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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 305 |
| AccB1I | GGYRCC | 2 cut(s) | 260, 418 |
| AccII | CGCG | 1 cut(s) | 246 |
| AccIII | TCCGGA | 1 cut(s) | 226 |
| AcoI | YGGCCR | 1 cut(s) | 405 |
| AcsI | RAATTY | 1 cut(s) | 5 |
| AcyI | GRCGYC | 2 cut(s) | 261, 419 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 257 |
| AluBI | AGCT | 2 cut(s) | 139, 149 |
| AluI | AGCT | 2 cut(s) | 139, 149 |
| Alw26I | GTCTC | 1 cut(s) | 196 |
| Aor13HI | TCCGGA | 1 cut(s) | 226 |
| AoxI | GGCC | 1 cut(s) | 405 |
| ApoI | RAATTY | 1 cut(s) | 5 |
| AspLEI | GCGC | 3 cut(s) | 248, 263, 421 |
| AspS9I | GGNCC | 1 cut(s) | 307 |
| AvaII | GGWCC | 1 cut(s) | 307 |
| BalI | TGGCCA | 1 cut(s) | 407 |
| BanI | GGYRCC | 2 cut(s) | 260, 418 |
| BccI | CCATC | 1 cut(s) | 73 |
| BcoDI | GTCTC | 1 cut(s) | 196 |
| BfaI | CTAG | 2 cut(s) | 284, 296 |
| BfmI | CTRYAG | 1 cut(s) | 111 |
| BfoI | RGCGCY | 2 cut(s) | 264, 422 |
| Bme18I | GGWCC | 1 cut(s) | 307 |
| BmgT120I | GGNCC | 1 cut(s) | 307 |
| BmiI | GGNNCC | 3 cut(s) | 262, 361, 420 |
| BsaHI | GRCGYC | 2 cut(s) | 261, 419 |
| BsaI | GGTCTC | 1 cut(s) | 196 |
| BsaJI | CCNNGG | 1 cut(s) | 207 |
| BsaWI | WCCGGW | 1 cut(s) | 226 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 257 |
| BseAI | TCCGGA | 1 cut(s) | 226 |
| BseDI | CCNNGG | 1 cut(s) | 207 |
| BseGI | GGATG | 1 cut(s) | 177 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 257 |
| Bsh1236I | CGCG | 1 cut(s) | 246 |
| BshFI | GGCC | 1 cut(s) | 407 |
| BshNI | GGYRCC | 2 cut(s) | 260, 418 |
| BsiSI | CCGG | 1 cut(s) | 227 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 257 |
| BsmAI | GTCTC | 1 cut(s) | 196 |
| BsnI | GGCC | 1 cut(s) | 407 |
| Bso31I | GGTCTC | 1 cut(s) | 196 |
| Bsp13I | TCCGGA | 1 cut(s) | 226 |
| BspANI | GGCC | 1 cut(s) | 407 |
| BspEI | TCCGGA | 1 cut(s) | 226 |
| BspFNI | CGCG | 1 cut(s) | 246 |
| BspHI | TCATGA | 1 cut(s) | 133 |
| BspLI | GGNNCC | 3 cut(s) | 262, 361, 420 |
| BspMAI | CTGCAG | 1 cut(s) | 115 |
| BspT107I | GGYRCC | 2 cut(s) | 260, 418 |
| BspTNI | GGTCTC | 1 cut(s) | 196 |
| BssECI | CCNNGG | 1 cut(s) | 207 |
| BssNI | GRCGYC | 2 cut(s) | 261, 419 |
| BssT1I | CCWWGG | 1 cut(s) | 207 |
| Bst6I | CTCTTC | 1 cut(s) | 360 |
| BstACI | GRCGYC | 2 cut(s) | 261, 419 |
| BstDEI | CTNAG | 1 cut(s) | 431 |
| BstEII | GGTNACC | 1 cut(s) | 334 |
| BstF5I | GGATG | 1 cut(s) | 177 |
| BstFNI | CGCG | 1 cut(s) | 246 |
| BstH2I | RGCGCY | 2 cut(s) | 264, 422 |
| BstHHI | GCGC | 3 cut(s) | 248, 263, 421 |
| BstMAI | GTCTC | 1 cut(s) | 196 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 267 |
| BstPI | GGTNACC | 1 cut(s) | 334 |
| BstSFI | CTRYAG | 1 cut(s) | 111 |
| BstUI | CGCG | 1 cut(s) | 246 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 415 |
| BsuRI | GGCC | 1 cut(s) | 407 |
| BtgZI | GCGATG | 1 cut(s) | 47 |
| BtsCI | GGATG | 1 cut(s) | 177 |
| CciI | TCATGA | 1 cut(s) | 133 |
| CfoI | GCGC | 3 cut(s) | 248, 263, 421 |
| Cfr13I | GGNCC | 1 cut(s) | 307 |
| CviAII | CATG | 3 cut(s) | 134, 376, 409 |
| CviJI | RGCY | 4 cut(s) | 139, 149, 407, 437 |
| CviKI_1 | RGCY | 4 cut(s) | 139, 149, 407, 437 |
| DdeI | CTNAG | 1 cut(s) | 431 |
| DinI | GGCGCC | 2 cut(s) | 262, 420 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 305 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 305 |
| EaeI | YGGCCR | 1 cut(s) | 405 |
| Eam1104I | CTCTTC | 1 cut(s) | 360 |
| EarI | CTCTTC | 1 cut(s) | 360 |
| Eco130I | CCWWGG | 1 cut(s) | 207 |
| Eco31I | GGTCTC | 1 cut(s) | 196 |
| Eco32I | GATATC | 1 cut(s) | 22 |
| Eco47I | GGWCC | 1 cut(s) | 307 |
| Eco91I | GGTNACC | 1 cut(s) | 334 |
| EcoO65I | GGTNACC | 1 cut(s) | 334 |
| EcoRI | GAATTC | 1 cut(s) | 5 |
| EcoRV | GATATC | 1 cut(s) | 22 |
| EcoT14I | CCWWGG | 1 cut(s) | 207 |
| EgeI | GGCGCC | 2 cut(s) | 262, 420 |
| EheI | GGCGCC | 2 cut(s) | 262, 420 |
| ErhI | CCWWGG | 1 cut(s) | 207 |
| FaeI | CATG | 3 cut(s) | 137, 379, 412 |
| FatI | CATG | 3 cut(s) | 133, 375, 408 |
| FauNDI | CATATG | 1 cut(s) | 28 |
| FokI | GGATG | 1 cut(s) | 164 |
| FspBI | CTAG | 2 cut(s) | 284, 296 |
| GlaI | GCGC | 3 cut(s) | 247, 262, 420 |
| HaeII | RGCGCY | 2 cut(s) | 264, 422 |
| HaeIII | GGCC | 1 cut(s) | 407 |
| HapII | CCGG | 1 cut(s) | 227 |
| HhaI | GCGC | 3 cut(s) | 248, 263, 421 |
| Hin1I | GRCGYC | 2 cut(s) | 261, 419 |
| Hin1II | CATG | 3 cut(s) | 137, 379, 412 |
| Hin6I | GCGC | 3 cut(s) | 246, 261, 419 |
| HinP1I | GCGC | 3 cut(s) | 246, 261, 419 |
| HincII | GTYRAC | 1 cut(s) | 373 |
| HindII | GTYRAC | 1 cut(s) | 373 |
| HinfI | GANTC | 3 cut(s) | 49, 99, 230 |
| HpaII | CCGG | 1 cut(s) | 227 |
| Hpy166II | GTNNAC | 1 cut(s) | 373 |
| Hpy188III | TCNNGA | 4 cut(s) | 134, 201, 227, 296 |
| Hpy8I | GTNNAC | 1 cut(s) | 373 |
| HpyAV | CCTTC | 2 cut(s) | 70, 325 |
| HpyCH4IV | ACGT | 2 cut(s) | 169, 300 |
| HpyCH4V | TGCA | 2 cut(s) | 86, 113 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 267 |
| HpyF3I | CTNAG | 1 cut(s) | 431 |
| HpySE526I | ACGT | 2 cut(s) | 169, 300 |
| Hsp92I | GRCGYC | 2 cut(s) | 261, 419 |
| Hsp92II | CATG | 3 cut(s) | 137, 379, 412 |
| HspAI | GCGC | 3 cut(s) | 246, 261, 419 |
| KasI | GGCGCC | 2 cut(s) | 260, 418 |
| Kpn2I | TCCGGA | 1 cut(s) | 226 |
| LmnI | GCTCC | 1 cut(s) | 146 |
| LpnPI | CCDG | 5 cut(s) | 99, 240, 264, 290, 389 |
| MaeI | CTAG | 2 cut(s) | 284, 296 |
| MaeII | ACGT | 2 cut(s) | 169, 300 |
| MaeIII | GTNAC | 3 cut(s) | 106, 170, 334 |
| MboII | GAAGA | 2 cut(s) | 199, 377 |
| MlsI | TGGCCA | 1 cut(s) | 407 |
| MluCI | AATT | 6 cut(s) | 5, 120, 141, 196, 235, 291 |
| MluNI | TGGCCA | 1 cut(s) | 407 |
| Mly113I | GGCGCC | 2 cut(s) | 261, 419 |
| MlyI | GAGTC | 2 cut(s) | 43, 239 |
| MnlI | CCTC | 7 cut(s) | 39, 247, 251, 321, 361, 385, 411 |
| Mox20I | TGGCCA | 1 cut(s) | 407 |
| MroI | TCCGGA | 1 cut(s) | 226 |
| MscI | TGGCCA | 1 cut(s) | 407 |
| MslI | CAYNNNNRTG | 2 cut(s) | 182, 413 |
| Msp20I | TGGCCA | 1 cut(s) | 407 |
| MspI | CCGG | 1 cut(s) | 227 |
| MvnI | CGCG | 1 cut(s) | 246 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 267 |
| NarI | GGCGCC | 2 cut(s) | 261, 419 |
| NdeI | CATATG | 1 cut(s) | 28 |
| NlaIII | CATG | 3 cut(s) | 137, 379, 412 |
| NlaIV | GGNNCC | 3 cut(s) | 262, 361, 420 |
| NmuCI | GTSAC | 1 cut(s) | 170 |
| PagI | TCATGA | 1 cut(s) | 133 |
| PfeI | GAWTC | 1 cut(s) | 99 |
| PleI | GAGTC | 2 cut(s) | 43, 238 |
| PluTI | GGCGCC | 2 cut(s) | 264, 422 |
| PpsI | GAGTC | 2 cut(s) | 43, 238 |
| PspEI | GGTNACC | 1 cut(s) | 334 |
| PspN4I | GGNNCC | 3 cut(s) | 262, 361, 420 |
| PspPI | GGNCC | 1 cut(s) | 307 |
| PstI | CTGCAG | 1 cut(s) | 115 |
| RseI | CAYNNNNRTG | 2 cut(s) | 182, 413 |
| Sau96I | GGNCC | 1 cut(s) | 307 |
| SchI | GAGTC | 2 cut(s) | 43, 239 |
| SetI | ASST | 9 cut(s) | 62, 131, 141, 151, 172, 303, 336, 372, 403 |
| SfcI | CTRYAG | 1 cut(s) | 111 |
| SfoI | GGCGCC | 2 cut(s) | 262, 420 |
| SinI | GGWCC | 1 cut(s) | 307 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 182, 413 |
| Sse9I | AATT | 6 cut(s) | 5, 120, 141, 196, 235, 291 |
| SspDI | GGCGCC | 2 cut(s) | 260, 418 |
| SspMI | CTAG | 2 cut(s) | 284, 296 |
| StyI | CCWWGG | 1 cut(s) | 207 |
| TaiI | ACGT | 2 cut(s) | 172, 303 |
| TaqI | TCGA | 2 cut(s) | 97, 200 |
| TasI | AATT | 6 cut(s) | 5, 120, 141, 196, 235, 291 |
| TfiI | GAWTC | 1 cut(s) | 99 |
| TseFI | GTSAC | 1 cut(s) | 170 |
| Tsp45I | GTSAC | 1 cut(s) | 170 |
| TspDTI | ATGAA | 2 cut(s) | 122, 167 |
| TspGWI | ACGGA | 1 cut(s) | 372 |
| VpaK11BI | GGWCC | 1 cut(s) | 307 |
| XapI | RAATTY | 1 cut(s) | 5 |
| XbaI | TCTAGA | 1 cut(s) | 295 |
| XspI | CTAG | 2 cut(s) | 284, 296 |