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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 121 |
| AciI | CCGC | 3 cut(s) | 508, 521, 765 |
| AclWI | GGATC | 3 cut(s) | 141, 443, 697 |
| AcvI | CACGTG | 2 cut(s) | 530, 548 |
| AcyI | GRCGYC | 1 cut(s) | 190 |
| AdeI | CACNNNGTG | 1 cut(s) | 533 |
| AfaI | GTAC | 1 cut(s) | 800 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 64, 318, 549, 622 |
| AflIII | ACRYGT | 2 cut(s) | 527, 545 |
| AgsI | TTSAA | 5 cut(s) | 307, 419, 709, 856, 863 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 335 |
| AjnI | CCWGG | 1 cut(s) | 117 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 255, 287 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 125, 157 |
| AluBI | AGCT | 5 cut(s) | 247, 257, 454, 476, 737 |
| AluI | AGCT | 5 cut(s) | 247, 257, 454, 476, 737 |
| Alw21I | GWGCWC | 3 cut(s) | 643, 776, 876 |
| Alw44I | GTGCAC | 3 cut(s) | 639, 772, 872 |
| AlwI | GGATC | 3 cut(s) | 141, 443, 697 |
| ApaLI | GTGCAC | 3 cut(s) | 639, 772, 872 |
| ApeKI | GCWGC | 1 cut(s) | 884 |
| AspA2I | CCTAGG | 1 cut(s) | 620 |
| AspS9I | GGNCC | 1 cut(s) | 778 |
| AsuC2I | CCSGG | 1 cut(s) | 131 |
| AsuHPI | GGTGA | 1 cut(s) | 832 |
| AvaII | GGWCC | 1 cut(s) | 778 |
| AvrII | CCTAGG | 1 cut(s) | 620 |
| BaeGI | GKGCMC | 4 cut(s) | 643, 754, 776, 876 |
| BanI | GGYRCC | 1 cut(s) | 121 |
| BauI | CACGAG | 1 cut(s) | 439 |
| BbrPI | CACGTG | 2 cut(s) | 530, 548 |
| BbsI | GAAGAC | 1 cut(s) | 870 |
| Bbv12I | GWGCWC | 3 cut(s) | 643, 776, 876 |
| BbvI | GCAGC | 1 cut(s) | 896 |
| BccI | CCATC | 1 cut(s) | 815 |
| BceAI | ACGGC | 1 cut(s) | 561 |
| BciT130I | CCWGG | 1 cut(s) | 119 |
| BciVI | GTATCC | 2 cut(s) | 517, 578 |
| BcnI | CCSGG | 1 cut(s) | 131 |
| BfaI | CTAG | 5 cut(s) | 15, 260, 573, 621, 734 |
| BfmI | CTRYAG | 1 cut(s) | 471 |
| BfuI | GTATCC | 2 cut(s) | 517, 578 |
| BisI | GCNGC | 1 cut(s) | 885 |
| BlnI | CCTAGG | 1 cut(s) | 620 |
| BlsI | GCNGC | 1 cut(s) | 886 |
| Bme1390I | CCNGG | 2 cut(s) | 119, 131 |
| Bme18I | GGWCC | 1 cut(s) | 778 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 335 |
| BmgT120I | GGNCC | 1 cut(s) | 778 |
| BmiI | GGNNCC | 1 cut(s) | 123 |
| BmrFI | CCNGG | 2 cut(s) | 119, 131 |
| BmsI | GCATC | 2 cut(s) | 174, 618 |
| BpiI | GAAGAC | 1 cut(s) | 870 |
| BpuEI | CTTGAG | 1 cut(s) | 153 |
| BpuMI | CCSGG | 1 cut(s) | 131 |
| Bsa29I | ATCGAT | 1 cut(s) | 682 |
| BsaAI | YACGTR | 2 cut(s) | 530, 548 |
| BsaBI | GATNNNNATC | 2 cut(s) | 688, 834 |
| BsaHI | GRCGYC | 1 cut(s) | 190 |
| BsaJI | CCNNGG | 2 cut(s) | 96, 620 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 209, 239, 544, 574 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 64, 318, 549, 622 |
| Bse3DI | GCAATG | 1 cut(s) | 283 |
| Bse8I | GATNNNNATC | 2 cut(s) | 688, 834 |
| BseBI | CCWGG | 1 cut(s) | 119 |
| BseCI | ATCGAT | 1 cut(s) | 682 |
| BseDI | CCNNGG | 2 cut(s) | 96, 620 |
| BseJI | GATNNNNATC | 2 cut(s) | 688, 834 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 64, 318, 549, 622 |
| BseMI | GCAATG | 1 cut(s) | 283 |
| BseMII | CTCAG | 2 cut(s) | 223, 773 |
| BseSI | GKGCMC | 4 cut(s) | 643, 754, 776, 876 |
| BseXI | GCAGC | 1 cut(s) | 896 |
| BshNI | GGYRCC | 1 cut(s) | 121 |
| BshVI | ATCGAT | 1 cut(s) | 682 |
| BsiHKAI | GWGCWC | 3 cut(s) | 643, 776, 876 |
| BsiSI | CCGG | 1 cut(s) | 131 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 64, 318, 549, 622 |
| BsmI | GAATGC | 1 cut(s) | 241 |
| Bsp1286I | GDGCHC | 4 cut(s) | 643, 754, 776, 876 |
| Bsp143I | GATC | 4 cut(s) | 133, 228, 435, 689 |
| BspACI | CCGC | 3 cut(s) | 508, 521, 765 |
| BspCNI | CTCAG | 2 cut(s) | 222, 774 |
| BspDI | ATCGAT | 1 cut(s) | 682 |
| BspLI | GGNNCC | 1 cut(s) | 123 |
| BspPI | GGATC | 3 cut(s) | 141, 443, 697 |
| BspT107I | GGYRCC | 1 cut(s) | 121 |
| BsrDI | GCAATG | 1 cut(s) | 283 |
| BssECI | CCNNGG | 2 cut(s) | 96, 620 |
| BssMI | GATC | 4 cut(s) | 133, 228, 435, 689 |
| BssNI | GRCGYC | 1 cut(s) | 190 |
| BssSI | CACGAG | 1 cut(s) | 439 |
| BssT1I | CCWWGG | 2 cut(s) | 96, 620 |
| Bst2BI | CACGAG | 1 cut(s) | 439 |
| Bst2UI | CCWGG | 1 cut(s) | 119 |
| Bst4CI | ACNGT | 2 cut(s) | 62, 413 |
| Bst6I | CTCTTC | 1 cut(s) | 258 |
| BstACI | GRCGYC | 1 cut(s) | 190 |
| BstBAI | YACGTR | 2 cut(s) | 530, 548 |
| BstC8I | GCNNGC | 4 cut(s) | 165, 632, 765, 882 |
| BstDEI | CTNAG | 3 cut(s) | 209, 477, 782 |
| BstEII | GGTNACC | 1 cut(s) | 67 |
| BstKTI | GATC | 4 cut(s) | 136, 231, 438, 692 |
| BstMBI | GATC | 4 cut(s) | 133, 228, 435, 689 |
| BstNI | CCWGG | 1 cut(s) | 119 |
| BstNSI | RCATGY | 3 cut(s) | 48, 167, 884 |
| BstPI | GGTNACC | 1 cut(s) | 67 |
| BstSCI | CCNGG | 2 cut(s) | 117, 129 |
| BstSFI | CTRYAG | 1 cut(s) | 471 |
| BstSLI | GKGCMC | 4 cut(s) | 643, 754, 776, 876 |
| BstV1I | GCAGC | 1 cut(s) | 896 |
| BstV2I | GAAGAC | 1 cut(s) | 870 |
| BstX2I | RGATCY | 1 cut(s) | 133 |
| BstYI | RGATCY | 1 cut(s) | 133 |
| Bsu15I | ATCGAT | 1 cut(s) | 682 |
| BsuI | GTATCC | 2 cut(s) | 517, 578 |
| BsuTUI | ATCGAT | 1 cut(s) | 682 |
| Cac8I | GCNNGC | 4 cut(s) | 165, 632, 765, 882 |
| Cfr13I | GGNCC | 1 cut(s) | 778 |
| ClaI | ATCGAT | 1 cut(s) | 682 |
| CseI | GACGC | 1 cut(s) | 198 |
| Csp6I | GTAC | 1 cut(s) | 799 |
| CviAII | CATG | 6 cut(s) | 31, 45, 164, 313, 485, 881 |
| CviJI | RGCY | 7 cut(s) | 247, 257, 389, 454, 476, 576, 737 |
| CviKI_1 | RGCY | 7 cut(s) | 247, 257, 389, 454, 476, 576, 737 |
| CviQI | GTAC | 1 cut(s) | 799 |
| DdeI | CTNAG | 3 cut(s) | 209, 477, 782 |
| DpnI | GATC | 4 cut(s) | 135, 230, 437, 691 |
| DpnII | GATC | 4 cut(s) | 133, 228, 435, 689 |
| DraIII | CACNNNGTG | 1 cut(s) | 533 |
| DriI | GACNNNNNGTC | 1 cut(s) | 335 |
| Eam1104I | CTCTTC | 1 cut(s) | 258 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 335 |
| EarI | CTCTTC | 1 cut(s) | 258 |
| Eco130I | CCWWGG | 2 cut(s) | 96, 620 |
| Eco47I | GGWCC | 1 cut(s) | 778 |
| Eco72I | CACGTG | 2 cut(s) | 530, 548 |
| Eco91I | GGTNACC | 1 cut(s) | 67 |
| EcoO65I | GGTNACC | 1 cut(s) | 67 |
| EcoRII | CCWGG | 1 cut(s) | 117 |
| EcoT14I | CCWWGG | 2 cut(s) | 96, 620 |
| ErhI | CCWWGG | 2 cut(s) | 96, 620 |
| FaeI | CATG | 6 cut(s) | 34, 48, 167, 316, 488, 884 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 786, 818 |
| FatI | CATG | 6 cut(s) | 30, 44, 163, 312, 484, 880 |
| FauI | CCCGC | 1 cut(s) | 772 |
| FauNDI | CATATG | 1 cut(s) | 195 |
| Fnu4HI | GCNGC | 1 cut(s) | 885 |
| Fsp4HI | GCNGC | 1 cut(s) | 885 |
| FspBI | CTAG | 5 cut(s) | 15, 260, 573, 621, 734 |
| GluI | GCNGC | 1 cut(s) | 885 |
| HapII | CCGG | 1 cut(s) | 131 |
| HgaI | GACGC | 1 cut(s) | 198 |
| Hin1I | GRCGYC | 1 cut(s) | 190 |
| Hin1II | CATG | 6 cut(s) | 34, 48, 167, 316, 488, 884 |
| HinfI | GANTC | 4 cut(s) | 18, 38, 82, 287 |
| HpaII | CCGG | 1 cut(s) | 131 |
| HphI | GGTGA | 1 cut(s) | 832 |
| Hpy166II | GTNNAC | 6 cut(s) | 283, 329, 641, 774, 799, 874 |
| Hpy188I | TCNGA | 1 cut(s) | 212 |
| Hpy188III | TCNNGA | 4 cut(s) | 181, 232, 260, 439 |
| Hpy8I | GTNNAC | 6 cut(s) | 283, 329, 641, 774, 799, 874 |
| Hpy99I | CGWCG | 1 cut(s) | 192 |
| HpyAV | CCTTC | 3 cut(s) | 301, 385, 494 |
| HpyCH4III | ACNGT | 2 cut(s) | 62, 413 |
| HpyCH4IV | ACGT | 4 cut(s) | 529, 547, 637, 770 |
| HpyCH4V | TGCA | 9 cut(s) | 148, 239, 634, 641, 717, 774, 806, 874, 884 |
| HpyF3I | CTNAG | 3 cut(s) | 209, 477, 782 |
| HpySE526I | ACGT | 4 cut(s) | 529, 547, 637, 770 |
| Hsp92I | GRCGYC | 1 cut(s) | 190 |
| Hsp92II | CATG | 6 cut(s) | 34, 48, 167, 316, 488, 884 |
| Kzo9I | GATC | 4 cut(s) | 133, 228, 435, 689 |
| Lsp1109I | GCAGC | 1 cut(s) | 896 |
| LweI | GCATC | 2 cut(s) | 174, 618 |
| MaeI | CTAG | 5 cut(s) | 15, 260, 573, 621, 734 |
| MaeII | ACGT | 4 cut(s) | 529, 547, 637, 770 |
| MaeIII | GTNAC | 2 cut(s) | 67, 337 |
| MalI | GATC | 4 cut(s) | 135, 230, 437, 691 |
| MboI | GATC | 4 cut(s) | 133, 228, 435, 689 |
| MboII | GAAGA | 6 cut(s) | 275, 821, 824, 827, 830, 875 |
| MfeI | CAATTG | 1 cut(s) | 693 |
| MflI | RGATCY | 1 cut(s) | 133 |
| MhlI | GDGCHC | 4 cut(s) | 643, 754, 776, 876 |
| MluCI | AATT | 3 cut(s) | 354, 647, 693 |
| MlyI | GAGTC | 2 cut(s) | 12, 32 |
| MnlI | CCTC | 8 cut(s) | 305, 312, 548, 627, 650, 654, 721, 841 |
| MslI | CAYNNNNRTG | 3 cut(s) | 669, 684, 879 |
| MspI | CCGG | 1 cut(s) | 131 |
| MspR9I | CCNGG | 2 cut(s) | 119, 131 |
| MunI | CAATTG | 1 cut(s) | 693 |
| Mva1269I | GAATGC | 1 cut(s) | 241 |
| MvaI | CCWGG | 1 cut(s) | 119 |
| NciI | CCSGG | 1 cut(s) | 131 |
| NdeI | CATATG | 1 cut(s) | 195 |
| NdeII | GATC | 4 cut(s) | 133, 228, 435, 689 |
| NlaIII | CATG | 6 cut(s) | 34, 48, 167, 316, 488, 884 |
| NlaIV | GGNNCC | 1 cut(s) | 123 |
| NmuCI | GTSAC | 1 cut(s) | 337 |
| NspI | RCATGY | 3 cut(s) | 48, 167, 884 |
| PaeI | GCATGC | 2 cut(s) | 167, 884 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 634, 767 |
| PctI | GAATGC | 1 cut(s) | 241 |
| PfeI | GAWTC | 2 cut(s) | 82, 287 |
| PkrI | GCNGC | 1 cut(s) | 886 |
| PleI | GAGTC | 2 cut(s) | 12, 32 |
| PmaCI | CACGTG | 2 cut(s) | 530, 548 |
| PmlI | CACGTG | 2 cut(s) | 530, 548 |
| PpsI | GAGTC | 2 cut(s) | 12, 32 |
| Ppu21I | YACGTR | 2 cut(s) | 530, 548 |
| Psp6I | CCWGG | 1 cut(s) | 117 |
| PspCI | CACGTG | 2 cut(s) | 530, 548 |
| PspEI | GGTNACC | 1 cut(s) | 67 |
| PspGI | CCWGG | 1 cut(s) | 117 |
| PspN4I | GGNNCC | 1 cut(s) | 123 |
| PspPI | GGNCC | 1 cut(s) | 778 |
| PsuI | RGATCY | 1 cut(s) | 133 |
| RsaI | GTAC | 1 cut(s) | 800 |
| RsaNI | GTAC | 1 cut(s) | 799 |
| RseI | CAYNNNNRTG | 3 cut(s) | 669, 684, 879 |
| SatI | GCNGC | 1 cut(s) | 885 |
| Sau3AI | GATC | 4 cut(s) | 133, 228, 435, 689 |
| Sau96I | GGNCC | 1 cut(s) | 778 |
| SchI | GAGTC | 2 cut(s) | 12, 32 |
| ScrFI | CCNGG | 2 cut(s) | 119, 131 |
| SduI | GDGCHC | 4 cut(s) | 643, 754, 776, 876 |
| SfaNI | GCATC | 2 cut(s) | 174, 618 |
| SfcI | CTRYAG | 1 cut(s) | 471 |
| SinI | GGWCC | 1 cut(s) | 778 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 669, 684, 879 |
| SmlI | CTYRAG | 1 cut(s) | 168 |
| SmoI | CTYRAG | 1 cut(s) | 168 |
| SphI | GCATGC | 2 cut(s) | 167, 884 |
| Sse9I | AATT | 3 cut(s) | 354, 647, 693 |
| SsiI | CCGC | 3 cut(s) | 508, 521, 765 |
| SspI | AATATT | 1 cut(s) | 105 |
| SspMI | CTAG | 5 cut(s) | 15, 260, 573, 621, 734 |
| StyD4I | CCNGG | 2 cut(s) | 117, 129 |
| StyI | CCWWGG | 2 cut(s) | 96, 620 |
| TaaI | ACNGT | 2 cut(s) | 62, 413 |
| TaiI | ACGT | 4 cut(s) | 532, 550, 640, 773 |
| TaqI | TCGA | 5 cut(s) | 5, 21, 227, 498, 682 |
| TasI | AATT | 3 cut(s) | 354, 647, 693 |
| TfiI | GAWTC | 2 cut(s) | 82, 287 |
| TseFI | GTSAC | 1 cut(s) | 337 |
| TseI | GCWGC | 1 cut(s) | 884 |
| Tsp45I | GTSAC | 1 cut(s) | 337 |
| TspDTI | ATGAA | 2 cut(s) | 24, 437 |
| TspGWI | ACGGA | 2 cut(s) | 448, 791 |
| VneI | GTGCAC | 3 cut(s) | 639, 772, 872 |
| VpaK11BI | GGWCC | 1 cut(s) | 778 |
| XbaI | TCTAGA | 1 cut(s) | 259 |
| XceI | RCATGY | 3 cut(s) | 48, 167, 884 |
| XmaJI | CCTAGG | 1 cut(s) | 620 |
| XspI | CTAG | 5 cut(s) | 15, 260, 573, 621, 734 |