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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 615 |
| AccII | CGCG | 1 cut(s) | 621 |
| AclWI | GGATC | 1 cut(s) | 503 |
| AcsI | RAATTY | 1 cut(s) | 380 |
| AfaI | GTAC | 1 cut(s) | 247 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 632 |
| AgsI | TTSAA | 3 cut(s) | 328, 341, 509 |
| AjiI | CACGTC | 1 cut(s) | 136 |
| AjnI | CCWGG | 1 cut(s) | 129 |
| AluBI | AGCT | 6 cut(s) | 155, 161, 300, 309, 514, 524 |
| AluI | AGCT | 6 cut(s) | 155, 161, 300, 309, 514, 524 |
| Alw21I | GWGCWC | 1 cut(s) | 516 |
| AlwI | GGATC | 1 cut(s) | 503 |
| Ama87I | CYCGRG | 1 cut(s) | 119 |
| AoxI | GGCC | 1 cut(s) | 93 |
| ApoI | RAATTY | 1 cut(s) | 380 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 357 |
| AspLEI | GCGC | 2 cut(s) | 623, 639 |
| AsuHPI | GGTGA | 1 cut(s) | 211 |
| AvaI | CYCGRG | 1 cut(s) | 119 |
| BanII | GRGCYC | 1 cut(s) | 516 |
| BbsI | GAAGAC | 1 cut(s) | 428 |
| Bbv12I | GWGCWC | 1 cut(s) | 516 |
| BccI | CCATC | 5 cut(s) | 92, 215, 370, 448, 486 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 467, 501 |
| BciT130I | CCWGG | 1 cut(s) | 131 |
| BciVI | GTATCC | 1 cut(s) | 103 |
| BclI | TGATCA | 1 cut(s) | 219 |
| BfaI | CTAG | 3 cut(s) | 51, 126, 243 |
| BfmI | CTRYAG | 1 cut(s) | 486 |
| BfoI | RGCGCY | 1 cut(s) | 640 |
| BfuI | GTATCC | 1 cut(s) | 103 |
| Bme1390I | CCNGG | 1 cut(s) | 131 |
| BmeT110I | CYCGRG | 1 cut(s) | 119 |
| BmgBI | CACGTC | 1 cut(s) | 136 |
| BmrFI | CCNGG | 1 cut(s) | 131 |
| BmrI | ACTGGG | 1 cut(s) | 358 |
| BmsI | GCATC | 2 cut(s) | 94, 188 |
| BmuI | ACTGGG | 1 cut(s) | 358 |
| BpiI | GAAGAC | 1 cut(s) | 428 |
| BpuEI | CTTGAG | 2 cut(s) | 74, 141 |
| Bsa29I | ATCGAT | 1 cut(s) | 477 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 632 |
| Bse1I | ACTGG | 2 cut(s) | 49, 353 |
| BseBI | CCWGG | 1 cut(s) | 131 |
| BseCI | ATCGAT | 1 cut(s) | 477 |
| BseGI | GGATG | 5 cut(s) | 179, 210, 237, 264, 497 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 632 |
| BseNI | ACTGG | 2 cut(s) | 49, 353 |
| Bsh1236I | CGCG | 1 cut(s) | 621 |
| BshFI | GGCC | 1 cut(s) | 95 |
| BshVI | ATCGAT | 1 cut(s) | 477 |
| BsiHKAI | GWGCWC | 1 cut(s) | 516 |
| BsiHKCI | CYCGRG | 1 cut(s) | 119 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 632 |
| BsnI | GGCC | 1 cut(s) | 95 |
| BsoBI | CYCGRG | 1 cut(s) | 119 |
| Bsp1286I | GDGCHC | 1 cut(s) | 516 |
| Bsp143I | GATC | 2 cut(s) | 219, 495 |
| BspANI | GGCC | 1 cut(s) | 95 |
| BspDI | ATCGAT | 1 cut(s) | 477 |
| BspFNI | CGCG | 1 cut(s) | 621 |
| BspHI | TCATGA | 1 cut(s) | 544 |
| BspMAI | CTGCAG | 1 cut(s) | 490 |
| BspPI | GGATC | 1 cut(s) | 503 |
| BsrI | ACTGG | 2 cut(s) | 49, 353 |
| BssMI | GATC | 2 cut(s) | 219, 495 |
| Bst2UI | CCWGG | 1 cut(s) | 131 |
| Bst4CI | ACNGT | 2 cut(s) | 145, 334 |
| BstC8I | GCNNGC | 3 cut(s) | 83, 153, 302 |
| BstDEI | CTNAG | 2 cut(s) | 184, 627 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 630 |
| BstF5I | GGATG | 5 cut(s) | 179, 210, 237, 264, 497 |
| BstFNI | CGCG | 1 cut(s) | 621 |
| BstH2I | RGCGCY | 1 cut(s) | 640 |
| BstHHI | GCGC | 2 cut(s) | 623, 639 |
| BstKTI | GATC | 2 cut(s) | 222, 498 |
| BstMBI | GATC | 2 cut(s) | 219, 495 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 167, 176, 306 |
| BstNI | CCWGG | 1 cut(s) | 131 |
| BstSCI | CCNGG | 1 cut(s) | 129 |
| BstSFI | CTRYAG | 1 cut(s) | 486 |
| BstUI | CGCG | 1 cut(s) | 621 |
| BstV2I | GAAGAC | 1 cut(s) | 428 |
| Bsu15I | ATCGAT | 1 cut(s) | 477 |
| BsuI | GTATCC | 1 cut(s) | 103 |
| BsuRI | GGCC | 1 cut(s) | 95 |
| BsuTUI | ATCGAT | 1 cut(s) | 477 |
| BtgZI | GCGATG | 1 cut(s) | 422 |
| BtrI | CACGTC | 1 cut(s) | 136 |
| BtsCI | GGATG | 5 cut(s) | 179, 210, 237, 264, 497 |
| Cac8I | GCNNGC | 3 cut(s) | 83, 153, 302 |
| CciI | TCATGA | 1 cut(s) | 544 |
| CfoI | GCGC | 2 cut(s) | 623, 639 |
| ClaI | ATCGAT | 1 cut(s) | 477 |
| Csp6I | GTAC | 1 cut(s) | 246 |
| CviAII | CATG | 1 cut(s) | 545 |
| CviQI | GTAC | 1 cut(s) | 246 |
| DdeI | CTNAG | 2 cut(s) | 184, 627 |
| DpnI | GATC | 2 cut(s) | 221, 497 |
| DpnII | GATC | 2 cut(s) | 219, 495 |
| Ecl136II | GAGCTC | 1 cut(s) | 514 |
| Eco24I | GRGCYC | 1 cut(s) | 516 |
| Eco32I | GATATC | 2 cut(s) | 56, 397 |
| Eco53kI | GAGCTC | 1 cut(s) | 514 |
| Eco88I | CYCGRG | 1 cut(s) | 119 |
| EcoICRI | GAGCTC | 1 cut(s) | 514 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 630 |
| EcoRI | GAATTC | 1 cut(s) | 380 |
| EcoRII | CCWGG | 1 cut(s) | 129 |
| EcoRV | GATATC | 2 cut(s) | 56, 397 |
| EcoT38I | GRGCYC | 1 cut(s) | 516 |
| FaeI | CATG | 1 cut(s) | 548 |
| FatI | CATG | 1 cut(s) | 544 |
| FauNDI | CATATG | 1 cut(s) | 403 |
| FbaI | TGATCA | 1 cut(s) | 219 |
| FokI | GGATG | 5 cut(s) | 166, 197, 244, 251, 504 |
| FriOI | GRGCYC | 1 cut(s) | 516 |
| FspBI | CTAG | 3 cut(s) | 51, 126, 243 |
| GlaI | GCGC | 2 cut(s) | 622, 638 |
| HaeII | RGCGCY | 1 cut(s) | 640 |
| HaeIII | GGCC | 1 cut(s) | 95 |
| HhaI | GCGC | 2 cut(s) | 623, 639 |
| Hin1II | CATG | 1 cut(s) | 548 |
| Hin6I | GCGC | 2 cut(s) | 621, 637 |
| HinP1I | GCGC | 2 cut(s) | 621, 637 |
| HindIII | AAGCTT | 1 cut(s) | 159 |
| HinfI | GANTC | 8 cut(s) | 102, 115, 235, 272, 424, 474, 579, 605 |
| HphI | GGTGA | 1 cut(s) | 211 |
| Hpy188III | TCNNGA | 9 cut(s) | 51, 71, 119, 284, 328, 338, 509, 545, 576 |
| HpyAV | CCTTC | 2 cut(s) | 325, 445 |
| HpyCH4III | ACNGT | 2 cut(s) | 145, 334 |
| HpyCH4IV | ACGT | 1 cut(s) | 135 |
| HpyCH4V | TGCA | 3 cut(s) | 29, 449, 488 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 167, 176, 306 |
| HpyF3I | CTNAG | 2 cut(s) | 184, 627 |
| HpySE526I | ACGT | 1 cut(s) | 135 |
| Hsp92II | CATG | 1 cut(s) | 548 |
| HspAI | GCGC | 2 cut(s) | 621, 637 |
| Ksp22I | TGATCA | 1 cut(s) | 219 |
| Kzo9I | GATC | 2 cut(s) | 219, 495 |
| LmnI | GCTCC | 2 cut(s) | 521, 628 |
| LweI | GCATC | 2 cut(s) | 94, 188 |
| MaeI | CTAG | 3 cut(s) | 51, 126, 243 |
| MaeII | ACGT | 1 cut(s) | 135 |
| MaeIII | GTNAC | 3 cut(s) | 5, 269, 481 |
| MalI | GATC | 2 cut(s) | 221, 497 |
| MboI | GATC | 2 cut(s) | 219, 495 |
| MboII | GAAGA | 2 cut(s) | 433, 574 |
| MhlI | GDGCHC | 1 cut(s) | 516 |
| MluCI | AATT | 4 cut(s) | 17, 380, 571, 610 |
| MlyI | GAGTC | 3 cut(s) | 266, 418, 614 |
| MnlI | CCTC | 2 cut(s) | 181, 626 |
| MroXI | GAANNNNTTC | 1 cut(s) | 357 |
| MseI | TTAA | 2 cut(s) | 366, 462 |
| MslI | CAYNNNNRTG | 3 cut(s) | 215, 230, 557 |
| MspR9I | CCNGG | 1 cut(s) | 131 |
| MvaI | CCWGG | 1 cut(s) | 131 |
| MvnI | CGCG | 1 cut(s) | 621 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 167, 176, 306 |
| NdeI | CATATG | 1 cut(s) | 403 |
| NdeII | GATC | 2 cut(s) | 219, 495 |
| NlaIII | CATG | 1 cut(s) | 548 |
| NmuCI | GTSAC | 1 cut(s) | 269 |
| PaeR7I | CTCGAG | 1 cut(s) | 119 |
| PagI | TCATGA | 1 cut(s) | 544 |
| PdmI | GAANNNNTTC | 1 cut(s) | 357 |
| PfeI | GAWTC | 5 cut(s) | 102, 115, 235, 474, 579 |
| PleI | GAGTC | 3 cut(s) | 266, 418, 613 |
| PpsI | GAGTC | 3 cut(s) | 266, 418, 613 |
| PsiI | TTATAA | 1 cut(s) | 615 |
| Psp124BI | GAGCTC | 1 cut(s) | 516 |
| Psp6I | CCWGG | 1 cut(s) | 129 |
| PspGI | CCWGG | 1 cut(s) | 129 |
| PstI | CTGCAG | 1 cut(s) | 490 |
| RsaI | GTAC | 1 cut(s) | 247 |
| RsaNI | GTAC | 1 cut(s) | 246 |
| RseI | CAYNNNNRTG | 3 cut(s) | 215, 230, 557 |
| SacI | GAGCTC | 1 cut(s) | 516 |
| SaqAI | TTAA | 2 cut(s) | 366, 462 |
| Sau3AI | GATC | 2 cut(s) | 219, 495 |
| SchI | GAGTC | 3 cut(s) | 266, 418, 614 |
| ScrFI | CCNGG | 1 cut(s) | 131 |
| SduI | GDGCHC | 1 cut(s) | 516 |
| SfaNI | GCATC | 2 cut(s) | 94, 188 |
| SfcI | CTRYAG | 1 cut(s) | 486 |
| Sfr274I | CTCGAG | 1 cut(s) | 119 |
| SlaI | CTCGAG | 1 cut(s) | 119 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 215, 230, 557 |
| SmlI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| SmoI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| Sse9I | AATT | 4 cut(s) | 17, 380, 571, 610 |
| SspMI | CTAG | 3 cut(s) | 51, 126, 243 |
| SstI | GAGCTC | 1 cut(s) | 516 |
| StyD4I | CCNGG | 1 cut(s) | 129 |
| TaaI | ACNGT | 2 cut(s) | 145, 334 |
| TaiI | ACGT | 1 cut(s) | 138 |
| TaqI | TCGA | 4 cut(s) | 120, 472, 477, 575 |
| TasI | AATT | 4 cut(s) | 17, 380, 571, 610 |
| TfiI | GAWTC | 5 cut(s) | 102, 115, 235, 474, 579 |
| Tru1I | TTAA | 2 cut(s) | 366, 462 |
| Tru9I | TTAA | 2 cut(s) | 366, 462 |
| TseFI | GTSAC | 1 cut(s) | 269 |
| Tsp45I | GTSAC | 1 cut(s) | 269 |
| TspDTI | ATGAA | 1 cut(s) | 542 |
| TspGWI | ACGGA | 2 cut(s) | 244, 257 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 630 |
| XapI | RAATTY | 1 cut(s) | 380 |
| XbaI | TCTAGA | 1 cut(s) | 50 |
| XhoI | CTCGAG | 1 cut(s) | 119 |
| XmnI | GAANNNNTTC | 1 cut(s) | 357 |
| XspI | CTAG | 3 cut(s) | 51, 126, 243 |