TTAA | 1 cut(s) | 848 |
| SatI | GCNGC | 2 cut(s) | 706, 969 |
| Sau3AI | GATC | 3 cut(s) | 133, 228, 510 |
| Sau96I | GGNCC | 2 cut(s) | 594, 695 |
| SchI | GAGTC | 2 cut(s) | 12, 32 |
| ScrFI | CCNGG | 1 cut(s) | 792 |
| SduI | GDGCHC | 2 cut(s) | 841, 960 |
| SfaNI | GCATC | 4 cut(s) | 174, 226, 727, 955 |
| SfcI | CTRYAG | 2 cut(s) | 380, 546 |
| SinI | GGWCC | 1 cut(s) | 695 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 572, 867, 882, 963 |
| SmlI | CTYRAG | 1 cut(s) | 168 |
| SmoI | CTYRAG | 1 cut(s) | 168 |
| SphI | GCATGC | 1 cut(s) | 167 |
| Sse9I | AATT | 6 cut(s) | 361, 429, 580, 586, 625, 845 |
| SsiI | CCGC | 4 cut(s) | 487, 727, 740, 969 |
| SspI | AATATT | 1 cut(s) | 105 |
| SspMI | CTAG | 4 cut(s) | 15, 260, 504, 819 |
| StyD4I | CCNGG | 1 cut(s) | 790 |
| StyI | CCWWGG | 1 cut(s) | 818 |
| TaaI | ACNGT | 1 cut(s) | 384 |
| TaiI | ACGT | 3 cut(s) | 751, 769, 838 |
| TaqI | TCGA | 4 cut(s) | 5, 21, 227, 880 |
| TasI | AATT | 6 cut(s) | 361, 429, 580, 586, 625, 845 |
| TauI | GCSGC | 1 cut(s) | 971 |
| TfiI | GAWTC | 2 cut(s) | 82, 287 |
| Tru1I | TTAA | 1 cut(s) | 848 |
| Tru9I | TTAA | 1 cut(s) | 848 |
| TscAI | CASTG | 2 cut(s) | 496, 802 |
| TseI | GCWGC | 1 cut(s) | 705 |
| TspDTI | ATGAA | 4 cut(s) | 512, 593, 605, 966 |
| TspGWI | ACGGA | 1 cut(s) | 523 |
| TspRI | CASTG | 2 cut(s) | 496, 802 |
| VneI | GTGCAC | 2 cut(s) | 837, 956 |
| VpaK11BI | GGWCC | 1 cut(s) | 695 |
| XceI | RCATGY | 1 cut(s) | 167 |
| XmaJI | CCTAGG | 1 cut(s) | 818 |
| XmnI | GAANNNNTTC | 1 cut(s) | 372 |
| XspI | CTAG | 4 cut(s) | 15, 260, 504, 819 |