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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 140 |
| AccII | CGCG | 1 cut(s) | 81 |
| AciI | CCGC | 3 cut(s) | 53, 81, 239 |
| AclWI | GGATC | 6 cut(s) | 63, 77, 84, 125, 138, 249 |
| AfaI | GTAC | 1 cut(s) | 265 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 140, 259, 260 |
| AgsI | TTSAA | 1 cut(s) | 125 |
| AluBI | AGCT | 1 cut(s) | 21 |
| AluI | AGCT | 1 cut(s) | 21 |
| Alw21I | GWGCWC | 1 cut(s) | 23 |
| AlwI | GGATC | 6 cut(s) | 63, 77, 84, 125, 138, 249 |
| Ama87I | CYCGRG | 1 cut(s) | 259 |
| AoxI | GGCC | 1 cut(s) | 14 |
| AsuC2I | CCSGG | 2 cut(s) | 260, 261 |
| AsuHPI | GGTGA | 1 cut(s) | 113 |
| AvaI | CYCGRG | 1 cut(s) | 259 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 255, 288 |
| BamHI | GGATCC | 1 cut(s) | 130 |
| BanII | GRGCYC | 1 cut(s) | 23 |
| Bbv12I | GWGCWC | 1 cut(s) | 23 |
| BccI | CCATC | 6 cut(s) | 98, 110, 149, 229, 277, 282 |
| BceAI | ACGGC | 1 cut(s) | 66 |
| BcnI | CCSGG | 2 cut(s) | 260, 261 |
| BfaI | CTAG | 1 cut(s) | 269 |
| Bme1390I | CCNGG | 2 cut(s) | 260, 261 |
| BmeT110I | CYCGRG | 1 cut(s) | 259 |
| BmiI | GGNNCC | 1 cut(s) | 132 |
| BmrFI | CCNGG | 2 cut(s) | 260, 261 |
| BmsI | GCATC | 1 cut(s) | 105 |
| BpuMI | CCSGG | 2 cut(s) | 260, 261 |
| BsaJI | CCNNGG | 2 cut(s) | 24, 259 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 140, 259, 260 |
| Bse1I | ACTGG | 1 cut(s) | 145 |
| BseDI | CCNNGG | 2 cut(s) | 24, 259 |
| BseGI | GGATG | 2 cut(s) | 285, 293 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 140, 259, 260 |
| BseNI | ACTGG | 1 cut(s) | 145 |
| Bsh1236I | CGCG | 1 cut(s) | 81 |
| Bsh1285I | CGRYCG | 2 cut(s) | 85, 89 |
| BshFI | GGCC | 1 cut(s) | 16 |
| BsiEI | CGRYCG | 2 cut(s) | 85, 89 |
| BsiHKAI | GWGCWC | 1 cut(s) | 23 |
| BsiHKCI | CYCGRG | 1 cut(s) | 259 |
| BsiSI | CCGG | 2 cut(s) | 227, 260 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 140, 259, 260 |
| BsmI | GAATGC | 1 cut(s) | 144 |
| BsnI | GGCC | 1 cut(s) | 16 |
| BsoBI | CYCGRG | 1 cut(s) | 259 |
| Bsp1286I | GDGCHC | 1 cut(s) | 23 |
| Bsp143I | GATC | 6 cut(s) | 55, 69, 76, 86, 130, 241 |
| BspACI | CCGC | 3 cut(s) | 53, 81, 239 |
| BspANI | GGCC | 1 cut(s) | 16 |
| BspFNI | CGCG | 1 cut(s) | 81 |
| BspLI | GGNNCC | 1 cut(s) | 132 |
| BspPI | GGATC | 6 cut(s) | 63, 77, 84, 125, 138, 249 |
| BsrI | ACTGG | 1 cut(s) | 145 |
| BssECI | CCNNGG | 2 cut(s) | 24, 259 |
| BssMI | GATC | 6 cut(s) | 55, 69, 76, 86, 130, 241 |
| BssT1I | CCWWGG | 1 cut(s) | 24 |
| BstC8I | GCNNGC | 1 cut(s) | 187 |
| BstF5I | GGATG | 2 cut(s) | 285, 293 |
| BstFNI | CGCG | 1 cut(s) | 81 |
| BstKTI | GATC | 6 cut(s) | 58, 72, 79, 89, 133, 244 |
| BstMBI | GATC | 6 cut(s) | 55, 69, 76, 86, 130, 241 |
| BstMCI | CGRYCG | 2 cut(s) | 85, 89 |
| BstSCI | CCNGG | 2 cut(s) | 258, 259 |
| BstUI | CGCG | 1 cut(s) | 81 |
| BstX2I | RGATCY | 3 cut(s) | 69, 130, 241 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 31 |
| BstYI | RGATCY | 3 cut(s) | 69, 130, 241 |
| BsuRI | GGCC | 1 cut(s) | 16 |
| BtsCI | GGATG | 2 cut(s) | 285, 293 |
| Cac8I | GCNNGC | 1 cut(s) | 187 |
| Cfr9I | CCCGGG | 1 cut(s) | 259 |
| Csp6I | GTAC | 1 cut(s) | 264 |
| CviJI | RGCY | 3 cut(s) | 16, 21, 292 |
| CviKI_1 | RGCY | 3 cut(s) | 16, 21, 292 |
| CviQI | GTAC | 1 cut(s) | 264 |
| DpnI | GATC | 6 cut(s) | 57, 71, 78, 88, 132, 243 |
| DpnII | GATC | 6 cut(s) | 55, 69, 76, 86, 130, 241 |
| EciI | GGCGGA | 2 cut(s) | 68, 254 |
| Ecl136II | GAGCTC | 1 cut(s) | 21 |
| Eco130I | CCWWGG | 1 cut(s) | 24 |
| Eco24I | GRGCYC | 1 cut(s) | 23 |
| Eco53kI | GAGCTC | 1 cut(s) | 21 |
| Eco88I | CYCGRG | 1 cut(s) | 259 |
| EcoICRI | GAGCTC | 1 cut(s) | 21 |
| EcoT14I | CCWWGG | 1 cut(s) | 24 |
| EcoT38I | GRGCYC | 1 cut(s) | 23 |
| ErhI | CCWWGG | 1 cut(s) | 24 |
| FaiI | YATR | 3 cut(s) | 11, 40, 67 |
| FokI | GGATG | 1 cut(s) | 292 |
| FriOI | GRGCYC | 1 cut(s) | 23 |
| FspBI | CTAG | 1 cut(s) | 269 |
| HaeIII | GGCC | 1 cut(s) | 16 |
| HapII | CCGG | 2 cut(s) | 227, 260 |
| HinfI | GANTC | 2 cut(s) | 125, 210 |
| HpaII | CCGG | 2 cut(s) | 227, 260 |
| HphI | GGTGA | 1 cut(s) | 113 |
| Hpy166II | GTNNAC | 2 cut(s) | 48, 206 |
| Hpy188I | TCNGA | 2 cut(s) | 130, 196 |
| Hpy8I | GTNNAC | 2 cut(s) | 48, 206 |
| Hpy99I | CGWCG | 2 cut(s) | 164, 223 |
| HpyCH4IV | ACGT | 2 cut(s) | 162, 221 |
| HpySE526I | ACGT | 2 cut(s) | 162, 221 |
| Kzo9I | GATC | 6 cut(s) | 55, 69, 76, 86, 130, 241 |
| LmnI | GCTCC | 1 cut(s) | 26 |
| LpnPI | CCDG | 5 cut(s) | 126, 175, 240, 261, 273 |
| LweI | GCATC | 1 cut(s) | 105 |
| MaeI | CTAG | 1 cut(s) | 269 |
| MaeII | ACGT | 2 cut(s) | 162, 221 |
| MalI | GATC | 6 cut(s) | 57, 71, 78, 88, 132, 243 |
| MboI | GATC | 6 cut(s) | 55, 69, 76, 86, 130, 241 |
| MboII | GAAGA | 1 cut(s) | 244 |
| MflI | RGATCY | 3 cut(s) | 69, 130, 241 |
| MhlI | GDGCHC | 1 cut(s) | 23 |
| MnlI | CCTC | 1 cut(s) | 6 |
| MspI | CCGG | 2 cut(s) | 227, 260 |
| MspR9I | CCNGG | 2 cut(s) | 260, 261 |
| Mva1269I | GAATGC | 1 cut(s) | 144 |
| MvnI | CGCG | 1 cut(s) | 81 |
| NciI | CCSGG | 2 cut(s) | 260, 261 |
| NdeII | GATC | 6 cut(s) | 55, 69, 76, 86, 130, 241 |
| NlaIV | GGNNCC | 1 cut(s) | 132 |
| NmeAIII | GCCGAG | 1 cut(s) | 42 |
| PctI | GAATGC | 1 cut(s) | 144 |
| PfeI | GAWTC | 2 cut(s) | 125, 210 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 140 |
| Ple19I | CGATCG | 1 cut(s) | 89 |
| Psp124BI | GAGCTC | 1 cut(s) | 23 |
| PspN4I | GGNNCC | 1 cut(s) | 132 |
| PsuI | RGATCY | 3 cut(s) | 69, 130, 241 |
| PvuI | CGATCG | 1 cut(s) | 89 |
| RsaI | GTAC | 1 cut(s) | 265 |
| RsaNI | GTAC | 1 cut(s) | 264 |
| SacI | GAGCTC | 1 cut(s) | 23 |
| Sau3AI | GATC | 6 cut(s) | 55, 69, 76, 86, 130, 241 |
| ScrFI | CCNGG | 2 cut(s) | 260, 261 |
| SduI | GDGCHC | 1 cut(s) | 23 |
| SetI | ASST | 3 cut(s) | 23, 165, 224 |
| SfaNI | GCATC | 1 cut(s) | 105 |
| SmaI | CCCGGG | 1 cut(s) | 261 |
| SsiI | CCGC | 3 cut(s) | 53, 81, 239 |
| SspMI | CTAG | 1 cut(s) | 269 |
| SstI | GAGCTC | 1 cut(s) | 23 |
| StyD4I | CCNGG | 2 cut(s) | 258, 259 |
| StyI | CCWWGG | 1 cut(s) | 24 |
| TaiI | ACGT | 2 cut(s) | 165, 224 |
| TaqI | TCGA | 1 cut(s) | 85 |
| TfiI | GAWTC | 2 cut(s) | 125, 210 |
| TspMI | CCCGGG | 1 cut(s) | 259 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 140 |
| XmaI | CCCGGG | 1 cut(s) | 259 |
| XspI | CTAG | 1 cut(s) | 269 |