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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 79, 361 |
| AcoI | YGGCCR | 1 cut(s) | 504 |
| AcsI | RAATTY | 1 cut(s) | 428 |
| AcyI | GRCGYC | 1 cut(s) | 638 |
| AfaI | GTAC | 1 cut(s) | 248 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 519, 620 |
| AgsI | TTSAA | 2 cut(s) | 296, 376 |
| AjiI | CACGTC | 1 cut(s) | 136 |
| AjnI | CCWGG | 2 cut(s) | 129, 710 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 288, 320, 539, 571 |
| AluBI | AGCT | 4 cut(s) | 155, 161, 337, 518 |
| AluI | AGCT | 4 cut(s) | 155, 161, 337, 518 |
| Alw26I | GTCTC | 4 cut(s) | 292, 362, 496, 603 |
| AoxI | GGCC | 4 cut(s) | 504, 510, 533, 678 |
| ApeKI | GCWGC | 1 cut(s) | 179 |
| ApoI | RAATTY | 1 cut(s) | 428 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 405 |
| AspLEI | GCGC | 1 cut(s) | 690 |
| AspS9I | GGNCC | 2 cut(s) | 511, 534 |
| AsuC2I | CCSGG | 1 cut(s) | 615 |
| AsuII | TTCGAA | 1 cut(s) | 545 |
| BalI | TGGCCA | 1 cut(s) | 506 |
| BbsI | GAAGAC | 1 cut(s) | 273 |
| BbvI | GCAGC | 1 cut(s) | 191 |
| BccI | CCATC | 4 cut(s) | 92, 215, 342, 496 |
| BciT130I | CCWGG | 2 cut(s) | 131, 712 |
| BciVI | GTATCC | 1 cut(s) | 544 |
| BcnI | CCSGG | 1 cut(s) | 615 |
| BcoDI | GTCTC | 4 cut(s) | 292, 362, 496, 603 |
| BfaI | CTAG | 4 cut(s) | 119, 126, 338, 519 |
| BfuI | GTATCC | 1 cut(s) | 544 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 188 |
| BisI | GCNGC | 1 cut(s) | 180 |
| BlsI | GCNGC | 1 cut(s) | 181 |
| Bme1390I | CCNGG | 3 cut(s) | 131, 615, 712 |
| BmgBI | CACGTC | 1 cut(s) | 136 |
| BmgT120I | GGNCC | 2 cut(s) | 511, 534 |
| BmiI | GGNNCC | 1 cut(s) | 513 |
| BmrFI | CCNGG | 3 cut(s) | 131, 615, 712 |
| BmsI | GCATC | 2 cut(s) | 442, 513 |
| BpiI | GAAGAC | 1 cut(s) | 273 |
| BpmI | CTGGAG | 1 cut(s) | 227 |
| Bpu10I | CCTNAGC | 1 cut(s) | 333 |
| Bpu14I | TTCGAA | 1 cut(s) | 545 |
| BpuEI | CTTGAG | 2 cut(s) | 74, 141 |
| BpuMI | CCSGG | 1 cut(s) | 615 |
| BsaHI | GRCGYC | 1 cut(s) | 638 |
| BsaI | GGTCTC | 1 cut(s) | 292 |
| BsaJI | CCNNGG | 3 cut(s) | 507, 537, 710 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 519, 620 |
| Bse1I | ACTGG | 2 cut(s) | 49, 244 |
| Bse3DI | GCAATG | 1 cut(s) | 462 |
| BseBI | CCWGG | 2 cut(s) | 131, 712 |
| BseDI | CCNNGG | 3 cut(s) | 507, 537, 710 |
| BseGI | GGATG | 3 cut(s) | 210, 238, 528 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 519, 620 |
| BseMI | GCAATG | 1 cut(s) | 462 |
| BseMII | CTCAG | 1 cut(s) | 324 |
| BseNI | ACTGG | 2 cut(s) | 49, 244 |
| BseXI | GCAGC | 1 cut(s) | 191 |
| BseYI | CCCAGC | 1 cut(s) | 514 |
| BshFI | GGCC | 4 cut(s) | 506, 512, 535, 680 |
| BsiSI | CCGG | 1 cut(s) | 614 |
| BslFI | GGGAC | 1 cut(s) | 649 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 519, 620 |
| BsmAI | GTCTC | 4 cut(s) | 292, 362, 496, 603 |
| BsmBI | CGTCTC | 2 cut(s) | 496, 603 |
| BsmFI | GGGAC | 1 cut(s) | 649 |
| BsnI | GGCC | 4 cut(s) | 506, 512, 535, 680 |
| Bso31I | GGTCTC | 1 cut(s) | 292 |
| Bsp119I | TTCGAA | 1 cut(s) | 545 |
| Bsp143I | GATC | 1 cut(s) | 444 |
| Bsp19I | CCATGG | 1 cut(s) | 507 |
| BspACI | CCGC | 2 cut(s) | 79, 361 |
| BspANI | GGCC | 4 cut(s) | 506, 512, 535, 680 |
| BspCNI | CTCAG | 1 cut(s) | 325 |
| BspHI | TCATGA | 1 cut(s) | 601 |
| BspLI | GGNNCC | 1 cut(s) | 513 |
| BspT104I | TTCGAA | 1 cut(s) | 545 |
| BspTNI | GGTCTC | 1 cut(s) | 292 |
| BsrDI | GCAATG | 1 cut(s) | 462 |
| BsrI | ACTGG | 2 cut(s) | 49, 244 |
| BssECI | CCNNGG | 3 cut(s) | 507, 537, 710 |
| BssMI | GATC | 1 cut(s) | 444 |
| BssNI | GRCGYC | 1 cut(s) | 638 |
| BssT1I | CCWWGG | 1 cut(s) | 507 |
| Bst2UI | CCWGG | 2 cut(s) | 131, 712 |
| Bst4CI | ACNGT | 2 cut(s) | 145, 382 |
| BstACI | GRCGYC | 1 cut(s) | 638 |
| BstBI | TTCGAA | 1 cut(s) | 545 |
| BstC8I | GCNNGC | 1 cut(s) | 153 |
| BstDEI | CTNAG | 2 cut(s) | 184, 333 |
| BstDSI | CCRYGG | 2 cut(s) | 507, 537 |
| BstF5I | GGATG | 3 cut(s) | 210, 238, 528 |
| BstHHI | GCGC | 1 cut(s) | 690 |
| BstKTI | GATC | 1 cut(s) | 447 |
| BstMAI | GTCTC | 4 cut(s) | 292, 362, 496, 603 |
| BstMBI | GATC | 1 cut(s) | 444 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 167, 176, 188, 197, 334, 503, 532 |
| BstNI | CCWGG | 2 cut(s) | 131, 712 |
| BstSCI | CCNGG | 3 cut(s) | 129, 613, 710 |
| BstV1I | GCAGC | 1 cut(s) | 191 |
| BstV2I | GAAGAC | 1 cut(s) | 273 |
| BsuI | GTATCC | 1 cut(s) | 544 |
| BsuRI | GGCC | 4 cut(s) | 506, 512, 535, 680 |
| BtgI | CCRYGG | 2 cut(s) | 507, 537 |
| BtrI | CACGTC | 1 cut(s) | 136 |
| BtsCI | GGATG | 3 cut(s) | 210, 238, 528 |
| Cac8I | GCNNGC | 1 cut(s) | 153 |
| CciI | TCATGA | 1 cut(s) | 601 |
| CfoI | GCGC | 1 cut(s) | 690 |
| Cfr13I | GGNCC | 2 cut(s) | 511, 534 |
| CseI | GACGC | 1 cut(s) | 646 |
| Csp6I | GTAC | 1 cut(s) | 247 |
| CviAII | CATG | 2 cut(s) | 508, 602 |
| CviQI | GTAC | 1 cut(s) | 247 |
| DdeI | CTNAG | 2 cut(s) | 184, 333 |
| DpnI | GATC | 1 cut(s) | 446 |
| DpnII | GATC | 1 cut(s) | 444 |
| EaeI | YGGCCR | 1 cut(s) | 504 |
| EciI | GGCGGA | 1 cut(s) | 68 |
| Eco130I | CCWWGG | 1 cut(s) | 507 |
| Eco31I | GGTCTC | 1 cut(s) | 292 |
| Eco32I | GATATC | 1 cut(s) | 56 |
| EcoRI | GAATTC | 1 cut(s) | 428 |
| EcoRII | CCWGG | 2 cut(s) | 129, 710 |
| EcoRV | GATATC | 1 cut(s) | 56 |
| EcoT14I | CCWWGG | 1 cut(s) | 507 |
| ErhI | CCWWGG | 1 cut(s) | 507 |
| Esp3I | CGTCTC | 2 cut(s) | 496, 603 |
| FaeI | CATG | 2 cut(s) | 511, 605 |
| FaqI | GGGAC | 1 cut(s) | 649 |
| FatI | CATG | 2 cut(s) | 507, 601 |
| FauNDI | CATATG | 1 cut(s) | 228 |
| Fnu4HI | GCNGC | 1 cut(s) | 180 |
| FokI | GGATG | 3 cut(s) | 197, 245, 535 |
| Fsp4HI | GCNGC | 1 cut(s) | 180 |
| FspBI | CTAG | 4 cut(s) | 119, 126, 338, 519 |
| GlaI | GCGC | 1 cut(s) | 689 |
| GluI | GCNGC | 1 cut(s) | 180 |
| GsaI | CCCAGC | 1 cut(s) | 518 |
| GsuI | CTGGAG | 1 cut(s) | 227 |
| HaeIII | GGCC | 4 cut(s) | 506, 512, 535, 680 |
| HapII | CCGG | 1 cut(s) | 614 |
| HgaI | GACGC | 1 cut(s) | 646 |
| HhaI | GCGC | 1 cut(s) | 690 |
| Hin1I | GRCGYC | 1 cut(s) | 638 |
| Hin1II | CATG | 2 cut(s) | 511, 605 |
| Hin6I | GCGC | 1 cut(s) | 688 |
| HinP1I | GCGC | 1 cut(s) | 688 |
| HindIII | AAGCTT | 1 cut(s) | 159 |
| HinfI | GANTC | 7 cut(s) | 102, 115, 220, 236, 320, 586, 715 |
| HpaII | CCGG | 1 cut(s) | 614 |
| Hpy188I | TCNGA | 1 cut(s) | 400 |
| Hpy188III | TCNNGA | 7 cut(s) | 51, 119, 332, 376, 386, 583, 602 |
| HpyAV | CCTTC | 3 cut(s) | 270, 493, 541 |
| HpyCH4III | ACNGT | 2 cut(s) | 145, 382 |
| HpyCH4IV | ACGT | 2 cut(s) | 135, 312 |
| HpyCH4V | TGCA | 2 cut(s) | 455, 497 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 167, 176, 188, 197, 334, 503, 532 |
| HpyF3I | CTNAG | 2 cut(s) | 184, 333 |
| HpySE526I | ACGT | 2 cut(s) | 135, 312 |
| Hsp92I | GRCGYC | 1 cut(s) | 638 |
| Hsp92II | CATG | 2 cut(s) | 511, 605 |
| HspAI | GCGC | 1 cut(s) | 688 |
| Kzo9I | GATC | 1 cut(s) | 444 |
| LmnI | GCTCC | 2 cut(s) | 34, 246 |
| Lsp1109I | GCAGC | 1 cut(s) | 191 |
| LweI | GCATC | 2 cut(s) | 442, 513 |
| MaeI | CTAG | 4 cut(s) | 119, 126, 338, 519 |
| MaeII | ACGT | 2 cut(s) | 135, 312 |
| MaeIII | GTNAC | 2 cut(s) | 5, 317 |
| MalI | GATC | 1 cut(s) | 446 |
| MboI | GATC | 1 cut(s) | 444 |
| MboII | GAAGA | 4 cut(s) | 275, 278, 308, 602 |
| MlsI | TGGCCA | 1 cut(s) | 506 |
| MluCI | AATT | 1 cut(s) | 428 |
| MluNI | TGGCCA | 1 cut(s) | 506 |
| MlyI | GAGTC | 3 cut(s) | 214, 314, 580 |
| MnlI | CCTC | 4 cut(s) | 116, 181, 525, 651 |
| Mox20I | TGGCCA | 1 cut(s) | 506 |
| MroXI | GAANNNNTTC | 1 cut(s) | 405 |
| MscI | TGGCCA | 1 cut(s) | 506 |
| MseI | TTAA | 3 cut(s) | 414, 422, 575 |
| MslI | CAYNNNNRTG | 2 cut(s) | 215, 231 |
| Msp20I | TGGCCA | 1 cut(s) | 506 |
| MspI | CCGG | 1 cut(s) | 614 |
| MspR9I | CCNGG | 3 cut(s) | 131, 615, 712 |
| MvaI | CCWGG | 2 cut(s) | 131, 712 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 167, 176, 188, 197, 334, 503, 532 |
| NciI | CCSGG | 1 cut(s) | 615 |
| NcoI | CCATGG | 1 cut(s) | 507 |
| NdeI | CATATG | 1 cut(s) | 228 |
| NdeII | GATC | 1 cut(s) | 444 |
| NlaIII | CATG | 2 cut(s) | 511, 605 |
| NlaIV | GGNNCC | 1 cut(s) | 513 |
| NmuCI | GTSAC | 1 cut(s) | 317 |
| NspV | TTCGAA | 1 cut(s) | 545 |
| PagI | TCATGA | 1 cut(s) | 601 |
| PdmI | GAANNNNTTC | 1 cut(s) | 405 |
| PfeI | GAWTC | 4 cut(s) | 102, 115, 236, 715 |
| PkrI | GCNGC | 1 cut(s) | 181 |
| PleI | GAGTC | 3 cut(s) | 214, 314, 580 |
| PpsI | GAGTC | 3 cut(s) | 214, 314, 580 |
| Psp6I | CCWGG | 2 cut(s) | 129, 710 |
| PspFI | CCCAGC | 1 cut(s) | 514 |
| PspGI | CCWGG | 2 cut(s) | 129, 710 |
| PspN4I | GGNNCC | 1 cut(s) | 513 |
| PspPI | GGNCC | 2 cut(s) | 511, 534 |
| RsaI | GTAC | 1 cut(s) | 248 |
| RsaNI | GTAC | 1 cut(s) | 247 |
| RseI | CAYNNNNRTG | 2 cut(s) | 215, 231 |
| SaqAI | TTAA | 3 cut(s) | 414, 422, 575 |
| SatI | GCNGC | 1 cut(s) | 180 |
| Sau3AI | GATC | 1 cut(s) | 444 |
| Sau96I | GGNCC | 2 cut(s) | 511, 534 |
| SchI | GAGTC | 3 cut(s) | 214, 314, 580 |
| ScrFI | CCNGG | 3 cut(s) | 131, 615, 712 |
| SetI | ASST | 9 cut(s) | 12, 65, 138, 157, 163, 315, 339, 485, 520 |
| SfaNI | GCATC | 2 cut(s) | 442, 513 |
| SfuI | TTCGAA | 1 cut(s) | 545 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 215, 231 |
| SmlI | CTYRAG | 2 cut(s) | 89, 156 |
| SmoI | CTYRAG | 2 cut(s) | 89, 156 |
| Sse9I | AATT | 1 cut(s) | 428 |
| SsiI | CCGC | 2 cut(s) | 79, 361 |
| SspMI | CTAG | 4 cut(s) | 119, 126, 338, 519 |
| StyD4I | CCNGG | 3 cut(s) | 129, 613, 710 |
| StyI | CCWWGG | 1 cut(s) | 507 |
| TaaI | ACNGT | 2 cut(s) | 145, 382 |
| TaiI | ACGT | 2 cut(s) | 138, 315 |
| TaqI | TCGA | 2 cut(s) | 108, 545 |
| TasI | AATT | 1 cut(s) | 428 |
| TfiI | GAWTC | 4 cut(s) | 102, 115, 236, 715 |
| Tru1I | TTAA | 3 cut(s) | 414, 422, 575 |
| Tru9I | TTAA | 3 cut(s) | 414, 422, 575 |
| TseFI | GTSAC | 1 cut(s) | 317 |
| TseI | GCWGC | 1 cut(s) | 179 |
| Tsp45I | GTSAC | 1 cut(s) | 317 |
| TspDTI | ATGAA | 2 cut(s) | 272, 276 |
| TspGWI | ACGGA | 2 cut(s) | 305, 585 |
| XapI | RAATTY | 1 cut(s) | 428 |
| XbaI | TCTAGA | 1 cut(s) | 118 |
| XmnI | GAANNNNTTC | 1 cut(s) | 405 |
| XspI | CTAG | 4 cut(s) | 119, 126, 338, 519 |